Contig 013200:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF028A22-                                                                    TT
                      ____________________________________________________________
consensus                                                                       TT
 
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rJMFF028A22-          TGATTGACATCAACCTTTGATAAGTGAAGTAAAAAATAAAAATATTCAGTACTAGGAACA
rJMSF001L15-                                                 AAATATTCAGTACTAGGAACA
                      ____________________________________________________________
consensus             TGATTGACATCAACCTTTGATAAGTGAAGTAAAAAATAAAAATATTCAGTACTAGGAACA
 
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rJMFF028A22-          CTGGAGGACACAGGAATATCACTGTGAAACCCACAACACATTCAGCATATATATGGCAAG
rJMSF001L15-          CTGGAGGACACAGGAATATCACTGTGAAACCCACAACACATTCAGCATATATATGGCAAG
                      ____________________________________________________________
consensus             CTGGAGGACACAGGAATATCACTGTGAAACCCACAACACATTCAGCATATATATGGCAAG
 
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rJMFF028A22-          TTATGCATAGAACTATAGCAGATTAGAAGATGATTTCACACCCTAGCTGCTGCTGCAGCT
rJMSF001L15-          TTATGCATAGAACTATAGCAGATTAGAAGATGATTTCACACCCTAGCTGCTGCTGCAGCT
                      ____________________________________________________________
consensus             TTATGCATAGAACTATAGCAGATTAGAAGATGATTTCACACCCTAGCTGCTGCTGCAGCT
 
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rJMFF028A22-          TCCTTGATTTGCTCAATAGTGAAAACTCCAAAGCAGTCGTCGTCAGTGACAGCGTTTATC
rJMSF001L15-          TCCTTGATTTGCTCAATAGTGAAAACTCCAAAGCAGTCGTCGTCAGTGACAGCGTTTATC
                      ____________________________________________________________
consensus             TCCTTGATTTGCTCAATAGTGAAAACTCCAAAGCAGTCGTCGTCAGTGACAGCGTTTATC
 
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rJMFF028A22-          GCTGCATAGGCAACATCATCAACACTAACCGGGGGAGCGAGAAGCAAATCGGAGGCAGGA
rJMSF001L15-          GCTGCATAGGCAACATCATCAACACTAACCGGGGGAGCGAGAAGCAAATCGGAGGCAGGA
                      ____________________________________________________________
consensus             GCTGCATAGGCAACATCATCAACACTAACCGGGGGAGCGAGAAGCAAATCGGAGGCAGGA
 
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rJMFF028A22-          AGTGAGCTAAGAGGTTTAGTAAAGTTCTCTACAGCACTTAGTATTCTCTCAATTGGCTGC
rJMSF001L15-          AGTGAGCTAAGAGGTTTAGTAAAGTTCTCTACAGCACTTAGTATTCTCTCAATTGGCTGC
                      ____________________________________________________________
consensus             AGTGAGCTAAGAGGTTTAGTAAAGTTCTCTACAGCACTTAGTATTCTCTCAATTGGCTGC
 
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rJMFF028A22-          CCTATCAAATCCAGAGGAATCTCAAAGCCATCAACCTTCCTCTTCCCATATATAAAGCCT
rJMSF001L15-          CCTATCAAATCCAGAGGAATCTCAAAGCCATCAACCTTCCTCTTCCCATATATAAAGCCT
                      ____________________________________________________________
consensus             CCTATCAAATCCAGAGGAATCTCAAAGCCATCAACCTTCCTCTTCCCATATATAAAGCCT
 
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rJMFF028A22-          GGTCTTAAGACAACACCTGAGTTTGGATATTTGGAGAGGACCTCTGATTCTGCTTTCCTC
rJMSF001L15-          GGTCTTAAGACAACACCTGAGTTTGGATATTTGGAGAGGACCTCTGATTCTGCTTTCCTC
                      ____________________________________________________________
consensus             GGTCTTAAGACAACACCTGAGTTTGGATATTTGGAGAGGACCTCTGATTCTGCTTTCCTC
 
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rJMFF028A22-          TTTCCTGTGAAGTAACCTGATGATAATAGAAAGGATGGGAGATTGTAATCGTGGACTGAG
rJMSF001L15-          TTTCCTGTGAAGTAACCTGATGATAATAGAAAGGATGGGAGATTGTAATCGTGGACTGAG
                      ____________________________________________________________
consensus             TTTCCTGTGAAGTAACCTGATGATAATAGAAAGGATGGGAGATTGTAATCGTGGACTGAG
 
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rJMFF028A22-          ATCAAGATGAACTTTGGAATCCCATAATCTTTAGCAGCATTCACGGCCACTACATTTGCC
rJMSF001L15-          ATCAAGATGAACTTTGGAATCCCATAATCTTTAGCAGCATTCACGGCCACTACATTTGCC
                      ____________________________________________________________
consensus             ATCAAGATGAACTTTGGAATCCCATAATCTTTAGCAGCATTCACGGCCACTACATTTGCC
 
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rJMFF028A22-          TCACCATTAATCCTTTTCATCTGTTCCTCACTTCCAAAACCCCCAAGTGTTGAAACAACT
rJMSF001L15-          TCACCATTAATCCTTTTCATCTGTTCCTCACTTCCAAAACCCCCAAGTGTTGAAACAACT
JMFF028A22+                                                AACCCCCAAGTGTTGAAACAACT
                      ____________________________________________________________
consensus             TCACCATTAATCCTTTTCATCTGTTCCTCACTTCCAAAACCCCCAAGTGTTGAAACAACT
 
