Contig 013195:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS164H10Sequence596013195 (2)ref|XP_010317114.1|3e-35PREDICTED: uncharacterized protein LOC101246016 isoform X2 [Solanum lycopersicu
JMSF041P08Sequence606013195 (2)ref|XP_010317114.1|4e-35PREDICTED: uncharacterized protein LOC101246016 isoform X2 [Solanum lycopersicu782008686 (3)ref|XP_010320943.1|2e-21PREDICTED: coilin isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF041P08+                                         TANGAAGTTCCTCGGATGCCTTCCTTNTCT
                      ____________________________________________________________
consensus                                           TANGAAGTTCCTCGGATGCCTTCCTTNTCT
 
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JMSF041P08+           TGGAGANTGCAACTCCATCCAGCAAATTCTTATGTAAATTGTAATCATCCACCTGGCCTC
JMFS164H10+                  TGCAACTCCATCCAGCAAATTCTTATGTAAATTGTAATCATCCACCTGGCCTC
                      ____________________________________________________________
consensus             TGGAGANTGCAACTCCATCCAGCAAATTCTTATGTAAATTGTAATCATCCACCTGGCCTC
 
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JMSF041P08+           TCCTCTCCTNTTCAGGTCTGTCACTCTCATAGCCCCCATGTTCCTTGTTAAATGCCTCAT
JMFS164H10+           TCCTCTCCTNTTCAGGTCTGTCACTCTCATAGCCCCCATGTTCCTTGTTAAATGCCTCAT
                      ____________________________________________________________
consensus             TCCTCTCCTNTTCAGGTCTGTCACTCTCATAGCCCCCATGTTCCTTGTTAAATGCCTCAT
 
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JMSF041P08+           TTGCCAAAAGCAGAGCTTTGGTATTTACAGATGGTTTCTCAACACTTTGGACATTCTCCA
JMFS164H10+           TTGCCAAAAGCAGAGCTTTGGTATTTACAGATGGTTTCTCAACACTTTGGACATTCTCCA
                      ____________________________________________________________
consensus             TTGCCAAAAGCAGAGCTTTGGTATTTACAGATGGTTTCTCAACACTTTGGACATTCTCCA
 
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JMSF041P08+           CCAAATTAGGTGCATCCCNTACAATAACCAACGAACCTCCCTTCTTCTTCTTCTTNTTCT
JMFS164H10+           CCAAATTAGGTGCATCCCCTACAATAACCAACGAACCTCCCTTCTTCTTCTTCTTCTTCT
                      ____________________________________________________________
consensus             CCAAATTAGGTGCATCCCCTACAATAACCAACGAACCTCCCTTCTTCTTCTTCTTCTTCT
 
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JMSF041P08+           TCTTCACACTGATTACATCTTTATCTTTAAAGAAACAAGTTGACTCAAAAGGTGGCAAGA
JMFS164H10+           TCTTCACACTGATTACATCTTTATCTTTAAAGAAACAAGTTGACTCAAAAGGTGGCAAGA
                      ____________________________________________________________
consensus             TCTTCACACTGATTACATCTTTATCTTTAAAGAAACAAGTTGACTCAAAAGGTGGCAAGA
 
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JMSF041P08+           CAAACCCATCCATAGAGAGGAGGATGCCATGGGGACAGGAGTTATGGAGTTTGAAGTTGT
JMFS164H10+           CAAACCCATCCATAGAGAGGAGGATGCCATGGGGACAGGAGTTATGGAGTTTGAAGTTGT
                      ____________________________________________________________
consensus             CAAACCCATCCATAGAGAGGAGGATGCCATGGGGACAGGAGTTATGGAGTTTGAAGTTGT
 
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JMSF041P08+           GGAAGAGATCGGAAGAGAATTGGGAGATTATTGTGTGGTGCGTGGGTTTGAGGAGAAGCC
JMFS164H10+           GGAAGAGATCGGAAGAGAATTGGGAGATTATTGTGTGGTGCGTGGGTTTGAGGAGAAGCC
                      ____________________________________________________________
consensus             GGAAGAGATCGGAAGAGAATTGGGAGATTATTGTGTGGTGCGTGGGTTTGAGGAGAAGCC
 
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JMSF041P08+           AGCTTCTCTCGAGGCCCTNTGATTTNTGGGAATCATTGAGAATGTCACCATCTTCGAACA
JMFS164H10+           AGCTTCTCTCGAGGCCCTCTGATTTCTGGGAATCATTGAGAATGTCACCATCTTCGAACA
                      ____________________________________________________________
consensus             AGCTTCTCTCGAGGCCCTCTGATTTCTGGGAATCATTGAGAATGTCACCATCTTCGAACA
 
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JMSF041P08+           CCACTTTGATCCTTAAACCCTCCTCGTCCTCCATCGCGTTTGCATATCACTGATTGATTG
JMFS164H10+           CCACTTTGATCCTTAAACCCTCCTCGTCCTCCATCGCGTTTGCATATCACTGATTGATTG
                      ____________________________________________________________
consensus             CCACTTTGATCCTTAAACCCTCCTCGTCCTCCATCGCGTTTGCATATCACTGATTGATTG
 
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JMSF041P08+           CTAACCTCCTCCCTCCGGCTTAAA                                    
JMFS164H10+           CTAACCTCCTCCCTCCGGCTTAAACCCTGGTACCAGCTCCGACGTCCGACGTAAACTTGG
                      ____________________________________________________________
consensus             CTAACCTCCTCCCTCCGGCTTAAACCCTGGTACCAGCTCCGACGTCCGACGTAAACTTGG