Contig 013194:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS084F03Sequence627013194 (2)ref|XP_004231037.1|1e-62PREDICTED: E3 ubiquitin-protein ligase UPL3 [Solanum lycopersicum] ref|XP_010315
JMFS164C12Sequence504013194 (2)ref|XP_009771655.1|9e-81PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS084F03+ TCATCTTCATCTTCATCATCAGAGATATCATCAT
                      ____________________________________________________________
consensus TCATCTTCATCTTCATCATCAGAGATATCATCAT
 
. : . : . : . : . : . :
JMFS084F03+ CTTCAATCACCAAAGGACTGTCAACTTCAACAGGAGGAATGTCCTCATCCTCAGAAGTGG
                      ____________________________________________________________
consensus CTTCAATCACCAAAGGACTGTCAACTTCAACAGGAGGAATGTCCTCATCCTCAGAAGTGG
 
. : . : . : . : . : . :
JMFS084F03+ AGTTCCCATCCACAGGATTAACTTCTGATTCTTTATCCAAAGCAGCTCTTCTATGAGAAG
                      ____________________________________________________________
consensus AGTTCCCATCCACAGGATTAACTTCTGATTCTTTATCCAAAGCAGCTCTTCTATGAGAAG
 
. : . : . : . : . : . :
JMFS084F03+ CATATCTTGTTTGTGGTCCTCTTCCCTCTTCTTGAGCTGATTTCAGAACAGCCTTACCCT
                      ____________________________________________________________
consensus CATATCTTGTTTGTGGTCCTCTTCCCTCTTCTTGAGCTGATTTCAGAACAGCCTTACCCT
 
. : . : . : . : . : . :
JMFS084F03+ TTCCTTTTAATGAGCTTGCATTTTTTTCTTGTGATGATCCCTTTGCAGCATCTGTTATAT
                      ____________________________________________________________
consensus TTCCTTTTAATGAGCTTGCATTTTTTTCTTGTGATGATCCCTTTGCAGCATCTGTTATAT
 
. : . : . : . : . : . :
JMFS084F03+ TCACAACAGACCTTGATCGCGTAGAATGGCGACGAGAAGCAGGAGTTGAAGTAGATGGAG
JMFS164C12+ AAGCAGGAGTTGAAGTAGATGGAG
                      ____________________________________________________________
consensus TCACAACAGACCTTGATCGCGTAGAATGGCGACGAGAAGCAGGAGTTGAAGTAGATGGAG
 
. : . : . : . : . : . :
JMFS084F03+ ATGGTGCACCAGCTCCAGTAGGCATGGTACTTGTCTCAGAATTGCCAACTGATGCAGAGG
JMFS164C12+ ATGGTGCACCAGCTCCAGTAGGCATGGTACTTGTCTCAGAATTGCCAACTGATGCAGAGG
                      ____________________________________________________________
consensus ATGGTGCACCAGCTCCAGTAGGCATGGTACTTGTCTCAGAATTGCCAACTGATGCAGAGG
 
. : . : . : . : . : . :
JMFS084F03+ TCTTTTGTTCAGATTCCGTTCTGTGAACATGGGGCCAGAGGAAGTCTTCTATGGCAGCTA
JMFS164C12+ TCTTTTGTTCAGATTCCGTTCTGTGAACATGGGGCCAGAGGAAGTCTTCTATGGCAGCTA
                      ____________________________________________________________
consensus TCTTTTGTTCAGATTCCGTTCTGTGAACATGGGGCCAGAGGAAGTCTTCTATGGCAGCTA
 
. : . : . : . : . : . :
JMFS084F03+ AAGTTGCAAGTGGATCAATCAATACAATGTTTGACGAATAATCACGAAGGGACTTTTCAC
JMFS164C12+ AAGTTGCAAGTGGATCAATCAATACAATGTTTGACGAATAATCACGAAGGGACTTTTCAC
                      ____________________________________________________________
consensus AAGTTGCAAGTGGATCAATCAATACAATGTTTGACGAATAATCACGAAGGGACTTTTCAC
 
. : . : . : . : . : . :
JMFS084F03+ CTTGTGCTCTACAAAGACGCAGCCTGAAAGGTTGAGATAAAGCACTTAAGCCAGAAGAAA
JMFS164C12+ CTTGTGCTCTACAAAGACGCAGCCTGAAAGGTTGAGATAAAGCACTTAAGCCAGAAGAAA
                      ____________________________________________________________
consensus CTTGTGCTCTACAAAGACGCAGCCTGAAAGGTTGAGATAAAGCACTTAAGCCAGAAGAAA
 
. : . : . : . : . : . :
JMFS084F03+ GGCGTGCAACAGG
JMFS164C12+ GGCGTGCAACAGGGAACCGCTCCAAGGAAGAGAGAGCATTTTGAAGCTTTTGAACCAAAA
                      ____________________________________________________________
consensus GGCGTGCAACAGGGAACCGCTCCAAGGAAGAGAGAGCATTTTGAAGCTTTTGAACCAAAA
 
. : . : . : . : . : . :
JMFS164C12+ CACTCATAGGAGCCAAATTCCCTTCATCAACACCAACAGGAAGGGCAACAGCAATAAAAG
                      ____________________________________________________________
consensus CACTCATAGGAGCCAAATTCCCTTCATCAACACCAACAGGAAGGGCAACAGCAATAAAAG
 
. : . : . : . : . : . :
JMFS164C12+ ACTTGTATCTTTTGATTGCTTGTTGTCGAAGCCTAGAAAGATGAGGATCTGAAATTCTTT
                      ____________________________________________________________
consensus ACTTGTATCTTTTGATTGCTTGTTGTCGAAGCCTAGAAAGATGAGGATCTGAAATTCTTT
 
. : . : . : . : . : . :
JMFS164C12+ CCTTAGAGAAGTATCCACATGAAAAATACTTCAGCAACGACTCCACAACACCACTTCCAA
                      ____________________________________________________________
consensus CCTTAGAGAAGTATCCACATGAAAAATACTTCAGCAACGACTCCACAACACCACTTCCAA