Contig 013204:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002C02Sequence312013204 (2)734004211 (2)emb|CDP12051.1|2e-89unnamed protein product [Coffea canephora]
JMSF011M14Sequence348013204 (2)ref|XP_006387688.1|8e-24DNA repair protein and transcription factor, partial [Populus trichocarpa] gb|E755004211 (2)emb|CDP12051.1|7e-101unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF011M14+ ATC
                      ____________________________________________________________
consensus ATC
 
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JMSF011M14+ CGCACAGGCCCATAATGGGCGATTTGCATGATCAGGTTTGAGTTCAAGTTTTGTAAAATC
                      ____________________________________________________________
consensus CGCACAGGCCCATAATGGGCGATTTGCATGATCAGGTTTGAGTTCAAGTTTTGTAAAATC
 
. : . : . : . : . : . :
JMSF011M14+ CCTTTTCTTCCCTTCATCCTGAGAGTCATCATTGATTTCATCGACGTAATATGGTTCATC
                      ____________________________________________________________
consensus CCTTTTCTTCCCTTCATCCTGAGAGTCATCATTGATTTCATCGACGTAATATGGTTCATC
 
. : . : . : . : . : . :
JMSF011M14+ TTCTTCGACAGACCTGTGTTCCTCCTTTGAGGAAAACTTTATCTTTTTGCTTGGCCGGCC
                      ____________________________________________________________
consensus TTCTTCGACAGACCTGTGTTCCTCCTTTGAGGAAAACTTTATCTTTTTGCTTGGCCGGCC
 
. : . : . : . : . : . :
JMSF011M14+ TTNATCGCCGTGGCCCATCTTCCTCTATGGTTGAGCTCTGACAGTGGATATAGATTTATG
JMSF002C02+ CTGACAGTGGATATAGATTTATG
                      ____________________________________________________________
consensus TTNATCGCCGTGGCCCATCTTCCTCTATGGTTGAGCTCTGACAGTGGATATAGATTTATG
 
. : . : . : . : . : . :
JMSF011M14+ CGACTGAAATCACCGGCTTTAATGGAGATATTGAGCAAAATGTCCAACTACGGGTGGACA
JMSF002C02+ CGACTGAAATCACCGGCTTTAATGGAGATATTGAGCAAAATGTCCAACTACGGGTGGACA
                      ____________________________________________________________
consensus CGACTGAAATCACCGGCTTTAATGGAGATATTGAGCAAAATGTCCAACTACGGGTGGACA
 
. : . : . : . : . : . :
JMSF011M14+ AGAGGTCTCTCTGGTGAACGACGATGATCTATTGAGTATGCATCC
JMSF002C02+ AGAGGTCTCTCTGGTGAACGACGATGATCTATTGAGTATGCATCCAAACGCGCCCCAGTC
                      ____________________________________________________________
consensus AGAGGTCTCTCTGGTGAACGACGATGATCTATTGAGTATGCATCCAAACGCGCCCCAGTC