| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002H22 | Sequence | 321 | 013226 (5) | ref|XP_011082747.1| | 9e-32 | PREDICTED: tRNA dimethylallyltransferase 9 [Sesamum indicum] | 755 | 005595 (5) | ref|XP_004294141.2| | 8e-66 | PREDICTED: tRNA dimethylallyltransferase 9 [Fragaria vesca subsp. vesca] |
| JMSF005D13 | Sequence | 335 | 013226 (5) | ref|XP_011082747.1| | 2e-34 | PREDICTED: tRNA dimethylallyltransferase 9 [Sesamum indicum] | 334 | 005595 (5) | |||
| JMSF008L03 | Sequence | 364 | 013226 (5) | ref|XP_011082747.1| | 4e-46 | PREDICTED: tRNA dimethylallyltransferase 9 [Sesamum indicum] | 755 | 005595 (5) | ref|XP_004294141.2| | 5e-75 | PREDICTED: tRNA dimethylallyltransferase 9 [Fragaria vesca subsp. vesca] |
| JMSF038G09 | Sequence | 656 | 013226 (5) | ref|XP_011082747.1| | 7e-45 | PREDICTED: tRNA dimethylallyltransferase 9 [Sesamum indicum] | 881 | 005595 (5) | ref|XP_009587099.1| | 7e-94 | PREDICTED: tRNA dimethylallyltransferase 9 [Nicotiana tomentosiformis] |
| JMSF042D18 | Sequence | 159 | 013226 (5) | 709 | 005595 (5) | ref|XP_004294141.2| | 5e-68 | PREDICTED: tRNA dimethylallyltransferase 9 [Fragaria vesca subsp. vesca] | |||
This contig is upended
. : . : . : . : . : . :
JMSF038G09+ ACTGAATAATCTAGTG
____________________________________________________________
consensus ACTGAATAATCTAGTG
. : . : . : . : . : . :
JMSF038G09+ CACAAAGGTGGGCAAAACACAAAGAACCGTCTCCTCATTAGGAGACAACAATATAGGCAT
____________________________________________________________
consensus CACAAAGGTGGGCAAAACACAAAGAACCGTCTCCTCATTAGGAGACAACAATATAGGCAT
. : . : . : . : . : . :
JMSF038G09+ ATAGCCCCATAGGAATACTGATCACCGTAAGTTGGAAAATATATTCTGAAGCACACAATT
____________________________________________________________
consensus ATAGCCCCATAGGAATACTGATCACCGTAAGTTGGAAAATATATTCTGAAGCACACAATT
. : . : . : . : . : . :
JMSF038G09+ ATTCTAATCCAAATGTCATTTTTTTTAAATTATATATACCTAGCAAAGAACATTTGAAAA
____________________________________________________________
consensus ATTCTAATCCAAATGTCATTTTTTTTAAATTATATATACCTAGCAAAGAACATTTGAAAA
. : . : . : . : . : . :
JMSF038G09+ TCTGCCAAGCATATTAAAAGGAACACCATTAACAAAATTCTAATATTTTAATAAATGCAT
____________________________________________________________
consensus TCTGCCAAGCATATTAAAAGGAACACCATTAACAAAATTCTAATATTTTAATAAATGCAT
. : . : . : . : . : . :
JMSF038G09+ TTACTATTGAGGATTCTTTGATAAGATCTAGATAGCAATACCTTCAGATGGATGCAGAAT
JMSF008L03+ CTTCAGATGGATGCAGAAT
____________________________________________________________
consensus TTACTATTGAGGATTCTTTGATAAGATCTAGATAGCAATACCTTCAGATGGATGCAGAAT
. : . : . : . : . : . :
JMSF038G09+ GTCAATCAGATGGTGTGGCACCTCCTTTCTTTCACTGAGTGAAGGCTTTGCAGAACCAAT
JMSF008L03+ GTCAATCAGATGGTGTGGCACCTCCTTTCTTTCACTGAGTGAAGGCTTTGCAGAACCAAT
