Contig 013220:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009H12Sequence551013220 (4)ref|XP_006344289.1|6e-45PREDICTED: dnaJ homolog subfamily B member 1-like [Solanum tuberosum]708009661 (3)ref|XP_004236995.1|1e-53PREDICTED: dnaJ homolog subfamily B member 1-like [Solanum lycopersicum]
JMFF014J18Sequence554013220 (4)ref|XP_006344289.1|2e-45PREDICTED: dnaJ homolog subfamily B member 1-like [Solanum tuberosum]818009661 (3)ref|XP_004236995.1|4e-78PREDICTED: dnaJ homolog subfamily B member 1-like [Solanum lycopersicum]
JMFF032I17Sequence573013220 (4)ref|XP_004236995.1|7e-49PREDICTED: dnaJ homolog subfamily B member 1-like [Solanum lycopersicum]803009661 (3)ref|XP_004236995.1|2e-74PREDICTED: dnaJ homolog subfamily B member 1-like [Solanum lycopersicum]
JMSF004C02Sequence329013220 (4)ref|XP_009803169.1|2e-17PREDICTED: dnaJ homolog subfamily B member 1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF014J18+                      AGCCTTTATAAAGCTCCTCCAAGCTACACGGCAGCAAGTTCTCCACAGG
JMFF009H12+                         CTTTATAAAGCTCCTCCAAGCTACACGGCAGCAAGTTCTCCACAGG
                      ____________________________________________________________
consensus                        AGCCTTTATAAAGCTCCTCCAAGCTACACGGCAGCAAGTTCTCCACAGG
 
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JMFF014J18+           CGCCGCCTTCCGCGGCGTTCCTCTGTTACCACCGTCATGAGCGGGGCTACCTTTATAAAT
JMFF009H12+           CGCCGCCTTCCGCGGCGTTCCTCTGTTACCACCGTCATGAGCGGGGCTACCTTTATAAAT
                      ____________________________________________________________
consensus             CGCCGCCTTCCGCGGCGTTCCTCTGTTACCACCGTCATGAGCGGGGCTACCTTTATAAAT
 
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JMFF014J18+           TCCGTCCGGCCGACCGAAAAACTCGGCGAATATCTTCCGCATCACGCGGATCGTACTTAA
JMFF009H12+           TCCGTCCGGCCGACCGAAAAACTCGGCGAATATCTTCCGCATCACGCGGATCGTACTTAA
                      ____________________________________________________________
consensus             TCCGTCCGGCCGACCGAAAAACTCGGCGAATATCTTCCGCATCACGCGGATCGTACTTAA
 
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JMFF014J18+           ATCCCCTTCCACCGCCGCCGCTCACACCCGTCGGGGACGCCGGATCGAATTGGCCGGATT
JMFF009H12+           ATCCCCTTCCACCGCCGCCGCTCACACCCGTCGGGGACGCCGGATCGAATTGGCCGGATT
JMFF032I17+                                                    GGATCGAATTGGCCGGATT
                      ____________________________________________________________
consensus             ATCCCCTTCCACCGCCGCCGCTCACACCCGTCGGGGACGCCGGATCGAATTGGCCGGATT
 
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JMFF014J18+           TCAAAACCTCCTCGCCGTACAAATCATAGATCTGCCGCTTGTGAGAGTTGCTGAGCACAT
JMFF009H12+           TCAAAACCTCCTCGCCGTACAAATCATAGATCTGCCGCTTGTGAGAGTTGCTGAGCACAT
JMFF032I17+           TCAAAACCTCCTCGCCGTACAAATCATAGATCTGCCGCTTGTGAGAGTTGCTGAGCACAT
                      ____________________________________________________________
consensus             TCAAAACCTCCTCGCCGTACAAATCATAGATCTGCCGCTTGTGAGAGTTGCTGAGCACAT
 
