Contig 013194:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS084F03Sequence627013194 (2)ref|XP_004231037.1|1e-62PREDICTED: E3 ubiquitin-protein ligase UPL3 [Solanum lycopersicum] ref|XP_010315
JMFS164C12Sequence504013194 (2)ref|XP_009771655.1|9e-81PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS084F03+                                     TCATCTTCATCTTCATCATCAGAGATATCATCAT
                      ____________________________________________________________
consensus                                       TCATCTTCATCTTCATCATCAGAGATATCATCAT
 
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JMFS084F03+           CTTCAATCACCAAAGGACTGTCAACTTCAACAGGAGGAATGTCCTCATCCTCAGAAGTGG
                      ____________________________________________________________
consensus             CTTCAATCACCAAAGGACTGTCAACTTCAACAGGAGGAATGTCCTCATCCTCAGAAGTGG
 
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JMFS084F03+           AGTTCCCATCCACAGGATTAACTTCTGATTCTTTATCCAAAGCAGCTCTTCTATGAGAAG
                      ____________________________________________________________
consensus             AGTTCCCATCCACAGGATTAACTTCTGATTCTTTATCCAAAGCAGCTCTTCTATGAGAAG
 
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JMFS084F03+           CATATCTTGTTTGTGGTCCTCTTCCCTCTTCTTGAGCTGATTTCAGAACAGCCTTACCCT
                      ____________________________________________________________
consensus             CATATCTTGTTTGTGGTCCTCTTCCCTCTTCTTGAGCTGATTTCAGAACAGCCTTACCCT
 
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JMFS084F03+           TTCCTTTTAATGAGCTTGCATTTTTTTCTTGTGATGATCCCTTTGCAGCATCTGTTATAT
                      ____________________________________________________________
consensus             TTCCTTTTAATGAGCTTGCATTTTTTTCTTGTGATGATCCCTTTGCAGCATCTGTTATAT
 
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JMFS084F03+           TCACAACAGACCTTGATCGCGTAGAATGGCGACGAGAAGCAGGAGTTGAAGTAGATGGAG
JMFS164C12+                                               AAGCAGGAGTTGAAGTAGATGGAG
                      ____________________________________________________________
consensus             TCACAACAGACCTTGATCGCGTAGAATGGCGACGAGAAGCAGGAGTTGAAGTAGATGGAG
 
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JMFS084F03+           ATGGTGCACCAGCTCCAGTAGGCATGGTACTTGTCTCAGAATTGCCAACTGATGCAGAGG
JMFS164C12+           ATGGTGCACCAGCTCCAGTAGGCATGGTACTTGTCTCAGAATTGCCAACTGATGCAGAGG
                      ____________________________________________________________
consensus             ATGGTGCACCAGCTCCAGTAGGCATGGTACTTGTCTCAGAATTGCCAACTGATGCAGAGG
 
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JMFS084F03+           TCTTTTGTTCAGATTCCGTTCTGTGAACATGGGGCCAGAGGAAGTCTTCTATGGCAGCTA
JMFS164C12+           TCTTTTGTTCAGATTCCGTTCTGTGAACATGGGGCCAGAGGAAGTCTTCTATGGCAGCTA
                      ____________________________________________________________
consensus             TCTTTTGTTCAGATTCCGTTCTGTGAACATGGGGCCAGAGGAAGTCTTCTATGGCAGCTA
 
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JMFS084F03+           AAGTTGCAAGTGGATCAATCAATACAATGTTTGACGAATAATCACGAAGGGACTTTTCAC
JMFS164C12+           AAGTTGCAAGTGGATCAATCAATACAATGTTTGACGAATAATCACGAAGGGACTTTTCAC
                      ____________________________________________________________
consensus             AAGTTGCAAGTGGATCAATCAATACAATGTTTGACGAATAATCACGAAGGGACTTTTCAC
 
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JMFS084F03+           CTTGTGCTCTACAAAGACGCAGCCTGAAAGGTTGAGATAAAGCACTTAAGCCAGAAGAAA
JMFS164C12+           CTTGTGCTCTACAAAGACGCAGCCTGAAAGGTTGAGATAAAGCACTTAAGCCAGAAGAAA
                      ____________________________________________________________
consensus             CTTGTGCTCTACAAAGACGCAGCCTGAAAGGTTGAGATAAAGCACTTAAGCCAGAAGAAA
 
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JMFS084F03+           GGCGTGCAACAGG                                               
JMFS164C12+           GGCGTGCAACAGGGAACCGCTCCAAGGAAGAGAGAGCATTTTGAAGCTTTTGAACCAAAA
                      ____________________________________________________________
consensus             GGCGTGCAACAGGGAACCGCTCCAAGGAAGAGAGAGCATTTTGAAGCTTTTGAACCAAAA
 
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JMFS164C12+           CACTCATAGGAGCCAAATTCCCTTCATCAACACCAACAGGAAGGGCAACAGCAATAAAAG
                      ____________________________________________________________
consensus             CACTCATAGGAGCCAAATTCCCTTCATCAACACCAACAGGAAGGGCAACAGCAATAAAAG
 
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JMFS164C12+           ACTTGTATCTTTTGATTGCTTGTTGTCGAAGCCTAGAAAGATGAGGATCTGAAATTCTTT
                      ____________________________________________________________
consensus             ACTTGTATCTTTTGATTGCTTGTTGTCGAAGCCTAGAAAGATGAGGATCTGAAATTCTTT
 
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JMFS164C12+           CCTTAGAGAAGTATCCACATGAAAAATACTTCAGCAACGACTCCACAACACCACTTCCAA
                      ____________________________________________________________
consensus             CCTTAGAGAAGTATCCACATGAAAAATACTTCAGCAACGACTCCACAACACCACTTCCAA