Contig 013202:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P21Sequence230013202 (2)586001269 (2)ref|XP_006338094.1|6e-33PREDICTED: ZF-HD homeobox protein At4g24660-like [Solanum tuberosum]
JMSF002P17Sequence245013202 (2)573001269 (2)ref|XP_010266504.1|1e-25PREDICTED: zinc-finger homeodomain protein 1-like [Nelumbo nucifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF002P17+ TCATGC
                      ____________________________________________________________
consensus TCATGC
 
. : . : . : . : . : . :
JMSF002P17+ ATCCCAATTTCCTCTTCTTGCTCCTCATCAAAATCCATCTCTCACATATAAATCTTGAAA
JMSF001P21+ TCCTCTTCTTGCTCCTCATCAAAATCCATCTCTCACATATAAATCTTGAAA
                      ____________________________________________________________
consensus ATCCCAATTTCCTCTTCTTGCTCCTCATCAAAATCCATCTCTCACATATAAATCTTGAAA
 
. : . : . : . : . : . :
JMSF002P17+ AATACAGTCTTCAAATTAAATTATACAAATTACCCCTTCAAGACAAACAGATCCACTCTG
JMSF001P21+ AATACAGTCTTCAAATTAAATT-TACAAATTACCCCTTCAAGACAAACAGATCCACTCTG
                      ____________________________________________________________
consensus AATACAGTCTTCAAATTAAATTATACAAATTACCCCTTCAAGACAAACAGATCCACTCTG
 
. : . : . : . : . : . :
JMSF002P17+ AAAATATATATATATAAGTTTAATTTACAGCTAAGGAAGAAGTAAGGGAGGTGGAAATGG
JMSF001P21+ AAAATATATATATATAAGTTTAATTTACAGCTAAGGAAGAAGTAAGGGAGGTGGAAATGG
                      ____________________________________________________________
consensus AAAATATATATATATAAGTTTAATTTACAGCTAAGGAAGAAGTAAGGGAGGTGGAAATGG
 
. : . : . : . : . : . :
JMSF002P17+ CCTGAGGTTAAAGAAGATGATCGGAGGAGAAGATAAGAAGAAGGGGAAGGGTGTGGACC
JMSF001P21+ CCTGAGGTTAAAGAAGATGATCGGAGGAGAAGATAAGAAGAAGGGGAAGGGTGTGGACCC
                      ____________________________________________________________
consensus CCTGAGGTTAAAGAAGATGATCGGAGGAGAAGATAAGAAGAAGGGGAAGGGTGTGGACCC