| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002I06 | Sequence | 334 | 013206 (6) | 695 | 013206 (6) | ref|XP_007013484.1| | 1e-61 | Thylakoid lumenal 16.5 kDa protein [Theobroma cacao] gb|EOY31103.1| Thylakoid lu | |||
| JMSF026G13 | Sequence | 571 | 013206 (6) | ref|XP_009758338.1| | 5e-38 | PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Nicotiana sylvest | 727 | 013206 (6) | ref|XP_007013484.1| | 2e-61 | Thylakoid lumenal 16.5 kDa protein [Theobroma cacao] gb|EOY31103.1| Thylakoid lu |
| JMSF042E18 | Sequence | 728 | 013206 (6) | ref|XP_007013484.1| | 5e-63 | Thylakoid lumenal 16.5 kDa protein [Theobroma cacao] gb|EOY31103.1| Thylakoid lu | 692 | 013206 (6) | ref|XP_007013484.1| | 1e-61 | Thylakoid lumenal 16.5 kDa protein [Theobroma cacao] gb|EOY31103.1| Thylakoid lu |
This contig is upended
. : . : . : . : . : . :
rJMSF026G13- GTGATGGATATTTACTTGAAATACAATGAATATTCAGTTCAAAACAAACGAAT
____________________________________________________________
consensus GTGATGGATATTTACTTGAAATACAATGAATATTCAGTTCAAAACAAACGAAT
. : . : . : . : . : . :
rJMSF026G13- ATTTACTCCATATCCTTGATAAACAATGAGGTACACAATATACTGATAAACTCAGCTGTA
rJMSF042E18- GAGGTACACAATATACTGATAAACTCAGCTGTA
rJMSF002I06- GAGGTACACAATATACTGATAAACTCAGCTGTA
____________________________________________________________
consensus ATTTACTCCATATCCTTGATAAACAATGAGGTACACAATATACTGATAAACTCAGCTGTA
. : . : . : . : . : . :
rJMSF026G13- GTAAACAAGAATCTGATCATTGAACATTGTTGTCTGCAGACTAATTCTATGCATAGCTCA
rJMSF042E18- GTAAACAAGAATCTGATCATTGAACATTGTTGTCTGCAGACTAATTCTATGCATAGCTCA
rJMSF002I06- GTAAACAAGAATCTGATCATTGAACATTGTTGTCTGCAGACTAATTCTATGCATAGCTCA
____________________________________________________________
consensus GTAAACAAGAATCTGATCATTGAACATTGTTGTCTGCAGACTAATTCTATGCATAGCTCA
. : . : . : . : . : . :
rJMSF026G13- ATGTAGTAAATCCGAGTGGAAAATTGGAGTCAGCCATGGCCTTCGGCGCATTAGATATAC
rJMSF042E18- ATGTAGTAAATCCGAGTGGAAAATTGGAGTCAGCCATGGCCTTCGGCGCATTAGATATAC
rJMSF002I06- ATGTAGTAAATCCGAGTGGAAAATTGGAGTCAGCCATGGCCTTCGGCGCATTAGATATAC
____________________________________________________________
consensus ATGTAGTAAATCCGAGTGGAAAATTGGAGTCAGCCATGGCCTTCGGCGCATTAGATATAC
. : . : . : . : . : . :
rJMSF026G13- TAAATGAGCATTCCTTTTTCCCTTCAGAGTCCTTTAAGCTCTCCAACCAGACCTGTTAAG
rJMSF042E18- TAAATGAGCATTCCTTTTTCCCTTCAGAGTCCTTTAAGCTCTCCAACCAGACCTGTTAAG
rJMSF002I06- TAAATGAGCATTCCTTTTTCCCTTCAGAGTCCTTTAAGCTCTCCAACCAGACCTGTTAAG
JMSF042E18+ TCCAACCAGACCTGTTAAG
____________________________________________________________
consensus TAAATGAGCATTCCTTTTTCCCTTCAGAGTCCTTTAAGCTCTCCAACCAGACCTGTTAAG
. : . : . : . : . : . :
rJMSF026G13- GTTGTCCACTTCTCAAATGCAGTTGCTGATGCTACAAACGATGTTCTTGATGCTTCAACG
rJMSF042E18- GTTGTCCACTTCTCAAATGCAGTTGCTGATGCTACAAACGATGTTCTTGATGCTTCAACG
