Contig 013182:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039C20Sequence446009550 (2)emb|CDP06702.1|1e-21unnamed protein product [Coffea canephora]775013182 (4)ref|XP_011094705.1|5e-104PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic
JMFS101D04Sequence617013182 (4)ref|XP_011094705.1|6e-113PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic
JMFS149C06Sequence618013182 (4)ref|XP_009622743.1|2e-70PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic
JMSF047N13Sequence655009550 (2)emb|CDP06702.1|3e-59unnamed protein product [Coffea canephora]682013182 (4)ref|XP_009622743.1|6e-90PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic

Alignment

This contig is upended


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JMFS101D04- TGATGCTAGAGATGGTAAAT
                      ____________________________________________________________
consensus TGATGCTAGAGATGGTAAAT
 
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JMFS101D04- GGTGCAGGAATAAAACCGGATGTAGTTTCTTATAATACTCTCATTGATGGCTGTATTTTG
                      ____________________________________________________________
consensus GGTGCAGGAATAAAACCGGATGTAGTTTCTTATAATACTCTCATTGATGGCTGTATTTTG
 
. : . : . : . : . : . :
JMFS101D04- GTTGATGACAGCGCGGGGGCACTTTCCTATTTCAATGAGATGCGAGCAGCAGGCATTGCA
                      ____________________________________________________________
consensus GTTGATGACAGCGCGGGGGCACTTTCCTATTTCAATGAGATGCGAGCAGCAGGCATTGCA
 
. : . : . : . : . : . :
JMFS101D04- CCTAATAAAATCAGTTACACAACGTTGATGAAAGCTTTTGCTTTGTCTGGCCAACCAAAG
rJMFF039C20+ CCAAAG
                      ____________________________________________________________
consensus CCTAATAAAATCAGTTACACAACGTTGATGAAAGCTTTTGCTTTGTCTGGCCAACCAAAG
 
. : . : . : . : . : . :
JMFS101D04- ATAGCGAACAAGGTATTTGACGAAATGCTAAAGGATCCTCGAATCAGGGTTGATTTGGCT
rJMSF047N13+ TCCTCGAATCAGGGTTGATTTGNCT
rJMFF039C20+ ATAGCGAACAAGGTATTTGACGAAATGCTAAAGGATCCTCGAATCAGGGTTGATTTGGCT
                      ____________________________________________________________
consensus ATAGCGAACAAGGTATTTGACGAAATGCTAAAGGATCCTCGAATCAGGGTTGATTTGGCT
 
. : . : . : . : . : . :
JMFS101D04- GCTTGGAATATGTTGGTTGAGGGGTATTGTAAGCTGGGGAAGATTGATGAGGCCAAGTCT
rJMSF047N13+ GCTTGGAATATGTTGGTTGAGGGGGTATTGTAAGCTGGGAAGANTGATGAGGCCAAGTCT
rJMFF039C20+ GCTTGGAATATGTTGGTTGAGGGGTATTGTAAGCTGGGGAAGATTGATGAGGCCAAGTCT
                      ____________________________________________________________
consensus GCTTGGAATATGTTGGTTGAGGGGTATTGTAAGCTGGGGAAGATTGATGAGGCCAAGTCT
 
. : . : . : . : . : . :
JMFS101D04- ATAATTCAGAGGATGAAAGAGAGTGGAACTTTTCCGAACGTGGCTACCTATGGGAGTTTA
rJMSF047N13+ ATAATTCAGAGGATGAAAGAGAGTGGAACTTTTCCGAACGTGGCTACCTATGGGAGTTTA
rJMFF039C20+ ATAATTCAGAGGATGAAAGAGAGTGGAACTTTTCCGAACGTGGCTACCTATGGGAGTTTA
JMFS149C06+ GCTACCTATGGGAGTTTA
                      ____________________________________________________________
consensus ATAATTCAGAGGATGAAAGAGAGTGGAACTTTTCCGAACGTGGCTACCTATGGGAGTTTA
 
. : . : . : . : . : . :
JMFS101D04- GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
rJMSF047N13+ GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
rJMFF039C20+ GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
JMFS149C06+ GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
                      ____________________________________________________________
consensus GCAAATGGAATTGCATTAGCTAGGAAGCCAGGAGAAGCACTACTACTATGGAGTGAAATA
 
. : . : . : . : . : . :
JMFS101D04- AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
rJMSF047N13+ AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
rJMFF039C20+ AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
JMFS149C06+ AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
                      ____________________________________________________________
consensus AAGGAGAGATGTGGAATAGGAAAGGGAGTGGAACCTGATTCTTCTCCAGCCCTCCCGCCA
 
