Contig 013228:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS119G08Sequence642013228 (6)ref|XP_004245663.1|8e-42PREDICTED: protein FAM63B [Solanum lycopersicum]
JMFS130A07Sequence599013228 (6)ref|XP_004245663.1|5e-33PREDICTED: protein FAM63B [Solanum lycopersicum]
JMFS145E07Sequence617013228 (6)ref|XP_004245663.1|5e-51PREDICTED: protein FAM63B [Solanum lycopersicum]
JMSF005K02Sequence306013228 (6)
JMSF006A17Sequence237013228 (6)404011246 (2)ref|XP_009760349.1|2e-15PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana sylvestris]
JMSF020A21Sequence201013228 (6)777009754 (3)ref|XP_006358850.1|2e-80PREDICTED: protein FAM63B-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS145E07+           TATTTACATCAATTCCAGTTGTAAGTCTAGGAAGCAAATCAATGGCATCAGCAATATTCT
JMFS119G08+                                                  CAATGGCATCAGCAATATTCT
                      ____________________________________________________________
consensus             TATTTACATCAATTCCAGTTGTAAGTCTAGGAAGCAAATCAATGGCATCAGCAATATTCT
 
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JMFS145E07+           GCTGCTGATTCTCAACATAACCGGCATCTTTGTCATTGACATTACTGTTTGAATCAATAA
JMFS130A07+                              ACCGGCATCTTTGTCATTGACATTACTGTTTGAATCAATAA
JMFS119G08+           GCTGCTGATTCTCAACATAACCGGCATCTTGGTCATTGACATTACTGTTTGAATCAATAA
                      ____________________________________________________________
consensus             GCTGCTGATTCTCAACATAACCGGCATCTTTGTCATTGACATTACTGTTTGAATCAATAA
 
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JMFS145E07+           GCCGCTCTGCAACAAGAGATAGCAGTTTTTCCTGTGAAACCTCGGGGACATCAGGACTCA
JMFS130A07+           GCCGCTCTGCAACAAGAGATAGCAGTTTTTCCTGTGAAACCTCGGGGACATCAGGACTCA
JMFS119G08+           GCCGCTCTGCAACAAGAGATAGCAGTTTTTCCTGTGAAACCTCGGGGACATCAGGACTCA
                      ____________________________________________________________
consensus             GCCGCTCTGCAACAAGAGATAGCAGTTTTTCCTGTGAAACCTCGGGGACATCAGGACTCA
 
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JMFS145E07+           AATTCAAGTTGTTCTTCAACAGGAGCACATTGCAGATTGCAAGAAGAGGGCAAGGGCCAT
JMFS130A07+           AATTCAAGTTGTTCTTCAACAGGAGCACATTGCAGATTGCAAGAAGAGGGCAAGGGCCAT
JMFS119G08+           AATTCAAGTTGTTCTTCAACAGGAGCACATTGCAGATTGCAAGAAGAGGGCAAGGGCCAT
                      ____________________________________________________________
consensus             AATTCAAGTTGTTCTTCAACAGGAGCACATTGCAGATTGCAAGAAGAGGGCAAGGGCCAT
 
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JMFS145E07+           TGTCATTCTGGAGAATGATGGGAGTCGTTCTGCCCAGAAACTGAATAACCTTGGTCTTGT
JMFS130A07+           TGTCATTCTGGAGAATGATGGGAGTCGTTCTGCCCAGAAACTGAATAACCTTGGTCTTGT
JMFS119G08+           TGTCATTCTGGAGAATGATGGGAGTCGTTCTGCCCAGAAACTGAATAACCTTGGTCTTGT
                      ____________________________________________________________
consensus             TGTCATTCTGGAGAATGATGGGAGTCGTTCTGCCCAGAAACTGAATAACCTTGGTCTTGT
 
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JMFS145E07+           GGACCATTTCCTTCTCTTTGGTCGCAGCCGGCGCAGGCTCGTCTCGATTCTGGCTTTCCT
JMFS130A07+           GGACCATTTCCTTCTCTTTGGTCGCAGCCGGCGCAGGCTCGTCTCGATTCTGGCTTTCCT
JMFS119G08+           GGACCATTTCCTTCTCTTTGGTCGCAGCCGGCGCAGGCTCGTCTCGATTCTGGCTTTCCT
                      ____________________________________________________________
consensus             GGACCATTTCCTTCTCTTTGGTCGCAGCCGGCGCAGGCTCGTCTCGATTCTGGCTTTCCT
 
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JMFS145E07+           CCTGCATCGCATCGGCTGCCGGCGTCGTCGCCGTCGTGGAAGAAGAGGGAGCCGCAGAAA
JMFS130A07+           CCTGCATCGCATCGGCTGCCGGCGTCGTCGCCGTCGTGGAAGAAGAGGGAGCCGCAGAAA
JMFS119G08+           CCTGCATCGCATCGGCTGCCGGCGTCGTCGCCGTCGTGGAAGAAGAGGGAGCCGCAGAAA
                      ____________________________________________________________
consensus             CCTGCATCGCATCGGCTGCCGGCGTCGTCGCCGTCGTGGAAGAAGAGGGAGCCGCAGAAA
 
