| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003P10 | Sequence | 273 | 013218 (5) | gb|AAG24863.1| | 2e-38 | CONSTANS-like protein [Ipomoea nil] | 729 | 005806 (5) | gb|AAG24863.1| | 3e-67 | CONSTANS-like protein [Ipomoea nil] |
| JMSF004J01 | Sequence | 381 | 013218 (5) | gb|AAG24863.1| | 2e-56 | CONSTANS-like protein [Ipomoea nil] | |||||
| JMSF006D12 | Sequence | 271 | 013218 (5) | gb|AAG24863.1| | 5e-48 | CONSTANS-like protein [Ipomoea nil] | |||||
| JMSF018C16 | Sequence | 429 | 013218 (5) | gb|AAG24863.1| | 7e-69 | CONSTANS-like protein [Ipomoea nil] | 773 | 005806 (5) | gb|AAG24863.1| | 4e-67 | CONSTANS-like protein [Ipomoea nil] |
| JMSF044M14 | Sequence | 771 | 013218 (5) | gb|AAG24863.1| | 1e-106 | CONSTANS-like protein [Ipomoea nil] | 777 | 005806 (5) | gb|AAG24863.1| | 5e-67 | CONSTANS-like protein [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
JMSF044M14+ GA
____________________________________________________________
consensus GA
. : . : . : . : . : . :
JMSF044M14+ TTTATGCTATACTTGTCCTCAAACAGGTTGTTGTGGCATGAACTAAACTCAGCAAGGTCC
____________________________________________________________
consensus TTTATGCTATACTTGTCCTCAAACAGGTTGTTGTGGCATGAACTAAACTCAGCAAGGTCC
. : . : . : . : . : . :
JMSF044M14+ AAGTAAGCATCCACAGCCTTTACTGCGCATGACATCTCGTTATTGTTATTGTTGCCTCCT
____________________________________________________________
consensus AAGTAAGCATCCACAGCCTTTACTGCGCATGACATCTCGTTATTGTTATTGTTGCCTCCT
. : . : . : . : . : . :
JMSF044M14+ TTACACATGTTTGTACTGTTGTTGCTCTTAACAGGATTAGGATTGGGATTGGGATTAGGA
____________________________________________________________
consensus TTACACATGTTTGTACTGTTGTTGCTCTTAACAGGATTAGGATTGGGATTGGGATTAGGA
. : . : . : . : . : . :
JMSF044M14+ TTAAGCAGCAGCCAAGAAGCCGCCTCGTCTTCATCTTCATCCATGGTAGTTTCCTCTGCA
____________________________________________________________
consensus TTAAGCAGCAGCCAAGAAGCCGCCTCGTCTTCATCTTCATCCATGGTAGTTTCCTCTGCA
. : . : . : . : . : . :
JMSF044M14+ TCCTGAGTCAAGAACCCATTGTCCTCCTCCGCCGCATCTCCCGTCAGCCCAACCATCATG
____________________________________________________________
consensus TCCTGAGTCAAGAACCCATTGTCCTCCTCCGCCGCATCTCCCGTCAGCCCAACCATCATG
. : . : . : . : . : . :
JMSF018C16+ GGTTACTGGTGGGAGGCCCATAAAGGGTGCCTGAAATGGGCAGA
JMSF044M14+ GAACTCTCCCTGCAGGGGTTACTGGTGGGAGGCCCATAAAGGGTGCCTGAAATGGGCAGA
____________________________________________________________
consensus GAACTCTCCCTGCAGGGGTTACTGGTGGGAGGCCCATAAAGGGTGCCTGAAATGGGCAGA
. : . : . : . : . : . :
JMSF018C16+ ATCGGGACACGGTGGTGGCGGCGTGCCAGCGGGTTGGCGGAGTGGATATCCGAGTCGCAG
JMSF004J01+ GGACACGGTGGTGGCGGCGTGCCAGCGGGTTGGCGGAGTGGATATCCGAGTCGCAG
JMSF044M14+ ATCGGGACACGGTGGTGGCGGCGTGCCAGCGGGTTGGCGGAGTGGATATCCGAGTCGCAG
____________________________________________________________
consensus ATCGGGACACGGTGGTGGCGGCGTGCCAGCGGGTTGGCGGAGTGGATATCCGAGTCGCAG
