Contig 013211:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS143F09Sequence612013211 (2)ref|XP_009777401.1|4e-44PREDICTED: cysteine-rich receptor-like protein kinase 25 isoform X1 [Nicotiana
JMSF003H05Sequence420013211 (2)ref|XP_009598808.1|4e-25PREDICTED: cysteine-rich receptor-like protein kinase 25 isoform X2 [Nicotiana 748017060ref|XP_007025947.1|7e-66Cysteine-rich protein, putative isoform 1 [Theobroma cacao] gb|EOY28569.1| Cyste

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+                                                          TAAACGCAGTGAA
                      ____________________________________________________________
consensus                                                            TAAACGCAGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           GTTAGCTTCTAGAGTCGCAAATTTCTTGCCGGATCCACCGCCGGCGGCTCGAGTGGCCAT
                      ____________________________________________________________
consensus             GTTAGCTTCTAGAGTCGCAAATTTCTTGCCGGATCCACCGCCGGCGGCTCGAGTGGCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           CTGATTCAACGTGTTTCCGACAGCATCCATGAACCTAGCCGGCTGAGAATCGTTCTGTGT
                      ____________________________________________________________
consensus             CTGATTCAACGTGTTTCCGACAGCATCCATGAACCTAGCCGGCTGAGAATCGTTCTGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           ATTATACAGATATATCCCGGGCGACTGGTCGGCTCTCCCGAACATAGAACTGTTGGAGTA
                      ____________________________________________________________
consensus             ATTATACAGATATATCCCGGGCGACTGGTCGGCTCTCCCGAACATAGAACTGTTGGAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           ACGCAACATACAGAAATCGTACCAGACAACAACAGCCCTTTCGTTGGGGCATAGCTGCAG
                      ____________________________________________________________
consensus             ACGCAACATACAGAAATCGTACCAGACAACAACAGCCCTTTCGTTGGGGCATAGCTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           TATCTCTCTGATAGCATTTCTTACACAGGCCCCACAGTCGGAGGTGGAGACATCACCCCG
                      ____________________________________________________________
consensus             TATCTCTCTGATAGCATTTCTTACACAGGCCCCACAGTCGGAGGTGGAGACATCACCCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           GCACATGAACAGGCCGTACGCGGTGTCCCGGGAGTTGTCGCGTCCACCGCCGGCGGTGAA
                      ____________________________________________________________
consensus             GCACATGAACAGGCCGTACGCGGTGTCCCGGGAGTTGTCGCGTCCACCGCCGGCGGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           GCTGTAGAAACCATCTTCGCGGGTGGCATTGGAAGAAAGGGTGGAGAGGAGAACATTGAG
JMSF003H05+                                       TTGGAAGAAAGGGTGGAGAGGAGAACATTGAG
                      ____________________________________________________________
consensus             GCTGTAGAAACCATCTTCGCGGGTGGCATTGGAAGAAAGGGTGGAGAGGAGAACATTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           GTTGGCTCGATAAGTGCTGTTAGGAGCGTAAGTTGAGGTGTTGGGACAGAACTGTCCGAG
JMSF003H05+           GTTGGCTCGATAAGTGCTGTTTGGAGCGTAAGTAGAGGTGTTGGGACACAACTGGCCGAG
                      ____________________________________________________________
consensus             GTTGGCTCGATAAGTGCTGTTTGGAGCGTAAGTTGAGGTGTTGGGACAGAACTGTCCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           AGGTTGAGAGGAAACTCCGGCGAACAGAGTGAGCAGGAAGAAGAAGATGCAGAGGGTGTA
JMSF003H05+           AGGTTGGGAGGAAACTCCGGCGAAGAGAGTGAGCAGGAAGAAGAAGATGCAGAGGGTGTA
                      ____________________________________________________________
consensus             AGGTTGGGAGGAAACTCCGGCGAAGAGAGTGAGCAGGAAGAAGAAGATGCAGAGGGTGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS143F09+           GCCCAGC                                                     
JMSF003H05+           GTCCAGCCCCAGCTGAAAGCATCTGAATTGAGAATCCATAATTGTTTATTATTTTTGTTC
                      ____________________________________________________________
consensus             GTCCAGCCCCAGCTGAAAGCATCTGAATTGAGAATCCATAATTGTTTATTATTTTTGTTC