clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF020G21 | Sequence | 166 | 013236 (7) | 262 | 006879 (5) | ref|XP_008237176.1| | 1e-14 | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like | |||
JMFF036O06 | Sequence | 611 | 013236 (7) | emb|CDO97460.1| | 1e-88 | unnamed protein product [Coffea canephora] | 775 | 022373 | ref|XP_008237176.1| | 7e-105 | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like |
JMFS013D04 | Sequence | 600 | 013236 (7) | emb|CDO97460.1| | 9e-60 | unnamed protein product [Coffea canephora] | |||||
JMSF003D17 | Sequence | 284 | 003521 (4) | 696 | 013236 (7) | ref|XP_009592510.1| | 9e-11 | PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis] | |||
JMSF003E17 | Sequence | 446 | 003521 (4) | emb|CDO97460.1| | 2e-09 | unnamed protein product [Coffea canephora] | 730 | 013236 (7) | ref|XP_009592510.1| | 1e-10 | PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis] |
JMSF006I02 | Sequence | 396 | 013236 (7) | ref|XP_003524744.1| | 1e-14 | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like | 453 | 006879 (5) | ref|XP_010676904.1| | 1e-39 | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like |
JMSF043H23 | Sequence | 501 | 003521 (4) | emb|CDO97460.1| | 7e-10 | unnamed protein product [Coffea canephora] | 729 | 013236 (7) | ref|XP_009592510.1| | 1e-10 | PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF043H23- G
rJMSF003E17- TATTGAATTACAAGGGATGTAATGTGATACAAATGATTAATATTAAATAAGG
rJMSF003D17- G
____________________________________________________________
consensus TATTGAATTACAAGGGATGTAATGTGATACAAATGATTAATATTAAATAAGG
. : . : . : . : . : . :
rJMSF043H23- TCAAACTAGACACGAGAATATATACAATTCTATGCACATAAAGATTGGTAACAATTATCA
rJMSF003E17- TCAAACTAGACACGAGAATATATACAATTCTATGCACATAAAGATTGGTAACAATTATCA
rJMSF003D17- TCAAACTAGACACGAGAATATATACAATTCTATGCACATAAAGATTGGTAACAATTATCA
____________________________________________________________
consensus TCAAACTAGACACGAGAATATATACAATTCTATGCACATAAAGATTGGTAACAATTATCA
. : . : . : . : . : . :
rJMSF043H23- TCTTCATCAAAACTATTGAGGTCAACACTTTGGAAGTCCTTTGTCTTGGGGAGAAGGTCC
rJMSF003E17- TCTTCATCAAAACTATTGAGGTCAACACTTTGGAAGTCCTTTGTCTTGGGGAGAAGGTCC
rJMSF003D17- TCTTCATCAAAACTATTGAGGTCAACACTTTGGAAGTCCTTTGTCTTGGGGAGAAGGTCC
____________________________________________________________
consensus TCTTCATCAAAACTATTGAGGTCAACACTTTGGAAGTCCTTTGTCTTGGGGAGAAGGTCC
. : . : . : . : . : . :
rJMSF043H23- GATTTGATGAGTACATCTAGATATGCAATAATTCCCTTCAAATGTTGGTATGCCCCTCGA
rJMSF003E17- GATTTGATGAGTACATCTAGATATGCAATAATTCCCTTCAAATGTTGGTATGCCCCTCGA
rJMSF003D17- GATTTGATGAGTACATCTAGATATGCAATAATTCCCTTCAAATGTTGGTATGCCCCTCGA
____________________________________________________________
consensus GATTTGATGAGTACATCTAGATATGCAATAATTCCCTTCAAATGTTGGTATGCCCCTCGA
. : . : . : . : . : . :
rJMSF043H23- GTTCCTGTCTCATTGAAATTGGATAGTCATGCCATTTCATCCACTGAAGCCTCTTGAACC
rJMSF003E17- GTTCCTGTCTCATTGAAATTGGATAGTCATGCCATTTCATCCACTGAAGCCTCTTGAACC
rJMSF003D17- GTTCCTGTCTCATTGAAATTGGATAGTCATGCCATTTCATCCACTGAAGCCTCTTGAACC
____________________________________________________________
consensus GTTCCTGTCTCATTGAAATTGGATAGTCATGCCATTTCATCCACTGAAGCCTCTTGAACC
. : . : . : . : . : . :
rJMSF043H23- AGAAATCCTTTAAAAGCTGTTTGAATGCATATGACTGCCCATTCTTCTCTCATACTCTTT
rJMSF003E17- AGAAATCCTTTAAAAGCTGTTTGAATGCATATGACTGCCCATTCTTCTCTCATACTCTTT
rJMSF003D17- AGAAATCCTTTAAAAGCTGTTTGAATGCATATGACTGCCCATTCTTCTCTCATACTCTTT
____________________________________________________________
consensus AGAAATCCTTTAAAAGCTGTTTGAATGCATATGACTGCCCATTCTTCTCTCATACTCTTT
. : . : . : . : . : . :
rJMSF043H23- TGAATTTGAGCTGCATCCTCCAATTGGTGTGAGCATGAAGGTGAACCAACAGCAACCGGA
rJMSF003E17- TGAATTTGAGCTGCATCCTCCAATTGGTGTGAGCATGAAGGTGAACCAACAGCAACCGGA
rJMSF003D17- TGAATTTGAGCTGCATCCTCCAATTGGTGTGAGCATGAAGGTGAACCANCAGCAACCGGA
____________________________________________________________
consensus TGAATTTGAGCTGCATCCTCCAATTGGTGTGAGCATGAAGGTGAACCAACAGCAACCGGA
. : . : . : . : . : . :
rJMSF043H23- GCTGAAGATACTTTGAAATCTTCAACTGATGTAGAAGCATTATCATTACGACTGAACTCA
rJMSF003E17- GCTGAAGATACTTTGAAATCTTCAACTGATGTAGAAGCATTATCATTACGACTGAACTCA
rJMSF003D17- GCTGAAGATACTTTGAAATCTTCAACTGATGTAGAAGCATTATCATTACGACTGAACTCA
____________________________________________________________
consensus GCTGAAGATACTTTGAAATCTTCAACTGATGTAGAAGCATTATCATTACGACTGAACTCA
. : . : . : . : . : . :
rJMSF043H23- ACTCTGAATTAGATCACTATCAATCTCA
rJMSF003E17- ACTCTGAATTAGATCACTATCAATCTCA
rJMSF003D17- ACTCTGAATTAGATCACTATCAATCTCAGTTGCAAGTGATTTCTCAGGTCCTTCCAAACC
____________________________________________________________
consensus ACTCTGAATTAGATCACTATCAATCTCAGTTGCAAGTGATTTCTCAGGTCCTTCCAAACC
. : . : . : . : . : . :
rJMSF003D17- AATCAGTGACATAATCCACTTCCCTGAAACTCCATTGGCAAAGTTGCTTCAGCTCTACCA
____________________________________________________________
consensus AATCAGTGACATAATCCACTTCCCTGAAACTCCATTGGCAAAGTTGCTTCAGCTCTACCA
. : . : . : . : . : . :
rJMSF003D17- ACCTCAAACCTTAGGTACACAAATTCCTTCTTGTCTGACTTCAATAACATTACCATGAGA
JMFF036O06+ AACCTTAGGTGCACCAATTCCTTCTTGTCTGACTTCAATAACATTACCATGAGA
JMFS013D04+ ATTACCATGAGA
____________________________________________________________
consensus ACCTCAAACCTTAGGTGCACCAATTCCTTCTTGTCTGACTTCAATAACATTACCATGAGA
. : . : . : . : . : . :
rJMSF003D17- ATCAATTCTTTTCATGAATATATCATGTC
JMFF036O06+ ATTAATTCTTTTCATGAATATATCATGTCTTATGTCAAGATGTTGCTCTCCACTAATATC
JMFS013D04+ ATTAATTCTTTTCATGAATATATCATGTCTTATGTCAAGATGTTGCTCTCCACTAATATC
____________________________________________________________
consensus ATTAATTCTTTTCATGAATATATCATGTCTTATGTCAAGATGTTGCTCTCCACTAATATC
. : . : . : . : . : . :
JMFF036O06+ CATGGCATCTACACTAAGTAACGAACACCTGATGGCCGGAAAGGTGACATCAAAATTGAT
JMFS013D04+ CATGGCATCTACACTAAGTAACGAACACCTGATGGCCGGAAAGGTGACATCAAAATTGAT
____________________________________________________________
consensus CATGGCATCTACACTAAGTAACGAACACCTGATGGCCGGAAAGGTGACATCAAAATTGAT
. : . : . : . : . : . :
JMFF036O06+ ATGCAATTTTTCTCCTCTTGAAGTGTCTACAATAAGCCTAGTCTCAGTAACAGTATGGAG
