| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039P05 | Sequence | 405 | 013215 (9) | emb|CDP02629.1| | 2e-11 | unnamed protein product [Coffea canephora] | 734 | 013215 (9) | ref|XP_009781342.1| | 1e-25 | PREDICTED: 60S ribosomal protein L23a-like [Nicotiana sylvestris] |
| JMFN006I06 | Sequence | 610 | 013215 (9) | ref|XP_009589484.1| | 3e-13 | PREDICTED: 60S ribosomal protein L23a-like [Nicotiana tomentosiformis] | |||||
| JMSF002D22 | Sequence | 346 | 013215 (9) | 723 | 013215 (9) | ref|XP_009781342.1| | 8e-26 | PREDICTED: 60S ribosomal protein L23a-like [Nicotiana sylvestris] | |||
| JMSF003K09 | Sequence | 481 | 013215 (9) | 718 | 013215 (9) | ref|XP_009781342.1| | 8e-26 | PREDICTED: 60S ribosomal protein L23a-like [Nicotiana sylvestris] | |||
| JMSF009N18 | Sequence | 340 | 013215 (9) | 722 | 013215 (9) | ref|XP_009781342.1| | 2e-25 | PREDICTED: 60S ribosomal protein L23a-like [Nicotiana sylvestris] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF009N18- AAGATCATAACAAAAAACTCCAAATCATTCAAGGGAAACCAAGGGT
rJMSF003K09- AATCATTCAAGGGAAACCAAGGGT
rJMFF039P05- GT
rJMSF002D22- GT
____________________________________________________________
consensus AAGATCATAACAAAAAACTCCAAATCATTCAAGGGAAACCAAGGGT
. : . : . : . : . : . :
rJMSF009N18- TTTTTTCTAGGATGAGCAGTCAATCAGGATCTAGATTTCACTTGTGTGCAAGGAAGAATT
rJMSF003K09- TTTTTTCTAGGATGAGCAGTCAATCAGGATCTAGATTTCACTTGTGTGCAAGGAAGAATT
rJMFF039P05- TTTTTTCTAGGATGAGCAGTCAATCAGGATCTAGATTTCACTTGTGTGCAAGGAAGAATT
rJMSF002D22- TTTTTTCTAGGATGAGCAGTCAATCAGGATCTAGATTTCACTTGTGTGCAAGGAAGAATT
____________________________________________________________
consensus TTTTTTCTAGGATGAGCAGTCAATCAGGATCTAGATTTCACTTGTGTGCAAGGAAGAATT
. : . : . : . : . : . :
rJMSF009N18- AACATTTTGATACAAACTCAGGTGAAGAAGCAAAGAACCCATTTTTGTTCTAAATGACTT
rJMSF003K09- AACATTTTGATACAAACTCAGGTGAAGAAGCAAAGAACCCATTTTTGTTCTAAATGACTT
rJMFF039P05- AACATTTTGATACAAACTCAGGTGAAGAAGCAAAGAACCCATTTTTGTTCTAAATGACTT
rJMSF002D22- AACATTTTGATACAAACTCAGGTGAAGAAGCAAAGAACCCATTTTTGTTCTAAATGACTT
____________________________________________________________
consensus AACATTTTGATACAAACTCAGGTGAAGAAGCAAAGAACCCATTTTTGTTCTAAATGACTT
. : . : . : . : . : . :
rJMSF009N18- TAATTCTTTTAGCCACATCCACTGCACTTTGATCTGGTGCCAATATAAGGAGTGCTTTCT
rJMSF003K09- TAATTCTTTTAGCCACATCCACTGCACTTTGATCTGGTGCCAATATAAGGAATGCTTTCT
rJMFF039P05- TAATTCTTTTAGCCACATCCACTGCACTTTGATCTGGTGCCAATATAAGGAATGCTTTCT
rJMSF002D22- TAATTCTTTTAGCCACATCCACTGCACTTTGATCTGGTGCCAATATAAGGAATGCTTTCT
____________________________________________________________
consensus TAATTCTTTTAGCCACATCCACTGCACTTTGATCTGGTGCCAATATAAGGAATGCTTTCT
. : . : . : . : . : . :
rJMSF009N18- TGGTTCCATCAGGCAGGATCGACGTGTTTACCTTCTTGATCTTAATCTTGAATATCTTCG
rJMSF003K09- TGGTTCCATCAGGCAGGATCGACGTGTTTACCTTCTTGATCTTAATCTTGAATATCTTCG
JMFF039P05+ TCG
rJMFF039P05- TGGTTCCATCAGGCAGGATCGACGTGTTTACCTTCTTGATCTTAATCTTGAATATCTTCG
rJMSF002D22- TGGTTCCATCAGGCAGGATCGACGTGTTTACCTTCTTGATCTTAATCTTGAATATCTTCG
JMFN006I06+ TCG
____________________________________________________________
consensus TGGTTCCATCAGGCAGGATCGACGTGTTTACCTTCTTGATCTTAATCTTGAATATCTTCG
. : . : . : . : . : . :
rJMSF009N18- AGGCAGAATCCTTTATGATTGTCTTGTCAGCACGCTTGTCGACAGCAAAAACCAGGGTGT