rJMSF002I06- GTTGTCCACTTCTCAAATGCAGTTGCTGATGCTACAAACGATGTTCTTGATGCTTCAACG
JMSF042E18+ GTTGTCCACTTCTCAAATGCAGTTGCTGATGCTACAAACGATGTTCTTGATGCTTCAACG
____________________________________________________________
consensus GTTGTCCACTTCTCAAATGCAGTTGCTGATGCTACAAACGATGTTCTTGATGCTTCAACG
. : . : . : . : . : . :
rJMSF026G13- TCGTTCTTTATGACCGATGAAATTAGAGAAGCCAACGATGAGTTGAAAGCATCTACCTCA
rJMSF042E18- TCGTTCTTTATGACCGATGAAATTAGAGAAGCCAACGATGAGTTGAAAGCATCTACCTCA
rJMSF002I06- TCGTTCTTTATGACCGATGAAATTAGAGAAGCCAACGATGAGTTGAAAGCATCTACCTCA
JMSF042E18+ TCGTTCTTTATGACCGATGAAATTAGAGAAGCCAACGATGAGTTGAAAGCATCTACCTCA
____________________________________________________________
consensus TCGTTCTTTATGACCGATGAAATTAGAGAAGCCAACGATGAGTTGAAAGCATCTACCTCA
. : . : . : . : . : . :
rJMSF026G13- CTCTTCTCCTCAGGGCTGATGCTGAACTTGGTTAAGGCTGAATTAACATTTTTAACCCAA
rJMSF042E18- CTCTTCTCCTCAGGGCTGATGCTGAACTTGGTTAAGGCTGAATTAACATTTTTAACCCAA
rJMSF002I06- CTCTTCTCCTCAGGGCTGATGCTGAACTTGGTTAAGGCTGAATTAACATTTTTAACCCAA
JMSF026G13+ CTCAGGGCTGATGCTGAACTTGGTTAAGGCTGAATTAACATTTTTAACCCAA
JMSF042E18+ CTCTTCTCCTCAGGGCTGATGCTGAACTTGGTTAAGGCTGAATTAACATTTTTAACCCAA
____________________________________________________________
consensus CTCTTCTCCTCAGGGCTGATGCTGAACTTGGTTAAGGCTGAATTAACATTTTTAACCCAA
. : . : . : . : . : . :
rJMSF026G13- TCTGTCTCGACATTTTGACCGAGAACACCACTTGCAGCTGGGAGATCATTTTTCTCAATG
rJMSF042E18- TCTGTCTCGACATTTTGACCGAGAACACCACTTGCAGCTGGGAGATCATTTTTCTCAATG
rJMSF002I06- TCTGTCTCGACATTTTGACCGAGAACACCACTTGCAGCTGGGAGATCATTTTTCTCAATG
JMSF026G13+ TCTGTCTCGACATTTTGACCGAGAACACCACTTGCAGCTGGGAGATCATTTTTCTCAATG
JMSF042E18+ TCTGTCTCGACATTTTGACCGAGAACACCACTTGCAGCTGGGAGATCATTTTTCTCAATG
____________________________________________________________
consensus TCTGTCTCGACATTTTGACCGAGAACACCACTTGCAGCTGGGAGATCATTTTTCTCAATG
. : . : . : . : . : . :
rJMSF026G13- GCTTGGCCAACTTTGCTCAGCTTGTAGACAAGATCTTGCAGGTATCCTCTCTCTTTACCA
rJMSF042E18- GCTTGGCCAACTTTGCTCAGCTTGTAGACAAGATCTTGCAGGTATCCTCTCTCTTTACCA
rJMSF002I06- GCTTGGCCAACTTTGCTCAGCTTGTAGACAAGATCTTGCAGGTATCCTCTCTCTTTACCA
JMSF026G13+ GCTTGGCCAACTTTGCTCAGCTTGTAGACAAGATCTTGCAGGTATCCTCTCTCTTTACCA
JMSF042E18+ GCTTGGCCAACTTTGCTCAGCTTGTAGACAAGATCTTGCAGGTATCCTCTCTCTTTACCA
____________________________________________________________
consensus GCTTGGCCAACTTTGCTCAGCTTGTAGACAAGATCTTGCAGGTATCCTCTCTCTTTACCA
. : . : . : . : . : . :
rJMSF026G13- GAGGAATTGATAAGCCCTTGTCTCTCAAGCCTCTTCTTCCTGTCCTGCTTCACCTTCTGC
rJMSF042E18- GAGGAATTGATAAGCCCTTGTCTCTCAAGCCTCTTCTTCCTGTCCTGCTTCACCTTCTGC
rJMSF002I06- GAGGAATTGATAAGCCCTTGTCTCTCAAGCCTCTTCTTCCTGTCCTGCTTCACCTTCTGC
JMSF026G13+ GAGGAATTGATAAGCCCTTGTCTCTCAAGCCTCTTCTTCCTGTCCTGCTTCACCTTCTGC
JMSF042E18+ GAGGAATTGATAAGCCCTTGTCTCTCAAGCCTCTTCTTCCTGTCCTGCTTCACCTTCTGC
