Contig 013182:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039C20Sequence446009550 (2)emb|CDP06702.1|1e-21unnamed protein product [Coffea canephora]775013182 (4)ref|XP_011094705.1|5e-104PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic
JMFS101D04Sequence617013182 (4)ref|XP_011094705.1|6e-113PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic
JMFS149C06Sequence618013182 (4)ref|XP_009622743.1|2e-70PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic
JMSF047N13Sequence655009550 (2)emb|CDP06702.1|3e-59unnamed protein product [Coffea canephora]682013182 (4)ref|XP_009622743.1|6e-90PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic

Alignment

This contig is upended


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JMFS101D04-                                                   TGATGCTAGAGATGGTAAAT
                      ____________________________________________________________
consensus                                                     TGATGCTAGAGATGGTAAAT
 
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JMFS101D04-           GGTGCAGGAATAAAACCGGATGTAGTTTCTTATAATACTCTCATTGATGGCTGTATTTTG
                      ____________________________________________________________
consensus             GGTGCAGGAATAAAACCGGATGTAGTTTCTTATAATACTCTCATTGATGGCTGTATTTTG
 
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JMFS101D04-           GTTGATGACAGCGCGGGGGCACTTTCCTATTTCAATGAGATGCGAGCAGCAGGCATTGCA
                      ____________________________________________________________
consensus             GTTGATGACAGCGCGGGGGCACTTTCCTATTTCAATGAGATGCGAGCAGCAGGCATTGCA
 
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JMFS101D04-           CCTAATAAAATCAGTTACACAACGTTGATGAAAGCTTTTGCTTTGTCTGGCCAACCAAAG
rJMFF039C20+                                                                CCAAAG
                      ____________________________________________________________
consensus             CCTAATAAAATCAGTTACACAACGTTGATGAAAGCTTTTGCTTTGTCTGGCCAACCAAAG
 
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JMFS101D04-           ATAGCGAACAAGGTATTTGACGAAATGCTAAAGGATCCTCGAATCAGGGTTGATTTGGCT
rJMSF047N13+                                             TCCTCGAATCAGGGTTGATTTGNCT
rJMFF039C20+          ATAGCGAACAAGGTATTTGACGAAATGCTAAAGGATCCTCGAATCAGGGTTGATTTGGCT
                      ____________________________________________________________
consensus             ATAGCGAACAAGGTATTTGACGAAATGCTAAAGGATCCTCGAATCAGGGTTGATTTGGCT
 
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JMFS101D04-           GCTTGGAATATGTTGGTTGAGGGGTATTGTAAGCTGGGGAAGATTGATGAGGCCAAGTCT
rJMSF047N13+          GCTTGGAATATGTTGGTTGAGGGGGTATTGTAAGCTGGGAAGANTGATGAGGCCAAGTCT
rJMFF039C20+          GCTTGGAATATGTTGGTTGAGGGGTATTGTAAGCTGGGGAAGATTGATGAGGCCAAGTCT
                      ____________________________________________________________
consensus             GCTTGGAATATGTTGGTTGAGGGGTATTGTAAGCTGGGGAAGATTGATGAGGCCAAGTCT
 
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JMFS101D04-           ATAATTCAGAGGATGAAAGAGAGTGGAACTTTTCCGAACGTGGCTACCTATGGGAGTTTA
rJMSF047N13+          ATAATTCAGAGGATGAAAGAGAGTGGAACTTTTCCGAACGTGGCTACCTATGGGAGTTTA
rJMFF039C20+          ATAATTCAGAGGATGAAAGAGAGTGGAACTTTTCCGAACGTGGCTACCTATGGGAGTTTA
JMFS149C06+                                                     GCTACCTATGGGAGTTTA
                      ____________________________________________________________
consensus             ATAATTCAGAGGATGAAAGAGAGTGGAACTTTTCCGAACGTGGCTACCTATGGGAGTTTA
 
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JMFS101D04-           GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
rJMSF047N13+          GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
rJMFF039C20+          GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
JMFS149C06+           GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
                      ____________________________________________________________
consensus             GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
 
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JMFS101D04-           AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
rJMSF047N13+          AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
rJMFF039C20+          AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
JMFS149C06+           AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
                      ____________________________________________________________
consensus             AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
 