. : . : . : . : . : . :
JMFS101D04- CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
rJMSF047N13+ CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
rJMFF039C20+ CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
JMFS149C06+ CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
                      ____________________________________________________________
consensus CTGATACCCGATGAAGGACTTTTAGATACTCTGGCTGATATATGTGTCAGGGCTGCATTT
 
. : . : . : . : . : . :
JMFS101D04- TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAAC
rJMSF047N13+ TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAACAAG
rJMFF039C20+ TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAACAAG
JMFS149C06+ TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAACAAG
                      ____________________________________________________________
consensus TTCAAGAGAGCTTTGGAGATCATTGCTTGCATGGAGGAGCATGGAATATCACCAAACAAG
 
. : . : . : . : . : . :
rJMSF047N13+ ACAAAGTATAAAAGGATTTACGTGGAGATGCACTCAAGGATGTTCACAAGCAAGCATGCT
rJMFF039C20+ ACAAAGTATAAAAGGATTTACGTGGAGATGCACTCAAGGATGTTCACAAGCAAGCATGCT
JMFS149C06+ ACAAAGTATAAAAGGATTTACGTGGAGATGCACTCAAGGATGTTCACAAGCAAGCATGCT
                      ____________________________________________________________
consensus ACAAAGTATAAAAGGATTTACGTGGAGATGCACTCAAGGATGTTCACAAGCAAGCATGCT
 
. : . : . : . : . : . :
rJMSF047N13+ TCAAGAGCCAGGCAGGATCGAAGAAGGGAGAGGAAAAGAGCAGCAGAGGCTTTCAAGTTT
rJMFF039C20+ TCAAGAGCCAGGCAGGATCGAAGAAGGGAGAGGAAAAGAGCAGCAGAGGCTTTCAAGTTT
JMFS149C06+ TCAAGAGCCAGGCAGGATCGAAGAAGGGAGAGGAAAAGAGCAGCAGAGGCTTTCAAGTTT
                      ____________________________________________________________
consensus TCAAGAGCCAGGCAGGATCGAAGAAGGGAGAGGAAAAGAGCAGCAGAGGCTTTCAAGTTT
 
. : . : . : . : . : . :
rJMSF047N13+ TGGTTGGGATTGCCCAATTCTTACTATGGAAGTGAATGGCGCCTTGATTCTGTATCCGAA
rJMFF039C20+ TGGTTGGGATTGCCCAATTCTTACTATGGAAGTGAATGGCGCCTTGATTCTGTATCCGAA
JMFS149C06+ TGGTTGGGATTGCCCAATTCTTACTATGGAAGTGAATGGCGCCTTGATTCTGTATCCGAA
                      ____________________________________________________________
consensus TGGTTGGGATTGCCCAATTCTTACTATGGAAGTGAATGGCGCCTTGATTCTGTATCCGAA
 
. : . : . : . : . : . :
rJMSF047N13+ GAAGATGAATATACTTCTGGCACTGCCTAAAGACATGCCACAAAATAGTAGTGTTGAGAA
rJMFF039C20+ GAAGATGAATATACTTCTGGCACTGCCTAAAGACATGCCACAAAATAGTAGTGTTGAGAA
JMFS149C06+ GAAGATGAATATACTTCTGGCACTGCCTAAAGACATGCCACAAAATAGTAGTGTTGAGAA
                      ____________________________________________________________
consensus GAAGATGAATATACTTCTGGCACTGCCTAAAGACATGCCACAAAATAGTAGTGTTGAGAA
 
. : . : . : . : . : . :
rJMSF047N13+ AAAGAGATGACNCTGAAAAATAAATTTATAAGATTGTACCATGATCATGTATCAAAT
rJMFF039C20+ AAAGAGATGACACTGAAAAATAAATTTATAAGATTGTACCATGATCATGTATCAAATTAA
JMFS149C06+ AAAGAGATGACACTGAAAAATAAATTTATAAGATTGTACCATGATCATGTATCAAATTAA
                      ____________________________________________________________
consensus AAAGAGATGACACTGAAAAATAAATTTATAAGATTGTACCATGATCATGTATCAAATTAA
 
. : . : . : . : . : . :
rJMFF039C20+ ATATATACAGGCCTTGAGTTCC
JMFS149C06+ ATATATACAGGCCTTGAGTTCCXXXXXXXXXXXXXXXXXXXXXXCTCAAGACTAGTTCTC
                      ____________________________________________________________
consensus ATATATACAGGCCTTGAGTTCCNNNNNNNNNNNNNNNNNNNNNNCTCAAGACTAGTTCTC