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rJMFF028A22-          GCTGTAGCCCCTAAAAGCACGTCATCCCAGTTTACGTAGAAAACATCACCTGAAATCCAA
rJMSF001L15-          GCTGTAGCCCCTAAAAGCACGTCATCCCAGTTTACGTAGAAAACATCACCTGAAATCCAA
JMFF028A22+           GCTGTAGCCCCTAAAAGCACGTCATCCCAGTTTACGTAGAAAACATCACCNGAAATCCAA
                      ____________________________________________________________
consensus             GCTGTAGCCCCTAAAAGCACGTCATCCCAGTTTACGTAGAAAACATCACCTGAAATCCAA
 
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rJMFF028A22-          GTGACTTGATCTAGC                                             
rJMSF001L15-          GTGACTTGATCTAGCCATGATTCGGAGTATGAGGGACGGCCTGATCTG            
JMFF028A22+           GTGACTTGATCTAGCCATGATTCGGAGTATGAGGGACGGCCTGATCTGCTCAGACTTATA
                      ____________________________________________________________
consensus             GTGACTTGATCTAGCCATGATTCGGAGTATGAGGGACGGCCTGATCTGCTCAGACTTATA
 
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JMFF028A22+           ACCTCGACACCCTTGGACACTGCAGCTTTGCATATTGCAGAGCCAACAAAACCACTGCCT
                      ____________________________________________________________
consensus             ACCTCGACACCCTTGGACACTGCAGCTTTGCATATTGCAGAGCCAACAAAACCACTGCCT
 
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JMFF028A22+           CCCAACACCACAATTCGCTCACTCTTCACATCAGCCACAACATCAATTGTCCCTGTGTTT
                      ____________________________________________________________
consensus             CCCAACACCACAATTCGCTCACTCTTCACATCAGCCACAACATCAATTGTCCCTGTGTTT
 
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JMFF028A22+           GAATTTTCCCGTATACCAGCTCCAGAATAATTGCATCTGACACCAACCTTGCAAAAGCGA
                      ____________________________________________________________
consensus             GAATTTTCCCGTATACCAGCTCCAGAATAATTGCATCTGACACCAACCTTGCAAAAGCGA
 
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JMFF028A22+           GGGCGAGAGAGTGAAGAATGTTGAGTGGTGAAGGAAGGAAACAGAGCTCTGCTCCGGCCG
JMSF001L15+                                                                    CCG
                      ____________________________________________________________
consensus             GGGCGAGAGAGTGAAGAATGTTGAGTGGTGAAGGAAGGAAACAGAGCTCTGCTCCGGCCG
 
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JMFF028A22+           TGAAGAGACGGCGCCTTGGAAACGGCGCCGACGTAGCAGAGAGAGGTCGTCATCTTCGGC
JMFF005A21+                                       CGACGTAGCAGAGAGAGGTNGTCATCTTCGGC
JMSF001L15+           TGAAGAGACGGCGCCTTGGAAACGGCGCCGACGTAGCAGAGAGAGGTCGTCATCTTCGGC
                      ____________________________________________________________
consensus             TGAAGAGACGGCGCCTTGGAAACGGCGCCGACGTAGCAGAGAGAGGTCGTCATCTTCGGC
 
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JMFF028A22+           TTCCGCTGCGGAGAAGAACACGAGAGAGAGAGAGAGAGAGATAGAGAGAGAACGAGGCGA
JMFF005A21+           TTCCNNNGCGGAGAAGANCNCNAGAGAGAGAGAGAGAGAGATAGAGAGAGAACGAGGCGA
JMSF001L15+           TTCCGCTGCGGAGAAGAACACGAGAGAGAGAGAGAGAGAGATAGAGAGAGAACGAGGCGA
                      ____________________________________________________________
consensus             TTCCGCTGCGGAGAAGAACACGAGAGAGAGAGAGAGAGAGATAGAGAGAGAACGAGGCGA
 
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JMFF028A22+           CGGTTTCAGGCT                                                
JMFF005A21+           CGGTTTCAGGCT                                                
JMSF001L15+           CGGTTTCAGGCTTCTTCGAGCACCCTGAACAAAAAGAGAATCAAAAATACGAAGGAGAGA
                      ____________________________________________________________
consensus             CGGTTTCAGGCTTCTTCGAGCACCCTGAACAAAAAGAGAATCAAAAATACGAAGGAGAGA
 
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JMSF001L15+           AGGCTGTAAGAGTGGCAAAAATTCAATTGTGAAAGAGATTTTGGTAAGCTTTGTGGCGCC
                      ____________________________________________________________
consensus             AGGCTGTAAGAGTGGCAAAAATTCAATTGTGAAAGAGATTTTGGTAAGCTTTGTGGCGCC
 
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JMSF001L15+           AGATTTGGGAGTGTTTATATGGTGGTCGTCACTCCTCACGCTTCTGAAGCTTTCATTTCC
                      ____________________________________________________________
consensus             AGATTTGGGAGTGTTTATATGGTGGTCGTCACTCCTCACGCTTCTGAAGCTTTCATTTCC