rJMSF003K09- AGGCAGAATCCTTTATGATTGTCTTGTCAGCACGCTTGTCGACAGCAAAAACCAGGGTGT
JMFF039P05+ AGGCAGAATCCTTTATGATTGTCTNGTCAGCACGCTTGTCGACAGCAAAAACCAGGGTGT
rJMFF039P05- AGGCAGAATCCTTTATGATTGTCTTGTCAGCACGCTTGTCGACAGCAAAAACCAGGGTGT
rJMSF002D22- AGGCAGAATCCTTTATGATTGTCTTGTCAGCACGCTTGTCGACAGCAAAAACCAGGGTGT
JMFN006I06+ AGGCAGAATCCTTTATGATTGTCTTGTCAGCACGCTTGTCGACAGCAAAAACCAGGGTGT
____________________________________________________________
consensus AGGCAGAATCCTTTATGATTGTCTTGTCAGCACGCTTGTCGACAGCAAAAACCAGGGTGT
. : . : . : . : . : . :
rJMSF009N18- TTTTCTGTAGAATATTTTTCATTCCAGCCTCGGTGACGATGGGATACTTGAGAATCTGCG
rJMSF003K09- TTTTCTGTAGAATATTTTTCATTCCAGCCTCGGTGACGATGGGATACTTGAGAATCTGCG
JMFF039P05+ TTTTCTGTAGAATATTTTTCATTCCAGCCTCGGTGACGATGGGATACTTGAGAATCTGCG
rJMFF039P05- TTTTCTGTAGAATATTTTTCATTCCAGCCTCGGTGACGATGGGATACTTGAGAATCTGCG
rJMSF002D22- TTTTCTGTAGAATATTTTTCATTCCAGCCTCGGTGACGATGGGATACTTGAGAATCTGCG
JMFN006I06+ TTTTCTGTAGAATATTTTTCATTCCAGCCTCGGTGACGATGGGATACTTGAGAATCTGCG
JMSF003K09+ TGCG
____________________________________________________________
consensus TTTTCTGTAGAATATTTTTCATTCCAGCCTCGGTGACGATGGGATACTTGAGAATCTGCG
. : . : . : . : . : . :
rJMSF009N18- AATAATCTAGCGTTGTGGTCCTTTGAGAAGCAAGGCTGTTGAGAAGTTTGGGGTTCCTTC
rJMSF003K09- AATAATCTAGCGTTGTGGTCCTTTGAGAAGCAAGGCTGTTGAGAAGTTTGGGGTTCCTTC
JMFF039P05+ AATAATCTAGCGTTGTGGTCCTTTGAGAAGCAAGGCTGTTGAGAAGTTTGGGGTTCCTTC
rJMFF039P05- AATAATCTAGCGTTGTGGTCCTTTGAGAAGCAAGGCTGTTGAGAAGTTTGGGGTTCCTTC
rJMSF002D22- AATAATCTAGCGTTGTGGTCCTTTGAGAAGCAAGGCTGTTGAGAAGTTTGGGGTTCCTTC
JMFN006I06+ AATAATCTAGCGTTGTGGTCCTTTGAGAAGCAAGGCTGTTGAGAAGTTTGGGGTTCCTTC
JMSF003K09+ AATAATCNAGCGTTGTGGTCCTTTGAGAAGCAAGGCTGTTGAGAAGTTTGGGGTTCCTTC
____________________________________________________________
consensus AATAATCTAGCGTTGTGGTCCTTTGAGAAGCAAGGCTGTTGAGAAGTTTGGGGTTCCTTC
. : . : . : . : . : . :
rJMSF009N18- CCTTCTTCGATGTCCTAGCTGGCTTGGACGACGTTTTGACTTCTAAAACCCCAATATTCA
rJMSF003K09- CCTTCTTCGATGTCCTAGCTGGCTTGGACGACGTTTTGACTTCTAAAACCCCAATATTCA
JMFF039P05+ CCTTCTTCGATGTCCTAGCTGGCTTGGACGACGTTTTGACTTCTAAAACCCCAATATTCA
rJMFF039P05- CCTTCTTCGATGTCCTAGCTGGCTTGGACGACGTTTTGACTTCTAAAACCCCAATATTCA
rJMSF002D22- CCTTCTTCGATGTCCTAGCTGGCTTGGACGACGTTTTGACTTCTAAAACCCCAATATTCA
JMSF002D22+ ATATTCA
JMFN006I06+ CCTTCTTCGATGTCCTAGCTGGCTTGGACGACGTTTTGACTTCTAAAACCCCAATATTCA
JMSF003K09+ CCTTCTTCGATGTCCTAGCTGGCTTGGACGACGTTTTGACTTCTAAAACCCCAATATTCA
____________________________________________________________
consensus CCTTCTTCGATGTCCTAGCTGGCTTGGACGACGTTTTGACTTCTAAAACCCCAATATTCA
. : . : . : . : . : . :
rJMSF009N18- GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
rJMSF003K09- GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
JMFF039P05+ GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
rJMFF039P05- GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
rJMSF002D22- GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
JMSF002D22+ GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
JMFN006I06+ GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
JMSF009N18+ GATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
JMSF003K09+ GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
____________________________________________________________
consensus GAGTCTCTTTAGGTGGATCGAGATATTCTGGCTCGAACGTTGTCTCAGATTTGGTTTCAC
. : . : . : . : . : . :
rJMSF009N18- TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
rJMSF003K09- TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
JMFF039P05+ TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
rJMFF039P05- TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
rJMSF002D22- TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
JMSF002D22+ TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
JMFN006I06+ TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
JMSF009N18+ TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
JMSF003K09+ TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
____________________________________________________________
consensus TGGAACTCTCGACTTGAGGAGTCAGGGAATGCACCAAAACCCTTCGAAGAAAATGGGAGT
. : . : . : . : . : . :
rJMSF009N18- TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
rJMSF003K09- TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
JMFF039P05+ TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAAC
rJMFF039P05- TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
rJMSF002D22- TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
JMSF002D22+ TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
JMFN006I06+ TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
JMSF009N18+ TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
JMSF003K09+ TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
____________________________________________________________
consensus TCCCGGAATGTAGGCTTACAGGCTCGGTATGTGAAGAGTAACCTATTAAAGACCGGAGCT
. : . : . : . : . : . :
rJMSF009N18- TT
rJMSF003K09- TTCTAG
rJMFF039P05- TTCTAGCAGGTAAAGCAGGGTCCAGGGCGCCACCGGAGAAGGATACCTTGTAAGG
rJMSF002D22- TTCTAGCAGGTAAAGCAGGGTCCAGGGCGCCACCGGAGAAGGATACCTTGTAAGGAA
JMSF002D22+ TTCTAGCAGGTAAAGCAGGGTCCAGGGCGCCACCGGAGAAGGATACCTTGTAAGGAAGGA
JMFN006I06+ TTCTAGCAGGTAAAGCAGGGTCCAGGGCGCCACCGGAGAAGGATACCTTGTAAGGAAGGA
JMSF009N18+ TT-TAGCAGGTAAAGCAGGGTCCAGGGCGCCACCGGAGAAGGATACCTTGTAAGGAAGGA
JMSF003K09+ TT-C--TAGGTAAAGCAGGGTCCAGGGCGCCACCGGAGAAGGATACCTTGTAAGGAAGGA
____________________________________________________________
consensus TTCTAGCAGGTAAAGCAGGGTCCAGGGCGCCACCGGAGAAGGATACCTTGTAAGGAAGGA
. : . : . : . : . : . :
JMSF002D22+ AAGTCCTCGTCGCTGGGCCGGACGGCGTAAAGGTGCGATCTTGTCGCTGGGTCGGAGAAG
JMFN006I06+ AAGTCCTCGTCGCTGGGCCGGACGGCGTAAAGGTGCGATCTTGTCGCTGGGTCGGAGAAG
JMSF009N18+ AAGTCCTCGTCGCTGGGCCGGACGGCGTAAAGGTGCGATCTTGTCGCTGGGTCGGAGAAG
JMSF003K09+ AAGTCCTCGTCGCTGGGCCGGACGGCGTAAAGGTGCGATCTTGTCGCTGGGTCGGAGAAG
____________________________________________________________
consensus AAGTCCTCGTCGCTGGGCCGGACGGCGTAAAGGTGCGATCTTGTCGCTGGGTCGGAGAAG
. : . : . : . : . : . :
JMSF002D22+ AACCAAACACCGGAAGGGTAATTGTAGACGCCATTATC
JMFN006I06+ AACCAAACACCGGAAGGGTAATTGTAGACGCCATTATC
JMSF009N18+ AACCAAACACCGGAAGGGTAATTGTAGACGCCATTATCACTTCAGATAATCGGGT
JMSF003K09+ AACCAAACACCGGAAGGGTAATTGTAGACGCCATTATCACTTCAGATAATCGGGTGAAGC
____________________________________________________________
consensus AACCAAACACCGGAAGGGTAATTGTAGACGCCATTATCACTTCAGATAATCGGGTGAAGC