____________________________________________________________
consensus GAGGAATTGATAAGCCCTTGTCTCTCAAGCCTCTTCTTCCTGTCCTGCTTCACCTTCTGC
. : . : . : . : . : . :
rJMSF026G13- AACAAGTCCTCATCATCATCAGCCTCAAGAATTGCAGCATTGGCATCAAAGCAGCCATGG
rJMSF042E18- AACAAGTCCTCATCATCATCAGCCTCAAGAATTGCAGCATTGGCATCAAAGCAGCCATGG
rJMSF002I06- AACAAGTCCTCATCATCATCAGCCTCAAGAATTGCAGCATTGGCATCAAAGCAGCCATGG
JMSF026G13+ AACAAGTCCTCATCATCATCAGCCTCAAGAATTGCAGCATTGGCATCAAAGCAGCCATGG
JMSF042E18+ AACAAGTCCTCATCATCATCAGCCTCAAGAATTGCAGCATTGGCATCAAAGCAGCCATGG
JMSF002I06+ AAGAATTGCAGCATNGGCATCAAAGCAGCCATGG
____________________________________________________________
consensus AACAAGTCCTCATCATCATCAGCCTCAAGAATTGCAGCATTGGCATCAAAGCAGCCATGG
. : . : . : . : . : . :
rJMSF026G13- CTGCCACTCAAGGA
rJMSF042E18- CTGCCACTCAAGGAGAGCAGCAAAGTGGTGGTGAGGCTAAGGTACAGGCTTCTCTTGGA
rJMSF002I06- CTGCCACTCAAGGAGAGCAGCAAAGTGGTGGTGAGGCTAAGGTACAGGCTTCTCTTGGAG
JMSF026G13+ CTGCCACTCAAGGAGAGCAGCAAAGTGGTGGTGAGGCTAAGGTACAGGCTTCTCTTGGAG
JMSF042E18+ CTGCCACTCAAGGAGAGCAGCAAAGTGGTGGTGAGGCTAAGGTACAGGCTTCTCTTGGAG
JMSF002I06+ CTGCCACTCAAGGAGAGCAGCAAAGTGGTGGTGAGGCTAAGGTACAGGCTTCTCTNGGAG
____________________________________________________________
consensus CTGCCACTCAAGGAGAGCAGCAAAGTGGTGGTGAGGCTAAGGTACAGGCTTCTCTTGGAG
. : . : . : . : . : . :
JMSF026G13+ ATGAGAATTGGAGGGGGAAAATGCGATTCATTCACAGCTTTGCACCATATGAGCTGTCTC
JMSF042E18+ ATGAGAATTGGAGGGGGAAAATGCGATTCATTCACAGCTTTGCACCATATGAGCTGTCTC
JMSF002I06+ ATGAGAATTGGAGGGGGAAAATGCGATTCATTCACAGCTTTGCACCATATGAGCTGTCTC
____________________________________________________________
consensus ATGAGAATTGGAGGGGGAAAATGCGATTCATTCACAGCTTTGCACCATATGAGCTGTCTC
. : . : . : . : . : . :
JMSF026G13+ CTTGAATTGGGCTTCTGGGTATGAATTGATAATGGTGAAGATGATGAAGGGGAAGATGGG
JMSF042E18+ CTTGAATTGGGCTTCTGGGTATGAATTGATAATGGTGAAGATGATGAAGGGGAAGATGGG
JMSF002I06+ CTTGAATTGGGCTTCTGGGTATGAATTGATAATGGTGAAGATGATGAAGGGGAAGATGGG
____________________________________________________________
consensus CTTGAATTGGGCTTCTGGGTATGAATTGATAATGGTGAAGATGATGAAGGGGAAGATGGG
. : . : . : . : . : . :
JMSF026G13+ AAAGAGGATTGGAGTGAAGGGAGGAAGGATTTTGCATTTGAGAGACAGAAAGTTGCCATC
JMSF042E18+ AAAGAGGATTGGAGTGAAGGGAGGAAGGATTTTGCATTTGAGAGACAGAAAGTTGCCATC
JMSF002I06+ AAAGAGGATTGGAGTGAAGGGAGGAAGGATTTTGCATTTGAGAGACAGAAAGTTGCCATC
____________________________________________________________
consensus AAAGAGGATTGGAGTGAAGGGAGGAAGGATTTTGCATTTGAGAGACAGAAAGTTGCCATC
. : . : . : . : . : . :
JMSF026G13+ TTTTTTTGATTTTTTGAAGTTTTTTTGGTTGATCTTTT
JMSF042E18+ TTTTTTTGATTTTTTGAAGTTTTTTTGGTTGATCTTTTGTCTTGCC
JMSF002I06+ TTTTTTTGATTTTTTGAAGTTTTTTTGGTTGATCTTTTGTCTTGCCTTAGTTTATTTGTC
____________________________________________________________
consensus TTTTTTTGATTTTTTGAAGTTTTTTTGGTTGATCTTTTGTCTTGCCTTAGTTTATTTGTC