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JMFF014J18+           CGTACGCCTCCGATATCTGTTTGAACTTCGCCTCCGCTTCCTTCTTGTTCTGGCTGTTCT
JMFF009H12+           CGTACGCCTCCGATATCTGTTTGAACTTCGCCTCCGCTTCCTTCTTGTTCTGGCTGTTCT
JMFF032I17+           CGTACGCCTCCGATATCTGTTTGAACTTCGCCTCCGCTTCCTTCTTGTTCTGGCTGTTCT
JMSF004C02+                                          CTCCGCTTCCTTCTTGTTCTGGCTGTTCT
                      ____________________________________________________________
consensus             CGTACGCCTCCGATATCTGTTTGAACTTCGCCTCCGCTTCCTTCTTGTTCTGGCTGTTCT
 
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JMFF014J18+           TATCCGGATGCCACTTCATCGCCAGCCGCCGGTACGCCTTCTTCAAATCTTCTTCGTTCG
JMFF009H12+           TATCCGGATGCCACTTCATCGCCAGCCGCCGGTACGCCTTCTTCAAATCTTCTTCGTTCG
JMFF032I17+           TATCCGGATGCCACTTCATCGCCAGCCGCCGGTACGCCTTCTTCAAATCTTCTTCGTTCG
JMSF004C02+           TATCCGGATGCCACTTCATCGCCAGCCGCCGGTACGCCTTCTTCAAATCTTCTTCGTTCG
                      ____________________________________________________________
consensus             TATCCGGATGCCACTTCATCGCCAGCCGCCGGTACGCCTTCTTCAAATCTTCTTCGTTCG
 
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JMFF014J18+           CATTCTTCGAAACTCTGAGTATATTGTAGTAATCCACCCCCATCTCCTCACCGTCACAAT
JMFF009H12+           CATTCTTCGAAACTCTGAGTATATTGTAGTAATCCACCCCCATCTCCTCACCGTCACAAT
JMFF032I17+           CATTCTTCGAAACTCTGAGTATATTGTAGTAATCCACCCCCATCTCCTCACCGTCACAAT
JMSF004C02+           CATTCTTCGAAACTCTGAGTATATTGTAGTAATCCACCCCCATCTCCTCACCGTCACAAT
                      ____________________________________________________________
consensus             CATTCTTCGAAACTCTGAGTATATTGTAGTAATCCACCCCCATCTCCTCACCGTCACAAT
 
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JMFF014J18+           CGAGAAGCTCGCGAGTACGGGAATTCGTGCGCGTATATATACACACAACTCTCAAACGAA
JMFF009H12+           CGAGAAGCTCGCGAGTACGGGAATTCGTGCGCGTATATATACACACAACTCTCAAACGAA
JMFF032I17+           CGAGAAGCTCGCGAGTACGGGAATTCGTGCGCGTATATATACATACAACTCTCAAACGAA
JMSF004C02+           CGAGAAGCTCGCGAGTACGGGAATTCGTGCGCGTATATATACACACAACTCTCAAACGAA
                      ____________________________________________________________
consensus             CGAGAAGCTCGCGAGTACGGGAATTCGTGCGCGTATATATACACACAACTCTCAAACGAA
 
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JMFF014J18+           AATGTAGAACTCAAGGGAATCCAAC                                   
JMFF009H12+           AATGTAGAACTCAAGGGAATTCAAC                                   
JMFF032I17+           AATGTAGAACTCAAGGGAATCCAACGGGGAATCTCCGGCGAGACGAGACGGCCGGAATTA
JMSF004C02+           AATGTAGAACTCAAGGGAATCCAACGGGGAATCTCCGGCGAGACGAGACGGCCGGAATTA
                      ____________________________________________________________
consensus             AATGTAGAACTCAAGGGAATCCAACGGGGAATCTCCGGCGAGACGAGACGGCCGGAATTA
 
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JMFF032I17+           AAAGGATTGAGGAAACGAAAGCGCAGGGTAGAGGAAAGGCAGAGTTTGAGCTAAGATAC 
JMSF004C02+           AAAGGATTGAGGAAACGAAAGCGCAGGGTAGAGGAAAGGCAGAGTTTGAGCTAAGATACC
                      ____________________________________________________________
consensus             AAAGGATTGAGGAAACGAAAGCGCAGGGTAGAGGAAAGGCAGAGTTTGAGCTAAGATACC