Contig 013202:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P21Sequence230013202 (2)586001269 (2)ref|XP_006338094.1|6e-33PREDICTED: ZF-HD homeobox protein At4g24660-like [Solanum tuberosum]
JMSF002P17Sequence245013202 (2)573001269 (2)ref|XP_010266504.1|1e-25PREDICTED: zinc-finger homeodomain protein 1-like [Nelumbo nucifera]

Alignment

This contig is upended


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JMSF002P17+                                                                 TCATGC
                      ____________________________________________________________
consensus                                                                   TCATGC
 
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JMSF002P17+           ATCCCAATTTCCTCTTCTTGCTCCTCATCAAAATCCATCTCTCACATATAAATCTTGAAA
JMSF001P21+                    TCCTCTTCTTGCTCCTCATCAAAATCCATCTCTCACATATAAATCTTGAAA
                      ____________________________________________________________
consensus             ATCCCAATTTCCTCTTCTTGCTCCTCATCAAAATCCATCTCTCACATATAAATCTTGAAA
 
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JMSF002P17+           AATACAGTCTTCAAATTAAATTATACAAATTACCCCTTCAAGACAAACAGATCCACTCTG
JMSF001P21+           AATACAGTCTTCAAATTAAATT-TACAAATTACCCCTTCAAGACAAACAGATCCACTCTG
                      ____________________________________________________________
consensus             AATACAGTCTTCAAATTAAATTATACAAATTACCCCTTCAAGACAAACAGATCCACTCTG
 
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JMSF002P17+           AAAATATATATATATAAGTTTAATTTACAGCTAAGGAAGAAGTAAGGGAGGTGGAAATGG
JMSF001P21+           AAAATATATATATATAAGTTTAATTTACAGCTAAGGAAGAAGTAAGGGAGGTGGAAATGG
                      ____________________________________________________________
consensus             AAAATATATATATATAAGTTTAATTTACAGCTAAGGAAGAAGTAAGGGAGGTGGAAATGG
 
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JMSF002P17+           CCTGAGGTTAAAGAAGATGATCGGAGGAGAAGATAAGAAGAAGGGGAAGGGTGTGGACC 
JMSF001P21+           CCTGAGGTTAAAGAAGATGATCGGAGGAGAAGATAAGAAGAAGGGGAAGGGTGTGGACCC
                      ____________________________________________________________
consensus             CCTGAGGTTAAAGAAGATGATCGGAGGAGAAGATAAGAAGAAGGGGAAGGGTGTGGACCC