Contig 013223:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004K24Sequence267013223 (3)ref|XP_009768551.1|2e-05PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana370002759 (2)
JMSF038A18Sequence657013223 (3)ref|XP_009768551.1|2e-95PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana
JMSF045F05Sequence812013223 (3)ref|XP_009768551.1|3e-122PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana755002759 (2)ref|XP_010271641.1|8e-102PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu

Alignment

This contig is upended


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JMSF045F05+                             CTGTATAAACAGGTACATCAACCTGTTCACCCAAAATAACAA
                      ____________________________________________________________
consensus                               CTGTATAAACAGGTACATCAACCTGTTCACCCAAAATAACAA
 
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JMSF045F05+           GTTGGTCTATTGCAGCAGGTCTATACACATCTCCAGCAATTAGCATGCATTTTTTCCCCA
                      ____________________________________________________________
consensus             GTTGGTCTATTGCAGCAGGTCTATACACATCTCCAGCAATTAGCATGCATTTTTTCCCCA
 
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JMSF038A18+                                                            ACCTTGTAGAC
JMSF045F05+           GCTTTTTAAGATATAAAGCTAATTTTGCACTGATAGTGGTCTTTCCAACACCTTGTAGAC
                      ____________________________________________________________
consensus             GCTTTTTAAGATATAAAGCTAATTTTGCACTGATAGTGGTCTTTCCAACACCTTGTAGAC
 
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JMSF038A18+           CGGCTAATAGAATAACTGTGGGGCCAGATTTTGCAAAAATTAGCTCAGAAACCTCTCCAC
JMSF045F05+           CGGCTAATAGAATAACTGTGGGGCCAGATTTTGCAAAAATTAGCTCAGAAACCTCTCCAC
                      ____________________________________________________________
consensus             CGGCTAATAGAATAACTGTGGGGCCAGATTTTGCAAAAATTAGCTCAGAAACCTCTCCAC
 
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JMSF038A18+           CCATCAGTTTCACAAGTTCGTCATGCACAATTTTAACCATTTGCTGATCTGGTCTCACTC
JMSF045F05+           CCATCAGTTTCACAAGTTCGTCATGCACAATTTTAACCATTTGCTGATCTGGTCTCACTC
                      ____________________________________________________________
consensus             CCATCAGTTTCACAAGTTCGTCATGCACAATTTTAACCATTTGCTGATCTGGTCTCACTC
 
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JMSF038A18+           CTCGAATCAAGCCAGTGCCAACAGCTTGATCACTAATAGATTGAACAAATCTTCTCACAA
JMSF045F05+           CTCGAATCAAGCCAGTGCCAACAGCTTGATCACTAATAGATTGAACAAATCTTCTCACAA
                      ____________________________________________________________
consensus             CTCGAATCAAGCCAGTGCCAACAGCTTGATCACTAATAGATTGAACAAATCTTCTCACAA
 
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JMSF038A18+           CCGGAAGACTAACATCTGCCTCTAGTAGAGCCCTCCTAATGTCTCTCATAGGTTCAACAA
JMSF045F05+           CCGGAAGACTAACATCTGCCTCTAGTAGAGCCCTCCTAATGTCTCTCATAGGTTCAACAA
                      ____________________________________________________________
consensus             CCGGAAGACTAACATCTGCCTCTAGTAGAGCCCTCCTAATGTCTCTCATAGGTTCAACAA
 
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JMSF038A18+           TGTTTTCCTTGTTCAAGACCTCTTCCCCTCTAAGCTTGGTCCAGGCGGATTCAAGTCCGG
JMSF045F05+           TGTTTTCCTTGTTCAAGACCTCTTCCCCTCTAAGCTTGGTCCAGGCGGATTCAAGTCCGG
                      ____________________________________________________________
consensus             TGTTTTCCTTGTTCAAGACCTCTTCCCCTCTAAGCTTGGTCCAGGCGGATTCAAGTCCGG
 
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JMSF038A18+           TGGTGAGCTGCCCGAACATTTCAGCTCTGATCACACCGCGCATTTCCCTTCTGAAACTCA
JMSF045F05+           TGGTGAGCTGCCCGAACATTTCAGCTCTGATCACACCGCGCATTTCCCTTCTGAAACTCA
                      ____________________________________________________________
consensus             TGGTGAGCTGCCCGAACATTTCAGCTCTGATCACACCGCGCATTTCCCTTCTGAAACTCA
 
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JMSF038A18+           CTACATTCTTGGAATTTATAAACCTCCACGCCTCTCTGGTGAATGAGTTTCGAGAAGAGA
JMSF045F05+           CTACATTCTTGGAATTTATAAACCTCCACGCCTCTCTGGTGAATGAGTTTCGAGAAGAGA
JMSF004K24+                                            CTCTGGTGAATGAGTTTCGAGAAGAGA
                      ____________________________________________________________
consensus             CTACATTCTTGGAATTTATAAACCTCCACGCCTCTCTGGTGAATGAGTTTCGAGAAGAGA
 
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JMSF038A18+           AAGAGAGGGAGTGGGTGGAAGCAGGCCAAGAAGAAGGAAGAGAAAGATAGGAGGTTTTGG
JMSF045F05+           AAGAGAGGGAGTGGGTGGAAGCAGGCCAAGAAGAAGGAAGAGAAAGATAGGAGGTTTTGG
JMSF004K24+           AAGAGAGGGAGTGGGTGGAAGCAGGCCAAGAAGAAGGAAGAGAAAGATAGGAGGTTTTGG
                      ____________________________________________________________
consensus             AAGAGAGGGAGTGGGTGGAAGCAGGCCAAGAAGAAGGAAGAGAAAGATAGGAGGTTTTGG
 
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JMSF038A18+           GATTTGAGAGGGAGATTTTGGTGAGCGAAGGTGAGAAATGGCGGGAAGCAACGGTGGACG
JMSF045F05+           GATTTGAGAGGGAGATTTTGGTGAGCGAAGGTGAGAAATGGCGGGAAGCAACGGTGGACG
JMSF004K24+           GATTTGAGAGGGAGATTTTGGTGAGCGAAGGTGAGAAATGGCGGGAAGCAACGGTGGACG
                      ____________________________________________________________
consensus             GATTTGAGAGGGAGATTTTGGTGAGCGAAGGTGAGAAATGGCGGGAAGCAACGGTGGACG
 
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JMSF038A18+           AGAAAGTTTCCATGGGGATTTTATTTATTTTCCGATGGCCGGAAATGGAAGAGTTTCCGG
JMSF045F05+           AGAAAGTTTCCATGGGGATTTTATTTATTTTCCGATGGCCGGAAATGGAAGAGTTTCCGG
JMSF004K24+           AGAAAGTTTCCATGGGGATTTTATTTATTTTCCGATGGCCGGAAATGGAAGAGTTTCCGG
                      ____________________________________________________________
consensus             AGAAAGTTTCCATGGGGATTTTATTTATTTTCCGATGGCCGGAAATGGAAGAGTTTCCGG
 
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JMSF038A18+           CTGTTTCTCAGTCTAACATGAAACTCTCCGA                             
JMSF045F05+           CTGTTTCTCAGTCTAACATGAAACTCTCCGA                             
JMSF004K24+           CTGTTTCTCAGTCTAACATGAAACTCTCCGAACAGTGTTGAGTCATCGGAGATTCTGGTC
                      ____________________________________________________________
consensus             CTGTTTCTCAGTCTAACATGAAACTCTCCGAACAGTGTTGAGTCATCGGAGATTCTGGTC