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JMFS145E07+           AAGACATTTCAGGGAGAAAAAAAAAAAAAATTGAATCGGCAAATTGGGCACACGGGATTT
JMSF020A21+                          GAAAAAAAAAAAAAATTGAATCGGCAAATTGGGCACACGGGATTT
JMFS130A07+           AAGACATTTCAGGGAGAAAAAAAAAAAAAATTGAATCGGCAAATTGGGCACACGGGATTT
JMFS119G08+           AAGACATTTCAGGGAG-AAAAAAAAAAAAATTGAATCGGCAAATTGGGCACACGGGATTT
JMSF005K02+                            AAAAAAAAAAAAATTGAATCGGCAAATTGGGCACACGGGATTT
                      ____________________________________________________________
consensus             AAGACATTTCAGGGAGAAAAAAAAAAAAAATTGAATCGGCAAATTGGGCACACGGGATTT
 
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JMFS145E07+           ACGTAATCTATTCCTTATCTACGACCATATAGACTGAGTATACGTAAGAGAATACAGGAT
JMSF020A21+           ACGTAATCTATTCCTTATCTACGACCATATAGACTGAGTATACGTAAGAGAATACAGGAT
JMFS130A07+           ACGTAATCTATTCCTTATCTACGACCATATAGACTGAGTATACGTAAGAGAATACAGGAT
JMFS119G08+           ACGTAATCTATTCCTTATCTACGACCATATAGACTGAGTATACGTAAGAGAATACAGGAT
JMSF006A17+            CGTAATCTATTCCTTATCTACGACCATATAGACTGAGTATACGTAAGAGAATACAGGAT
JMSF005K02+           ACGTAATCTATTCCTTATCTACGACCATATAGACTGAGTATACGTAAGAGAATACAGGAT
                      ____________________________________________________________
consensus             ACGTAATCTATTCCTTATCTACGACCATATAGACTGAGTATACGTAAGAGAATACAGGAT
 
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JMFS145E07+           CTAAACTTAACGCGAGAAAGAGAGAAAATCAGGGATTCATGACGACATATATATATATGC
JMSF020A21+           CTAAACTTAACGCGAGAAAGAGAGAAAATCAGGGATTCATGACGACATATATATATATGC
JMFS130A07+           CTAAACTTAACGCGAGAAAGAGAGAAAATCAGGGATTCATGACGACATATATATATATGC
JMFS119G08+           CTAAACTTAACGCGAGAAAGAGAGAAAATCAGGGATTCATGACGACATATATATATATGC
JMSF006A17+           CTAAACTTAACGCGAGAAAGAGAGAAAATCAGGGATTCATGACGACATATATATATATGC
JMSF005K02+           CTAAACTTAACGCGAGAAAGAGAGAAAATCAGGGATTCATGACGACATATATATATATGC
                      ____________________________________________________________
consensus             CTAAACTTAACGCGAGAAAGAGAGAAAATCAGGGATTCATGACGACATATATATATATGC
 
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JMFS145E07+           TGCAAAATTAGCGTGGA                                           
JMSF020A21+           TGCAAAATTAGCGTGGAGAAAGTGGTAGC                               
JMFS130A07+           TGCAAAATTAGCGTGGAGAAAGTGGTAGCCAAGTGAAAAGGGCACCATTTTCCCTTTTGC
JMFS119G08+           TGCAAAATTAGCGTGGAGAAAGTGGTAGCCAAGTGAAAAGGGCACCATTTTCCCTTTTGC
JMSF006A17+           TGCAAAATTAGCGTGGAGAAAGTGGTAGCCAAGTGAAAAGGGCACCATTTTCCCTTTTGC
JMSF005K02+           TGCAAAATTAGCGTGGAGAAAGTGGTAGCCAAGTGAAAAGGGCACCATTTTCCCTTTTGC
                      ____________________________________________________________
consensus             TGCAAAATTAGCGTGGAGAAAGTGGTAGCCAAGTGAAAAGGGCACCATTTTCCCTTTTGC
 
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JMFS130A07+           TTTTTCTTCCTCTTTTTG                                          
JMFS119G08+           TTTTTCTTCCTCTTTTTG                                          
JMSF006A17+           TTTTTCTTCCTCTTTTTGCCAATTATTATCACGTCCGTATCTTCCTATTTTGAACTCC  
JMSF005K02+           TTTTTCTTCCTCTTTTTGCCAATTATTATCACGTCCGTATCTTCCTATTTTGAACTCCAA
                      ____________________________________________________________
consensus             TTTTTCTTCCTCTTTTTGCCAATTATTATCACGTCCGTATCTTCCTATTTTGAACTCCAA