| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS020E05 | Sequence | 611 | 013234 (7) | ref|XP_010692517.1| | 61.2 | PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp. vulgaris] | |||||
| JMFS095F05 | Sequence | 627 | 013234 (7) | ref|XP_010692517.1| | 129 | PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp. vulgaris] | |||||
| JMFS105C10 | Sequence | 622 | 013234 (7) | gb|KJB48829.1| | 1e-24 | hypothetical protein B456_008G089200 [Gossypium raimondii] | |||||
| JMFS134B02 | Sequence | 624 | 013234 (7) | gb|KJB48829.1| | 1e-26 | hypothetical protein B456_008G089200 [Gossypium raimondii] | |||||
| JMSF006E16 | Sequence | 294 | 013234 (7) | 210 | 008429 (4) | ||||||
| JMSF009C19 | Sequence | 334 | 013234 (7) | 775 | 008429 (4) | ref|NP_001065797.2| | 1e-64 | Os11g0157000 [Oryza sativa Japonica Group] dbj|BAF27642.2| Os11g0157000 [Oryza s | |||
| JMSF020D07 | Sequence | 632 | 013234 (7) | gb|KJB48829.1| | 6e-24 | hypothetical protein B456_008G089200 [Gossypium raimondii] | 712 | 008429 (4) | ref|NP_001065797.2| | 1e-26 | Os11g0157000 [Oryza sativa Japonica Group] dbj|BAF27642.2| Os11g0157000 [Oryza s |
This contig is upended
. : . : . : . : . : . :
JMFS095F05+ AATTCATCCAAGTGAGA
____________________________________________________________
consensus AATTCATCCAAGTGAGA
. : . : . : . : . : . :
JMFS095F05+ TTTAATAGAAGTACCTTCCGTCATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
JMFS134B02+ TAGAAGTACCTTCCGTCATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
JMFS020E05+ GTCATACGGATTGTGTACAGACGCTCCTTCAAACGCAGCAT
JMFS105C10+ TTCCGTCATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
JMSF020D07+ CATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
____________________________________________________________
consensus TTTAATAGAAGTACCTTCCGTCATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
. : . : . : . : . : . :
JMFS095F05+ GTTTGCCAGAGTTTTGGCCATGTAAAGCGTATCCAACTTGGACCATAAATCTGACGCAGT
JMFS134B02+ GTTCGCCAGAGTTTTGGCCATGTAAAGCGTATCCAGCTTGGACCATAAATCTGACGCAGT
JMFS020E05+ GTTCGCCAGAGTTTTGGCCATGTAAAGCGTATCCAGCTTGGACCATAAATCTAACGCAGT
JMFS105C10+ GTTCGCCAGAGTTTTGGCCATGTAAAGCGTATCCAGCTTGGACCATAAATCTGACGCAGT
JMSF020D07+ GTTCGCCAGAGTTTTGGCCANGTAAAGCGTATCCAGCTTGGACCATAAATCTGACGCAGT
____________________________________________________________
consensus GTTCGCCAGAGTTTTGGCCATGTAAAGCGTATCCAGCTTGGACCATAAATCTGACGCAGT
. : . : . : . : . : . :
JMFS095F05+ CGTCTCACTTAACACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
JMFS134B02+ CGTCTCACTTAATACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
JMFS020E05+ CGTCTCACTTACCACCTCACGTAGAACCTCTTTAGACATGCACAAAAAGGATGGTTGAAC
JMFS105C10+ CGTCTCACTTAATACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
JMSF020D07+ CGTCTCACTTAATACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
____________________________________________________________
consensus CGTCTCACTTAATACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
. : . : . : . : . : . :
JMFS095F05+ GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
JMFS134B02+ GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
JMFS020E05+ GTGCCTTGTCATCCAAATCTTCCCAATCTTCATTTGTCATTGCAGCTGGTTTCTTCTTCT
JMFS105C10+ GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
JMSF020D07+ GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
____________________________________________________________
consensus GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
. : . : . : . : . : . :
JMFS095F05+ TCCCAGCTAGCGCTTTCTTCAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
JMFS134B02+ TCCCAGCTAGCGCTTTCTTCAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
JMFS020E05+ TCCTAGCTAGAGCTTTCTTCAAACTGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCT
JMFS105C10+ TCCCAGCTAGCGCTTTCTTTAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
JMSF020D07+ TCCCAGCTAGCGCTTTCTTTAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
____________________________________________________________
consensus TCCCAGCTAGCGCTTTCTTCAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
. : . : . : . : . : . :
JMFS095F05+ AGATAGAAAAGCTAATTTTCCCGTCGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
JMFS134B02+ AGATAGAAAAGCTAATTTTCCCGTCGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
JMFS020E05+ AGATAGAAAAGCTAATTTTCC---AGAACTTCTCGATGTCGAACTTGGTAACAGTTGACA
JMFS105C10+ AGATAGAAAAGCTAATTTTCCCGTTGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
JMSF009C19+ GAACTTCTCGATATCGAACTTGGTAACAGTTGACA
JMSF020D07+ AGATAGAAAAGCTAATTTTCCCGTTGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
____________________________________________________________
consensus AGATAGAAAAGCTAATTTTCCCGTTGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
. : . : . : . : . : . :
JMFS095F05+ TCTTTGAAAATAACTCTCAATTAAACTTGGCTCTGATACCACTTGTTAGGAATATAGCGG
JMFS134B02+ TCTTTGAAAATAACTCTCAATTAAACCTGGCTCTGATACCACTTGTTAGGAATATAGCGG
JMFS020E05+ TCTTTGAAAATAATTCTCAAGTAAACC--GTTTTGATACCACTTGTTAGGAATATAGCGG
JMFS105C10+ TCTTTGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
JMSF009C19+ TCTNTGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
JMSF020D07+ TCTTTGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
JMSF006E16+ TGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
____________________________________________________________
consensus TCTTTGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
. : . : . : . : . : . :
JMFS095F05+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAA
JMFS134B02+ AATAATGCGGAAGCAAAGAATCGAAAATTGAGAATTATAGAAGTATAATAATAGGAAAAA
JMFS020E05+ AATAATGCGGAAGCGACGAATCAAAAATTAAGAATTATAGAAGTTAAATAATAGGGAGAA
JMFS105C10+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
JMSF009C19+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
JMSF020D07+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
JMSF006E16+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
____________________________________________________________
consensus AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
. : . : . : . : . : . :
JMFS134B02+ TATATAAACGAAGAAAATTATATAAATGACAAAA
JMFS020E05+ TATA
JMFS105C10+ TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
JMSF009C19+ TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
JMSF020D07+ TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
JMSF006E16+ TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
____________________________________________________________
consensus TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
. : . : . : . : . : . :
JMFS105C10+ TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
JMSF009C19+ TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
JMSF020D07+ TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
JMSF006E16+ TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
____________________________________________________________
consensus TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
. : . : . : . : . : . :
JMFS105C10+ TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATT
JMSF009C19+ TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATTGATGTGAGAATGAGC
JMSF020D07+ TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATTGATGTGAGAATGAGC
JMSF006E16+ TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATTGATGTGAGAATGAGCGACCC
____________________________________________________________
consensus TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATTGATGTGAGAATGAGCGACCC