Contig 013212:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035G21Sequence584013212 (3)ref|XP_004235014.1|1e-13PREDICTED: polyadenylate-binding protein-interacting protein 11 [Solanum lycope650000361 (5)gb|KJB39555.1|5e-50hypothetical protein B456_007G019000 [Gossypium raimondii]
JMFF039I12Sequence583013212 (3)ref|XP_004235014.1|5e-19PREDICTED: polyadenylate-binding protein-interacting protein 11 [Solanum lycope671000361 (5)gb|KJB39555.1|1e-57hypothetical protein B456_007G019000 [Gossypium raimondii]
JMSF003I02Sequence346013212 (3)763000361 (5)ref|XP_011075899.1|1e-110PREDICTED: polyadenylate-binding protein-interacting protein 12 [Sesamum indicu

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+                                                    GGAGTTCCCATTACGAAGG
                      ____________________________________________________________
consensus                                                      GGAGTTCCCATTACGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           CCGGAATTAGCCTGCTGCAATACAAAATTGTTAGCAAAGTGCCCTCCACCAGGCGGCAGC
                      ____________________________________________________________
consensus             CCGGAATTAGCCTGCTGCAATACAAAATTGTTAGCAAAGTGCCCTCCACCAGGCGGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           GCCACCACTCTAAGGCTGCCGCCGATGCTGAGAGACGGCGGCACAAACTCCTCCGCCATG
JMFF035G21+                                        GAGAGACGGCGGCACAAACTCCTCCGCCATG
                      ____________________________________________________________
consensus             GCCACCACTCTAAGGCTGCCGCCGATGCTGAGAGACGGCGGCACAAACTCCTCCGCCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           GGATTCAATTTCGAGAGCATTTCTTCCAAATCCCTCATCTCTTTCTCGCTCTTAAACCCT
JMFF035G21+           GGATTCAATTTCGAGAGCATTTCTTCCAAATCCCTCATCTCTTTCTCGCTCTTAAACCCT
                      ____________________________________________________________
consensus             GGATTCAATTTCGAGAGCATTTCTTCCAAATCCCTCATCTCTTTCTCGCTCTTAAACCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           CTCCGACCATCGCCATCCTCCTCGTCAATCTGTACATCTCTCCTCGCATCCAAACCGTTC
JMFF035G21+           CTCCGACCATCGCCATCCTCCTCGTCAATCTGTACATCTCTCCTCGCATCCAAACCGTTC
                      ____________________________________________________________
consensus             CTCCGACCATCGCCATCCTCCTCGTCAATCTGTACATCTCTCCTCGCATCCAAACCGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           ACTTTTGACCGCTGATCGCCCAGCACTCCATTGCCATTCTGCACCGTCTGGGAACTCTGA
JMFF035G21+           ACTTTTGACCGCTGATCGCCCAGCACTCCATTGCCATTCTGCACCGTCTGGGAACTCTGA
                      ____________________________________________________________
consensus             ACTTTTGACCGCTGATCGCCCAGCACTCCATTGCCATTCTGCACCGTCTGGGAACTCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           TCACTCTGCGCACTGCTCTTTGTTGACTGGTCACGATCGGCTGCAACGACGTCGTTCTGC
JMFF035G21+           TCACTCTGCGCACTGCTCTTTGTTGACTGGTCACGATCGGCTGCAACGACGTCGTTCTGC
                      ____________________________________________________________
consensus             TCACTCTGCGCACTGCTCTTTGTTGACTGGTCACGATCGGCTGCAACGACGTCGTTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           ACATTACCGTCGTTCCCATTCTCAACCACCGCCATGATTCTTCAAGAACCTATACGTAGC
JMFF035G21+           ACATTACCGTCGTTCCCATTCTCAACCACCGCCATGATTCTTCAAGAACCTATACGTAGC
JMSF003I02+                         CCCATTCTCAACCACCGCCATGATTCTTCAAGAACCTATACGTAGC
                      ____________________________________________________________
consensus             ACATTACCGTCGTTCCCATTCTCAACCACCGCCATGATTCTTCAAGAACCTATACGTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           CGGACCAAAGATTTTTCCTTTCTACTAGTATGTTCCTTTGATCCTCCTTCCCCGATATGG
JMFF035G21+           CGGACCAAAGATTTTTCCTTTCTACTAGTATGTTCCTTTGATCCTCCTTCCCCGATATGG
JMSF003I02+           CGGACCAAAGATTTTTCCTTTCTACTAGTATGTTCCTTTGATCCTCCTTCCCCGATATGG
                      ____________________________________________________________
consensus             CGGACCAAAGATTTTTCCTTTCTACTAGTATGTTCCTTTGATCCTCCTTCCCCGATATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           GTTCTGCCAAAAACTGATAGAATTTAAATGTTGTCCATTGATGAGTGATTAGAGCTGCTG
JMFF035G21+           GTTCTGCCAAAAACTGATAGAATTTAAATGTTGTCCATTGATGAGTGATTAGAGCTGCTG
JMSF003I02+           GTTCTGCCAAAAACTGATAGAATTTAAATGTTGTCCATTGATGAGTGATTAGAGCTGCTG
                      ____________________________________________________________
consensus             GTTCTGCCAAAAACTGATAGAATTTAAATGTTGTCCATTGATGAGTGATTAGAGCTGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039I12+           AAACTCAAAGAAAGATGTGAGCTT                                    
JMFF035G21+           AAACTCAAAGAAAGATGTGAGCTT                                    
JMSF003I02+           AAACTCAAAGAAAGATGTGAGCTTAGGAATCAAAAGAAAATCAAATACCCAATTTCTGAT
                      ____________________________________________________________
consensus             AAACTCAAAGAAAGATGTGAGCTTAGGAATCAAAAGAAAATCAAATACCCAATTTCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF003I02+           TTTAAAGAGTTTTGGTAGTACTATGATTTTTACTGAGTCTGCAGAGAGAAGAGATGAGTA
                      ____________________________________________________________
consensus             TTTAAAGAGTTTTGGTAGTACTATGATTTTTACTGAGTCTGCAGAGAGAAGAGATGAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF003I02+           GTTGAAGGAGAGAGAGAAAAAGGGTGGGGGTTCTTCGGATCGTCCGTTTAGGCCACTATC
                      ____________________________________________________________
consensus             GTTGAAGGAGAGAGAGAAAAAGGGTGGGGGTTCTTCGGATCGTCCGTTTAGGCCACTATC