. : . : . : . : . : . :
JMSF018C16+ GCCGCACAAAGCGACGCCGCATCCGCCTTACATATGACCGTGGCCGTAGCGCTCTCGCAC
JMSF006D12+ CTCGCAC
JMSF004J01+ GCCGCACAAAGCGACGCCGCATCCGCCTTACATATGACCGTGGCCGGAGCGCTCTCGCAC
JMSF044M14+ GCCGCACAAAGCGACGCCGCATCCGCCTTACATATGACCGTGGCCGGAGCGCTCTCGCAC
____________________________________________________________
consensus GCCGCACAAAGCGACGCCGCATCCGCCTTACATATGACCGTGGCCGGAGCGCTCTCGCAC
. : . : . : . : . : . :
JMSF018C16+ GCCTCACAAACCAGCACGCGCTCGTGTCTCCCCGCCACGGTGTTGGCGCCATGCACGCGG
JMSF006D12+ GCNTCACAAACCAGCACGCGCTCGTGTCTCCCCGCCACGGTGTTGGCGCCATGCACGCGG
JMSF004J01+ GCCTCACAAACCAGCACGCGCTCGTGTCTCCCCGCCACGGTGTTGGCGCCATGCACGCGG
JMSF044M14+ GCCTCACAAACCAGCACGCGCTCGTGTCTCCCCGCCACGGTGTTGGCGCCATGCACGCGG
JMSF003P10+ CCCGCCACGGTGTNGGCGCCATGCACGCGG
____________________________________________________________
consensus GCCTCACAAACCAGCACGCGCTCGTGTCTCCCCGCCACGGTGTTGGCGCCATGCACGCGG
. : . : . : . : . : . :
JMSF018C16+ GCGTCGCAGCCGCCGCAGAGGTAAGCCAAGTCCGCCCGGCAGTAAACGCTGCATGCCGCG
JMSF006D12+ GCGTCGCAGCCGCCGCAGAGGTAAGCCAAGTCCGCCCGGCAGTAAACGCTGCATGCCGCG
JMSF004J01+ GCGTCGCAGCCGCCGCAGAGGTAAGCCAAGTCCGCCCGGCAGTAAACGCTGCATGCCGCG
JMSF044M14+ GCGTCGCAGCCGCCGCAGAGGTAAGCCAAGTCCGCCCGGCAGTAAACGCTGCATGCCGCG
JMSF003P10+ GCGTCGCAGCCGCCGCAGAGGTAAGCCAAGTCCGCCCGGCAGTAAACGCTGCATGCCGCG
____________________________________________________________
consensus GCGTCGCAGCCGCCGCAGAGGTAAGCCAAGTCCGCCCGGCAGTAAACGCTGCATGCCGCG
. : . : . : . : . : . :
JMSF018C16+ GAACGGCATATGTCGCAGACCCGAGCCCAGTTCTGCTTGTTGCCACTTCTGCTGCCGCTG
JMSF006D12+ GAACGGCATATGTCGCAGACCCGAGCCCAGTTCTGCTTGTTGCCACTTCTGCTGCCGCTG
JMSF004J01+ GAACGGCATATGTCGCAGACCCGAGCCCAGTTCTGCTTGTTGCCACTTCTGCTGCCGCTG
JMSF044M14+ GAACGGCATATGTCGCAGACCCGAGCCCAGTTCTGCTTGTTGCCACTTCTGCTGCCGCTG
JMSF003P10+ GAACGGCATATGTCGCAGACCCGAGCCCAGTTCTGCTTGTTGCCACTTCTGCTGCCGCTG
____________________________________________________________
consensus GAACGGCATATGTCGCAGACCCGAGCCCAGTTCTGCTTGTTGCCACTTCTGCTGCCGCTG
. : . : . : . : . : . :
JMSF018C16+ CTGCTCCCAATGGTAACGTCCAAATCCAAAACCTCACAGCTCTCTTCCTTCAACATTGGT
JMSF006D12+ CTGCTCCCAATGGTAACGTCCAAATCCAAAACCTCACAGCTCTCTTCCTTCAACATTGGT
JMSF004J01+ CTGCTCCCAATGGTAACGTCCAAATCCAAAACCTCACAGCTCTCTTCCTTCAACATTGGT
JMSF044M14+ CTGCTCCCAATGGTAACGTCCAAATCCAAAACCTCACAGCTCTCTTCCTTCAACATTGG-
JMSF003P10+ CTGCTCCCAATGGTAACGTCCAAATCCAAAACCTCACAGCTCTCTTCCTTCAACATTGGT
____________________________________________________________
consensus CTGCTCCCAATGGTAACGTCCAAATCCAAAACCTCACAGCTCTCTTCCTTCAACATTGGT
. : . : . : . : . : . :
JMSF018C16+ TTTTTT
JMSF006D12+ TTTTT
JMSF004J01+ TTTTTT
JMSF044M14+ TTTTTTTGAGTGTTTCCTCGCACACACGTAAGACTACACACACTCAAAC
JMSF003P10+ TTTTTTTGAGTGTTTCCTCGCACACACGTAAGACTACACACACTCAAACGTATTTATTTC
____________________________________________________________
consensus TTTTTTTGAGTGTTTCCTCGCACACACGTAAGACTACACACACTCAAACGTATTTATTTC