clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF001N18 | Sequence | 267 | 013201 (3) | ref|XP_010693188.1| | 1e-07 | PREDICTED: uncharacterized protein LOC104906171 isoform X1 [Beta vulgaris subsp | 751 | 004379 (3) | ref|XP_006338380.1| | 5e-32 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] |
JMSF018K08 | Sequence | 578 | 013201 (3) | ref|XP_006338380.1| | 8e-58 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] | 771 | 004379 (3) | ref|XP_006338380.1| | 1e-31 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] |
JMSF044M03 | Sequence | 763 | 013201 (3) | ref|XP_006338380.1| | 9e-95 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] | 679 | 004379 (3) | ref|XP_006338380.1| | 4e-25 | PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF044M03+ CCCAAATCG
____________________________________________________________
consensus CCCAAATCG
. : . : . : . : . : . :
JMSF044M03+ CTCAAAGAGTTCCCTCAAGTAATTTTCATCAGCTTCAGATGGAAGATTTCTAACAAAGGC
____________________________________________________________
consensus CTCAAAGAGTTCCCTCAAGTAATTTTCATCAGCTTCAGATGGAAGATTTCTAACAAAGGC
. : . : . : . : . : . :
JMSF044M03+ TATTTTGATCTTAGCAAGTTCTTTTTGATCAATTTCTTGTTCCTCCTCAGCCCATTGAAT
____________________________________________________________
consensus TATTTTGATCTTAGCAAGTTCTTTTTGATCAATTTCTTGTTCCTCCTCAGCCCATTGAAT
. : . : . : . : . : . :
JMSF044M03+ AGCTGGATGCAAATTACCAAGAAGGAATTCTGAACTGGTTCCCAACCGATATGCACGAGA
____________________________________________________________
consensus AGCTGGATGCAAATTACCAAGAAGGAATTCTGAACTGGTTCCCAACCGATATGCACGAGA
. : . : . : . : . : . :
JMSF044M03+ TGCAGCAGCATGAGATGAGAATTTAACAAAAGCAAAGCCCCGATTCCGTTGCTTTTGACC
____________________________________________________________
consensus TGCAGCAGCATGAGATGAGAATTTAACAAAAGCAAAGCCCCGATTCCGTTGCTTTTGACC
. : . : . : . : . : . :
JMSF044M03+ AGCTTGCAGATCTCCATGCATTACAAGATTAACAGATACAACACCTGGAAAAACCTGGTG
____________________________________________________________
consensus AGCTTGCAGATCTCCATGCATTACAAGATTAACAGATACAACACCTGGAAAAACCTGGTG
. : . : . : . : . : . :
JMSF044M03+ TATAAGGTTTTCAAATTCCTCAGCACTCCAACCTTTGTTAAGATTCCCAAAAAATAATGT
____________________________________________________________
consensus TATAAGGTTTTCAAATTCCTCAGCACTCCAACCTTTGTTAAGATTCCCAAAAAATAATGT
. : . : . : . : . : . :
JMSF044M03+ ATCCTGCTCTATTGAAGGGAGAACACCAATCTTCCGTCCATCTATAACATATCCAGACTT
JMSF018K08+ AACATATCCAGACTT
____________________________________________________________
consensus ATCCTGCTCTATTGAAGGGAGAACACCAATCTTCCGTCCATCTATAACATATCCAGACTT
. : . : . : . : . : . :
JMSF044M03+ TTCCTTTACAGCTTTTTCTGCAGCCTCTTTTGTTGCAAAACGTACAAACCCAAAACCCTT
JMSF018K08+ TTCCTTTACAGCTTTTTCTGCAGCCTCTTTTGTTGCAAAACGTACAAACCCAAAACCCTT
____________________________________________________________
consensus TTCCTTTACAGCTTTTTCTGCAGCCTCTTTTGTTGCAAAACGTACAAACCCAAAACCCTT
. : . : . : . : . : . :
JMSF044M03+ TAGGTTGCCACTCTGGTCCTGTATCAGCCTTATTTCAACAATTTTGCCACAAGTAGAGAA
JMSF018K08+ TAGGTTGCCACTCTGGTCCTGTATCAGCCTTATTTCAACAATTTTGCCACAAGTAGAGAA
JMSF001N18+ TTCAACAATTTTGCCACAAGTAGAGAA
____________________________________________________________
consensus TAGGTTGCCACTCTGGTCCTGTATCAGCCTTATTTCAACAATTTTGCCACAAGTAGAGAA
. : . : . : . : . : . :
JMSF044M03+ TACCTCTCTGATCTTGTCTTCAGTAACAGTACGGGCCAAACCACCAATAAAAACTTCTGA
JMSF018K08+ TACCTCTCTGATCTTGTCTTCAGTAACAGTACGGGCCAAACCACCAATAAAAACTTCTGA
JMSF001N18+ TACCTCTCTGATCTTGTCTTCAGTAACAGTACGGGCCAAACCACCAATAAAAACTTCTGA
____________________________________________________________
consensus TACCTCTCTGATCTTGTCTTCAGTAACAGTACGGGCCAAACCACCAATAAAAACTTCTGA
. : . : . : . : . : . :
JMSF044M03+ ACCTTTATTAAAAGGATTCTGGTGTTCGGCTTGAAGATGCTCAGTCGAATGGCTCATCAG
JMSF018K08+ ACCTTTATTAAAAGGATTCTGGTGTTCGGCTTGAAGATGCTCAGTCGAATGGCTCATCAG
JMSF001N18+ ACCTTTATTAAAAGGATTCTGGTGTTCGGCTTGAAGATGCTCAGTCGAATGGCTCATCAG
____________________________________________________________
consensus ACCTTTATTAAAAGGATTCTGGTGTTCGGCTTGAAGATGCTCAGTCGAATGGCTCATCAG
. : . : . : . : . : . :
JMSF044M03+ TGCAGGTGATGAATTGGAGCTTCAGTTGCAGTTGGTCAGTGCGCGGTAATTGGAACTGGA
JMSF018K08+ TGCAGGTGATGAATTGGAGCTTCAGTTGCAGTTGGTCAGTGCGCGGTAATTGGAACTGGA
JMSF001N18+ TGCAGGTGATGAATTGGAGCTTCAGTTGCAGTTGGTCAGTGCGCGGTAATTGGAACTGGA
____________________________________________________________
consensus TGCAGGTGATGAATTGGAGCTTCAGTTGCAGTTGGTCAGTGCGCGGTAATTGGAACTGGA
. : . : . : . : . : . :
JMSF044M03+ ACCCTAAAATTCCAGCGAATTGTCACTGCTC
JMSF018K08+ ACCCTAAAATTCCAGCGAATTGTCACTGCTC
JMSF001N18+ ACCCTAAAATTCCAGCGAATTGTCACTGCTCGAAGAACGGTGGCCGCAACTTTTCCCCTC
____________________________________________________________
consensus ACCCTAAAATTCCAGCGAATTGTCACTGCTCGAAGAACGGTGGCCGCAACTTTTCCCCTC