Contig 013239:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021H09Sequence416013239 (4)ref|XP_006363261.1|3e-45PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isof384005427 (2)
JMFF025P03Sequence514013239 (4)ref|XP_006363261.1|3e-44PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isof554005427 (2)emb|CDP13389.1|1e-26unnamed protein product [Coffea canephora]
JMFN033F18Sequence503013239 (4)ref|XP_006363261.1|1e-90PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isof
JMSF006P19Sequence267013239 (4)ref|XP_006438821.1|1e-13hypothetical protein CICLE_v10032364mg [Citrus clementina] gb|ESR52061.1| hypoth

Alignment

This contig is upended


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JMFN033F18-                                 CCAAGCCTAGCTCCTTAGCCTCCGATCCCGAAAATCTC
                      ____________________________________________________________
consensus                                   CCAAGCCTAGCTCCTTAGCCTCCGATCCCGAAAATCTC
 
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JMFN033F18-           CGGCCGGTCAAAGACAACTCCATTGCATTTCCGAACCCGACGATACTCGGAAGCCTCTGG
JMFF025P03+               CGGTCAAAGACAACTCCATTGCATTTCCGAACCCGACGATACTCGGAAGCCTCTGG
                      ____________________________________________________________
consensus             CGGCCGGTCAAAGACAACTCCATTGCATTTCCGAACCCGACGATACTCGGAAGCCTCTGG
 
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JMFN033F18-           AGGGTCCCGAGGTCAGCTGCAAGGGCCAGGTCAACCTCTTTAACTGAG-AAAAAAGCATC
JMFF025P03+           AGGGTCCCGAGGTCAGCTGCAAGGGCCAGGTCAACCTCTTTAACTGAGAAAAAAAGCATC
JMFF021H09+                                                            AAAAAAGCATC
                      ____________________________________________________________
consensus             AGGGTCCCGAGGTCAGCTGCAAGGGCCAGGTCAACCTCTTTAACTGAGAAAAAAAGCATC
 
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JMFN033F18-           GGCCGCACAGTACCTAATGTCACAGGCGGTAATGATATCAATCGCACCGCCGATGCAGGC
JMFF025P03+           GGCCGCACAGTACCTAATGTCACAGGCGGTAATGATATCAATCGCACCGCCGATGCAGGC
JMFF021H09+           GGCCGCACAGTACCTAATGTCACAGGCGGTAATGATATCAATCGCACCGCCGATGCAGGC
                      ____________________________________________________________
consensus             GGCCGCACAGTACCTAATGTCACAGGCGGTAATGATATCAATCGCACCGCCGATGCAGGC
 
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JMFN033F18-           GCCGTGAACCGCGGCAA-TCACAGGCTTCCTGCACCTCTCGATCGCCGTCACGGCGTCCT
JMFF025P03+           GCCGTGAACCGCGGCAATTCACAGGCTTCCTGCACCTCTCGATCGCCGTCACGGCGTCCT
JMFF021H09+           GCCGTGAACCGCGGCAA-TCACAGGCTTCCTGCACCTCTCGATCGCCGTCACGGCGTCCT
                      ____________________________________________________________
consensus             GCCGTGAACCGCGGCAA-TCACAGGCTTCCTGCACCTCTCGATCGCCGTCACGGCGTCCT
 
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JMFN033F18-           GCATAAATTTGATGTCACGTCGGAGCTTCTCGCGCGTGCGGCCAGGTTCAGACGATTGGG
JMFF025P03+           GCATAAATTTGATGTCACGTCGGAGCTTCTCGCGCGTGCGGCCAGGTTCAGACGATTGGG
JMFF021H09+           GCATAAATTTGATGTCACGTCGGAGCTTCTCGCGCGTGCGGCCAGGTTCAGACGATTGGG
                      ____________________________________________________________
consensus             GCATAAATTTGATGTCACGTCGGAGCTTCTCGCGCGTGCGGCCAGGTTCAGACGATTGGG
 
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JMFN033F18-           ATTCAACAGCGGCCGAGCCTAGGGTATCGACCTCGATGCCAGAGCAGAAGTGTTTCCCGG
JMFF025P03+           ATTCAACAGCGGCCGAGCCTAGGGTATCGACCTCGATGCCAGAGCAGAAGTGTTTCCCGG
JMFF021H09+           ATTCAACAGCGGCCGAGCCTAGGGTATCGACCTCGATGCCAGAGCAGAAGTGTTTCCCGG
                      ____________________________________________________________
consensus             ATTCAACAGCGGCCGAGCCTAGGGTATCGACCTCGATGCCAGAGCAGAAGTGTTTCCCGG
 
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JMFN033F18-           CTCCGGCCAGGACGATGACGGCGACGTTGGGGCTTTTGTCGAGCGATGCGAGGGCCTTAG
JMFF025P03+           CTCCGGCCAGGACGATGACGGCGACGTTGGGGCTTTCGTCGAG-GATGCGAGGGCCTTAG
JMFF021H09+           CTCCGGCCAGGACGATGACGGCGACGTTGGGGCTTTCGTCGAG-GATGCGAGGGCCTTAG
JMSF006P19+                                                       GATGCGAGGGCCTTAG
                      ____________________________________________________________
consensus             CTCCGGCCAGGACGATGACGGCGACGTTGGGGCTTTCGTCGAG-GATGCGAGGGCCTTAG
 
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JMFN033F18-           GGAACTCCGTGAACAAGTCGCGTGAGAGAGCATTGAAGCGTGCGGGT             
JMFF025P03+           GGAACTCCGTGAAGAAGTCGCGTGAGAGAGCATTGAAGCGTGCGGGTCGGTTCAGGTATA
JMFF021H09+           GGAACTCCGTGAAGAAGTCGCGTGAGAGAGCATTGAAGCGTGCGGGTCGGTTCAGGTATA
JMSF006P19+           GGAACTCCGTGAAGAAGTCGCGTGAGAGAGCATTGAAGCGTGCGGGTCGGTTCAGGTATA
                      ____________________________________________________________
consensus             GGAACTCCGTGAAGAAGTCGCGTGAGAGAGCATTGAAGCGTGCGGGTCGGTTCAGGTATA
 
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JMFF025P03+           CGGTAACGACCCGAGAATTTGCAGGTTTATGAATTACTT                     
JMFF021H09+           CGGTAACGACCCGAGAATTTGCAGGTTTATGAATTACTT                     
JMSF006P19+           CGGTAACGACCCGAGAATTTGCAGGTTTATGAATTACTTGCAGCGATTTGTATTTCTCCT
                      ____________________________________________________________
consensus             CGGTAACGACCCGAGAATTTGCAGGTTTATGAATTACTTGCAGCGATTTGTATTTCTCCT
 
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JMSF006P19+           CCATTTTCAATCGATCGGAAGATTGAAAGGTCAACGGTATCGGTATACGACGGACGGATA
                      ____________________________________________________________
consensus             CCATTTTCAATCGATCGGAAGATTGAAAGGTCAACGGTATCGGTATACGACGGACGGATA
 
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JMSF006P19+           TTGTAGGTGAAAGTGAGGTCGCTTCACGAGTGTTATACTCCAAAATTTTGTGCATTTCCC
                      ____________________________________________________________
consensus             TTGTAGGTGAAAGTGAGGTCGCTTCACGAGTGTTATACTCCAAAATTTTGTGCATTTCCC