JMFS013D04+ ATGCAATTTTTCTCCTCTTGAAGTGTCTACAATAAGCCTAGTCTCAGTAACAGTATGGAG
____________________________________________________________
consensus ATGCAATTTTTCTCCTCTTGAAGTGTCTACAATAAGCCTAGTCTCAGTAACAGTATGGAG
. : . : . : . : . : . :
JMFF036O06+ ATACAGTCTGAACTCGGAGAAGAAAAGCAGGAGCATGGCGATGGAGGAGACGAGGGTGAT
JMFS013D04+ ATACAGTCTGAACTCGGAGAAGAAAAGCAGGAGCATGGCGATGGAGGAGACGAGGGTGAT
JMSF006I02+ AAGCAGGAGCATGGCGATGGAGGAGACGAGGGTGAT
____________________________________________________________
consensus ATACAGTCTGAACTCGGAGAAGAAAAGCAGGAGCATGGCGATGGAGGAGACGAGGGTGAT
. : . : . : . : . : . :
JMFF036O06+ AACACCGCCGGAGAGGGTACGGTTGTAGAAATCCTCATTGATTTTCGGGTAAGCATCCAA
JMFS013D04+ AACACCGCCGGAGAGGGTACGGTTGTAGAAATCCTCATTGATTTTCGGGTAAGCATCCAA
JMSF006I02+ AACACCGCCGGAGAGGGTACGGTTGTAGAAATCCTCATTGATTTTCGGGTAAGCATCCAA
____________________________________________________________
consensus AACACCGCCGGAGAGGGTACGGTTGTAGAAATCCTCATTGATTTTCGGGTAAGCATCCAA
. : . : . : . : . : . :
JMFF036O06+ GTTCCTGAGCTTATTGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
JMFF020G21+ TGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
JMFS013D04+ GTTCCTGAGCTTATTGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
JMSF006I02+ GTTCCTGAGCTTATTGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
____________________________________________________________
consensus GTTCCTGAGCTTATTGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
. : . : . : . : . : . :
JMFF036O06+ TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
JMFF020G21+ TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
JMFS013D04+ TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
JMSF006I02+ TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
____________________________________________________________
consensus TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
. : . : . : . : . : . :
JMFF036O06+ CGCCGGCTTCTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
JMFF020G21+ CGCCGGCTTNTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
JMFS013D04+ CGCCGGCTTCTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
JMSF006I02+ CGCCGGCTTCTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
____________________________________________________________
consensus CGCCGGCTTCTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
. : . : . : . : . : . :
JMFS013D04+ ACGGAATTTGGTGCGGTGTCGGGTTGGGAATATATGTATGGGATGAAATCGGGTCGGGTT
JMSF006I02+ ACGGAATTTGGTGCGGTGTCGGGTTGGGAATATATGTATGGGATGAAATCGGGTCGGGTT
____________________________________________________________
consensus ACGGAATTTGGTGCGGTGTCGGGTTGGGAATATATGTATGGGATGAAATCGGGTCGGGTT
. : . : . : . : . : . :
JMFS013D04+ CGTCAACGTGACCGAGGCAGAATCGGCGTCGAGCCAGTAGCCACCGGT
JMSF006I02+ CGTCAACGTGACCGAGGCAGAATCGGCGTCGAGCCAGTAGCCACCGGTGCGTCAGCGGTC
____________________________________________________________
consensus CGTCAACGTGACCGAGGCAGAATCGGCGTCGAGCCAGTAGCCACCGGTGCGTCAGCGGTC