JMSF002H22+ GAGTGAAGGCNTTGCAGAACCAAT
JMSF005D13+ TTTCTTTCACTGAGTGAAGGCTTTGCAGAACCAAT
____________________________________________________________
consensus GTCAATCAGATGGTGTGGCACCTCCTTTCTTTCACTGAGTGAAGGCTTTGCAGAACCAAT
. : . : . : . : . : . :
JMSF038G09+ ATCAAGCCCTCTGTACACCTGCACTGAGTCCGCGCTGATGATTTCTCCATTGAGTCGCTT
JMSF008L03+ ATCAAGCCCTCTGTACACCTGCACTGAGTCCGCGCTGATGATTTCTCCATTGAGTCGCTT
JMSF002H22+ ATCAAGCCCTCTGTACACCTGCACTGAGTCCGCGCTGATGATTTCTCCATTGAGTCGCTT
JMSF005D13+ ATCAAGCCCTCTGTACACCTGCACTGAGTCCGCGCTGATGATTTCTCCATTGAGTCGCTT
____________________________________________________________
consensus ATCAAGCCCTCTGTACACCTGCACTGAGTCCGCGCTGATGATTTCTCCATTGAGTCGCTT
. : . : . : . : . : . :
JMSF038G09+ CGCGAGCTCAAGCGCAAGCTTGCTTTTGCCGGCACCGGTGGGTCCTGATATCACAATTAC
JMSF008L03+ CGCGAGCTCAAGCGCAAGCTTGCTTTTGCCGGCACCGGTGGGTCCTGATATCACAATTAC
JMSF002H22+ CGCGAGCTCAAGCGCAAGCTTGCTTTTGCCGGCACCGGTGGGTCCTGATATCACAATTAC
JMSF005D13+ CGCGAGCTCAAGCGCAAGCTTGCTTTTGCCGGCACCGGTGGGTCCTGATATCACAATTAC
____________________________________________________________
consensus CGCGAGCTCAAGCGCAAGCTTGCTTTTGCCGGCACCGGTGGGTCCTGATATCACAATTAC
. : . : . : . : . : . :
JMSF038G09+ CTTCTCCTTCTTTCCCGCCACCGGTTTGGTGGAGGCGGAGCAGGAGGTAGCGAATAATCT
JMSF008L03+ CTTCTCCTTCTTTCCCGCCACCGGTTTGGTGGAGGCGGAGCAGGAGGTAGCGAATAATCT
JMSF042D18+ CCTTCTTTCCCGCCACCGGTTTGGTGGAGGCGGAGCAGGAGGTAGCGAATAATCT
JMSF002H22+ CTTCTCCTTCTTTCCCGCCACCGGTTTGGTGGAGGCGGAGCAGGAGGTAGCGAATAATCT
JMSF005D13+ CTTCTCCTTCTTTCCCGCCACCGGTTTGGTGGAGGCGGAGCAGGAGGTAGCGAATAATCT
____________________________________________________________
consensus CTTCTCCTTCTTTCCCGCCACCGGTTTGGTGGAGGCGGAGCAGGAGGTAGCGAATAATCT
. : . : . : . : . : . :
JMSF038G09+ CCGGCCGCCTCGGTGGAAGGTGAGGCCATAAGGGCCCCGCAAAAGAGGCGTCTCGGCCGT
JMSF008L03+ CCGGCCGCCTCGGTGGAAGGTGAGGCCATAAGGGCCCCGCAAAAGAGGCGTCTCGGCCGT
JMSF042D18+ CCGGCCGCCTCGGNGGAAGGTGAGGCCATAAGGGCCCCGCAAAAGAGGCGTCTCGNCCGT
JMSF002H22+ CCGGCCGCCTCGGTGGAAGGTGAGGCCATAAGGGCCCCGCAAAAGAGGCGTCTCGGCCGT
JMSF005D13+ CCGGCCGCCTCGGTGGAAGGTGAGGCCATAAGGGCCCCGCAAAAGAGGCGTCTCGGCCGT
____________________________________________________________
consensus CCGGCCGCCTCGGTGGAAGGTGAGGCCATAAGGGCCCCGCAAAAGAGGCGTCTCGGCCGT
. : . : . : . : . : . :
JMSF038G09+ GCACCGGAAGCGAAGGCAGCTCATTCGGACACCGCCGC
JMSF008L03+ GCACCGGAAGCGAAGGCAGCTCATTCGGACACCGCCGCTAAGC
JMSF042D18+ GCACCGGAAGCGAAGGCAGCTCATTCGGACACCGCCGCTAAGC
JMSF002H22+ GCACCGGAAGCGAAGGCAGCTCATTCGGACACCGCCGCTAAGCATTTGGTTCGGAT
JMSF005D13+ GCACCGGAAGCGAAGGCAGCTCATTCGGACACCGCCGCTAAGCATTTGGTTCGGATATCC
____________________________________________________________
consensus GCACCGGAAGCGAAGGCAGCTCATTCGGACACCGCCGCTAAGCATTTGGTTCGGATATCC