Contig 013201:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001N18Sequence267013201 (3)ref|XP_010693188.1|1e-07PREDICTED: uncharacterized protein LOC104906171 isoform X1 [Beta vulgaris subsp751004379 (3)ref|XP_006338380.1|5e-32PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum]
JMSF018K08Sequence578013201 (3)ref|XP_006338380.1|8e-58PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] 771004379 (3)ref|XP_006338380.1|1e-31PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum]
JMSF044M03Sequence763013201 (3)ref|XP_006338380.1|9e-95PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum] 679004379 (3)ref|XP_006338380.1|4e-25PREDICTED: uncharacterized protein LOC102589697 isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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JMSF044M03+                                                              CCCAAATCG
                      ____________________________________________________________
consensus                                                                CCCAAATCG
 
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JMSF044M03+           CTCAAAGAGTTCCCTCAAGTAATTTTCATCAGCTTCAGATGGAAGATTTCTAACAAAGGC
                      ____________________________________________________________
consensus             CTCAAAGAGTTCCCTCAAGTAATTTTCATCAGCTTCAGATGGAAGATTTCTAACAAAGGC
 
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JMSF044M03+           TATTTTGATCTTAGCAAGTTCTTTTTGATCAATTTCTTGTTCCTCCTCAGCCCATTGAAT
                      ____________________________________________________________
consensus             TATTTTGATCTTAGCAAGTTCTTTTTGATCAATTTCTTGTTCCTCCTCAGCCCATTGAAT
 
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JMSF044M03+           AGCTGGATGCAAATTACCAAGAAGGAATTCTGAACTGGTTCCCAACCGATATGCACGAGA
                      ____________________________________________________________
consensus             AGCTGGATGCAAATTACCAAGAAGGAATTCTGAACTGGTTCCCAACCGATATGCACGAGA
 
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JMSF044M03+           TGCAGCAGCATGAGATGAGAATTTAACAAAAGCAAAGCCCCGATTCCGTTGCTTTTGACC
                      ____________________________________________________________
consensus             TGCAGCAGCATGAGATGAGAATTTAACAAAAGCAAAGCCCCGATTCCGTTGCTTTTGACC
 
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JMSF044M03+           AGCTTGCAGATCTCCATGCATTACAAGATTAACAGATACAACACCTGGAAAAACCTGGTG
                      ____________________________________________________________
consensus             AGCTTGCAGATCTCCATGCATTACAAGATTAACAGATACAACACCTGGAAAAACCTGGTG
 
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JMSF044M03+           TATAAGGTTTTCAAATTCCTCAGCACTCCAACCTTTGTTAAGATTCCCAAAAAATAATGT
                      ____________________________________________________________
consensus             TATAAGGTTTTCAAATTCCTCAGCACTCCAACCTTTGTTAAGATTCCCAAAAAATAATGT
 
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JMSF044M03+           ATCCTGCTCTATTGAAGGGAGAACACCAATCTTCCGTCCATCTATAACATATCCAGACTT
JMSF018K08+                                                        AACATATCCAGACTT
                      ____________________________________________________________
consensus             ATCCTGCTCTATTGAAGGGAGAACACCAATCTTCCGTCCATCTATAACATATCCAGACTT
 
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JMSF044M03+           TTCCTTTACAGCTTTTTCTGCAGCCTCTTTTGTTGCAAAACGTACAAACCCAAAACCCTT
JMSF018K08+           TTCCTTTACAGCTTTTTCTGCAGCCTCTTTTGTTGCAAAACGTACAAACCCAAAACCCTT
                      ____________________________________________________________
consensus             TTCCTTTACAGCTTTTTCTGCAGCCTCTTTTGTTGCAAAACGTACAAACCCAAAACCCTT
 
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JMSF044M03+           TAGGTTGCCACTCTGGTCCTGTATCAGCCTTATTTCAACAATTTTGCCACAAGTAGAGAA
JMSF018K08+           TAGGTTGCCACTCTGGTCCTGTATCAGCCTTATTTCAACAATTTTGCCACAAGTAGAGAA
JMSF001N18+                                            TTCAACAATTTTGCCACAAGTAGAGAA
                      ____________________________________________________________
consensus             TAGGTTGCCACTCTGGTCCTGTATCAGCCTTATTTCAACAATTTTGCCACAAGTAGAGAA
 
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JMSF044M03+           TACCTCTCTGATCTTGTCTTCAGTAACAGTACGGGCCAAACCACCAATAAAAACTTCTGA
JMSF018K08+           TACCTCTCTGATCTTGTCTTCAGTAACAGTACGGGCCAAACCACCAATAAAAACTTCTGA
JMSF001N18+           TACCTCTCTGATCTTGTCTTCAGTAACAGTACGGGCCAAACCACCAATAAAAACTTCTGA
                      ____________________________________________________________
consensus             TACCTCTCTGATCTTGTCTTCAGTAACAGTACGGGCCAAACCACCAATAAAAACTTCTGA
 
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JMSF044M03+           ACCTTTATTAAAAGGATTCTGGTGTTCGGCTTGAAGATGCTCAGTCGAATGGCTCATCAG
JMSF018K08+           ACCTTTATTAAAAGGATTCTGGTGTTCGGCTTGAAGATGCTCAGTCGAATGGCTCATCAG
JMSF001N18+           ACCTTTATTAAAAGGATTCTGGTGTTCGGCTTGAAGATGCTCAGTCGAATGGCTCATCAG
                      ____________________________________________________________
consensus             ACCTTTATTAAAAGGATTCTGGTGTTCGGCTTGAAGATGCTCAGTCGAATGGCTCATCAG
 
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JMSF044M03+           TGCAGGTGATGAATTGGAGCTTCAGTTGCAGTTGGTCAGTGCGCGGTAATTGGAACTGGA
JMSF018K08+           TGCAGGTGATGAATTGGAGCTTCAGTTGCAGTTGGTCAGTGCGCGGTAATTGGAACTGGA
JMSF001N18+           TGCAGGTGATGAATTGGAGCTTCAGTTGCAGTTGGTCAGTGCGCGGTAATTGGAACTGGA
                      ____________________________________________________________
consensus             TGCAGGTGATGAATTGGAGCTTCAGTTGCAGTTGGTCAGTGCGCGGTAATTGGAACTGGA
 
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JMSF044M03+           ACCCTAAAATTCCAGCGAATTGTCACTGCTC                             
JMSF018K08+           ACCCTAAAATTCCAGCGAATTGTCACTGCTC                             
JMSF001N18+           ACCCTAAAATTCCAGCGAATTGTCACTGCTCGAAGAACGGTGGCCGCAACTTTTCCCCTC
                      ____________________________________________________________
consensus             ACCCTAAAATTCCAGCGAATTGTCACTGCTCGAAGAACGGTGGCCGCAACTTTTCCCCTC