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JMFS101D04-           CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
rJMSF047N13+          CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
rJMFF039C20+          CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
JMFS149C06+           CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
                      ____________________________________________________________
consensus             CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
 
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JMFS101D04-           TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAAC   
rJMSF047N13+          TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAACAAG
rJMFF039C20+          TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAACAAG
JMFS149C06+           TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAACAAG
                      ____________________________________________________________
consensus             TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAACAAG
 
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rJMSF047N13+          ACAAAGTATAAAAGGATTTACGTGGAGATGCACTCAAGGATGTTCACAAGCAAGCATGCT
rJMFF039C20+          ACAAAGTATAAAAGGATTTACGTGGAGATGCACTCAAGGATGTTCACAAGCAAGCATGCT
JMFS149C06+           ACAAAGTATAAAAGGATTTACGTGGAGATGCACTCAAGGATGTTCACAAGCAAGCATGCT
                      ____________________________________________________________
consensus             ACAAAGTATAAAAGGATTTACGTGGAGATGCACTCAAGGATGTTCACAAGCAAGCATGCT
 
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rJMSF047N13+          TCAAGAGCCAGGCAGGATCGAAGAAGGGAGAGGAAAAGAGCAGCAGAGGCTTTCAAGTTT
rJMFF039C20+          TCAAGAGCCAGGCAGGATCGAAGAAGGGAGAGGAAAAGAGCAGCAGAGGCTTTCAAGTTT
JMFS149C06+           TCAAGAGCCAGGCAGGATCGAAGAAGGGAGAGGAAAAGAGCAGCAGAGGCTTTCAAGTTT
                      ____________________________________________________________
consensus             TCAAGAGCCAGGCAGGATCGAAGAAGGGAGAGGAAAAGAGCAGCAGAGGCTTTCAAGTTT
 
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rJMSF047N13+          TGGTTGGGATTGCCCAATTCTTACTATGGAAGTGAATGGCGCCTTGATTCTGTATCCGAA
rJMFF039C20+          TGGTTGGGATTGCCCAATTCTTACTATGGAAGTGAATGGCGCCTTGATTCTGTATCCGAA
JMFS149C06+           TGGTTGGGATTGCCCAATTCTTACTATGGAAGTGAATGGCGCCTTGATTCTGTATCCGAA
                      ____________________________________________________________
consensus             TGGTTGGGATTGCCCAATTCTTACTATGGAAGTGAATGGCGCCTTGATTCTGTATCCGAA
 
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rJMSF047N13+          GAAGATGAATATACTTCTGGCACTGCCTAAAGACATGCCACAAAATAGTAGTGTTGAGAA
rJMFF039C20+          GAAGATGAATATACTTCTGGCACTGCCTAAAGACATGCCACAAAATAGTAGTGTTGAGAA
JMFS149C06+           GAAGATGAATATACTTCTGGCACTGCCTAAAGACATGCCACAAAATAGTAGTGTTGAGAA
                      ____________________________________________________________
consensus             GAAGATGAATATACTTCTGGCACTGCCTAAAGACATGCCACAAAATAGTAGTGTTGAGAA
 
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rJMSF047N13+          AAAGAGATGACNCTGAAAAATAAATTTATAAGATTGTACCATGATCATGTATCAAAT   
rJMFF039C20+          AAAGAGATGACACTGAAAAATAAATTTATAAGATTGTACCATGATCATGTATCAAATTAA
JMFS149C06+           AAAGAGATGACACTGAAAAATAAATTTATAAGATTGTACCATGATCATGTATCAAATTAA
                      ____________________________________________________________
consensus             AAAGAGATGACACTGAAAAATAAATTTATAAGATTGTACCATGATCATGTATCAAATTAA
 
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rJMFF039C20+          ATATATACAGGCCTTGAGTTCC                                      
JMFS149C06+           ATATATACAGGCCTTGAGTTCCXXXXXXXXXXXXXXXXXXXXXXCTCAAGACTAGTTCTC
                      ____________________________________________________________
consensus             ATATATACAGGCCTTGAGTTCCNNNNNNNNNNNNNNNNNNNNNNCTCAAGACTAGTTCTC