Contig 013210:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003F14Sequence389013210 (3)ref|XP_006346999.1|6e-14PREDICTED: ATPase family AAA domain-containing protein 3-B-like [Solanum tubero763004180 (3)ref|XP_004233520.1|5e-88PREDICTED: ATPase family AAA domain-containing protein 3C [Solanum lycopersicum
JMSF017O20Sequence243013210 (3)781004180 (3)ref|XP_004233520.1|1e-104PREDICTED: ATPase family AAA domain-containing protein 3C [Solanum lycopersicum
JMSF025G21Sequence678013210 (3)ref|XP_006346999.1|7e-81PREDICTED: ATPase family AAA domain-containing protein 3-B-like [Solanum tubero749004180 (3)ref|XP_004233520.1|2e-96PREDICTED: ATPase family AAA domain-containing protein 3C [Solanum lycopersicum

Alignment

This contig is upended


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JMSF025G21+             CTTATAGTTTCTCGCTCTATTTCAGCTCTCTCTTTCTCTGTTTGCCGTTGCTGAGCTT
                      ____________________________________________________________
consensus               CTTATAGTTTCTCGCTCTATTTCAGCTCTCTCTTTCTCTGTTTGCCGTTGCTGAGCTT
 
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JMSF025G21+           GGATCTGTTCTTCAGTTGCTCGTCTTGATTGTTCTTTTCGTATGGATGACTCCTCTTGCA
                      ____________________________________________________________
consensus             GGATCTGTTCTTCAGTTGCTCGTCTTGATTGTTCTTTTCGTATGGATGACTCCTCTTGCA
 
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JMSF025G21+           TCTTAACCAATTCGGCATTGTGACGTCTTTGAGCCTCATGATCTGTCTGCATTCTTTTCC
                      ____________________________________________________________
consensus             TCTTAACCAATTCGGCATTGTGACGTCTTTGAGCCTCATGATCTGTCTGCATTCTTTTCC
 
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JMSF025G21+           TAGCCAACTCATCTTCATATCTCAGCATTTGTGCCTTTGCTTGTGCTTGCTGTTGGTAAA
                      ____________________________________________________________
consensus             TAGCCAACTCATCTTCATATCTCAGCATTTGTGCCTTTGCTTGTGCTTGCTGTTGGTAAA
 
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JMSF025G21+           GCTCCCGCTGATTTTCTCCCCATTTTTGCTGCTTCTCAATATCAGCGTGAGCTTGGATAG
                      ____________________________________________________________
consensus             GCTCCCGCTGATTTTCTCCCCATTTTTGCTGCTTCTCAATATCAGCGTGAGCTTGGATAG
 
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JMSF025G21+           CCTCAAAATGAGCTTTCTCCGCATCCAATTCAGCGAGACGCGATTTTTCCTGCTTTCTCA
JMSF003F14+                                          AGCGAGACGCGATTTTTCCTGCTTTCTCA
                      ____________________________________________________________
consensus             CCTCAAAATGAGCTTTCTCCGCATCCAATTCAGCGAGACGCGATTTTTCCTGCTTTCTCA
 
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JMSF025G21+           TTACTTCAAACACCTGTTTGTGATACGGAGAGCTGTTGATTTCCTTGAGGGCTTTCGCGC
JMSF003F14+           TTACTTCAAACACCTGTTTGTGATACGGAGAGCTGTTGATTTCCTTGAGGGCTTTCGCGC
                      ____________________________________________________________
consensus             TTACTTCAAACACCTGTTTGTGATACGGAGAGCTGTTGATTTCCTTGAGGGCTTTCGCGC
 
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JMSF025G21+           CCCTTTCTAGAGCTTGGTGATCGAAGCCGCCTCTAGAATCCTCTGCGGGAGCTTTGGAAT
JMSF017O20+                                                           GAGCTTTGGAAT
JMSF003F14+           CCCTTTCTAGAGCTTGGTGATCGAAGCCGCCTCTAGAATCCTCTGCGGGAGCTTTGGAAT
                      ____________________________________________________________
consensus             CCCTTTCTAGAGCTTGGTGATCGAAGCCGCCTCTAGAATCCTCTGCGGGAGCTTTGGAAT
 
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JMSF025G21+           CCGAAGCAGGAGAATCGGCGGCCGGAGAAGGTGGAGGAGGAGGAGAGGGTGAGGAAGAGA
JMSF017O20+           CCGAAGCAGGAGAATCGGCGGCCGGAGAAGGTGGAGGAGGAGGAGAGGGTGAGGAAGAGA
JMSF003F14+           CCGAAGCAGGAGAATCGGCGGCCGGAGAAGGTGGAGGAGGAGGAGAGGGTGAGGAAGAGA
                      ____________________________________________________________
consensus             CCGAAGCAGGAGAATCGGCGGCCGGAGAAGGTGGAGGAGGAGGAGAGGGTGAGGAAGAGA
 
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JMSF025G21+           AAGGGTAGAAGCGAAACGGAAAATCAGCGTACGCGCGGTTCGACAGATTGGAGCTTGAAC
JMSF017O20+           AAGGGTAGAAGCGAAACGGAAAATCAGCGTACGCGCGGTTCGACAGATTGGAGCTTGAAC
JMSF003F14+           AAGGGTAGAAGCGAAACGGAAAATCAGCGTACGCGCGGTTCGACAGATTGGAGCTTGAAC
                      ____________________________________________________________
consensus             AAGGGTAGAAGCGAAACGGAAAATCAGCGTACGCGCGGTTCGACAGATTGGAGCTTGAAC
 
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JMSF025G21+           TGGCGACCGCCGCGGCAGCGGCGACGGCCGCCATAGAAGATAGCCTTGAAGCTGCCATTT
JMSF017O20+           TGGCGACCGCCGCGGCAGCGGCGACGGCCGCCATAGAAGATAGCCTTGAAGCTGCCATTT
JMSF003F14+           TGGCGACCGCCGCGGCAGCGGCGACGGCCGCCATAGAAGATAGCCTTGAAGCTGCCATTT
                      ____________________________________________________________
consensus             TGGCGACCGCCGCGGCAGCGGCGACGGCCGCCATAGAAGATAGCCTTGAAGCTGCCATTT
 
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JMSF025G21+           CTCATCAATCAAAATCC                                           
JMSF017O20+           CTCATCAATCAAAATCCTCGCTGGCAGTTAGTCCTGGAGGAGCTTCCCTT          
JMSF003F14+           CTCATCAATCAAAATCCTCGCTGGCAGTTAGTCCTGGAGGAGCTTCCCTTAAACCCCTCC
                      ____________________________________________________________
consensus             CTCATCAATCAAAATCCTCGCTGGCAGTTAGTCCTGGAGGAGCTTCCCTTAAACCCCTCC