Contig 013181:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016O20Sequence605013181 (4)ref|XP_002277256.1|1e-90PREDICTED: protein kinase 2B, chloroplastic isoform X1 [Vitis vinifera] emb|CBI
JMFF041F18Sequence654013181 (4)ref|XP_002277256.1|3e-89PREDICTED: protein kinase 2B, chloroplastic isoform X1 [Vitis vinifera] emb|CBI602002660 (2)ref|XP_009762807.1|1e-23PREDICTED: protein kinase 2B, chloroplastic-like [Nicotiana sylvestris]
JMFS088E09Sequence361013181 (4)ref|XP_002277256.1|1e-49PREDICTED: protein kinase 2B, chloroplastic isoform X1 [Vitis vinifera] emb|CBI
JMFS146C08Sequence641013181 (4)ref|XP_002277256.1|1e-78PREDICTED: protein kinase 2B, chloroplastic isoform X1 [Vitis vinifera] emb|CBI

Alignment

This contig is upended


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JMFF016O20+                               GGCATGAACTCGTACACCAAGAGCCGGTTGTCACCATCCG
JMFF041F18+                                       CTCGTACACCAAGAGCCGGTTGTCACCATCCG
                      ____________________________________________________________
consensus                                 GGCATGAACTCGTACACCAAGAGCCGGTTGTCACCATCCG
 
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JMFF016O20+           AGGAGTATCCAATAAGTTTAACGAGGTTTGGATGATGAAGTTGCCCGAGATAATTAACTT
JMFF041F18+           AGGAGTATCCAATAAGTTTAACGAGGTTTGGATGATGAAGTTGCCCGAGATAATTAACTT
JMFS146C08+                              AACGAGGTTTGGATGATGAAGTTGCCCGAGATAATTAACTT
                      ____________________________________________________________
consensus             AGGAGTATCCAATAAGTTTAACGAGGTTTGGATGATGAAGTTGCCCGAGATAATTAACTT
 
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JMFF016O20+           CGGTCAGCCATTCTTTATGACCCTGAAAACCTTCCGGTTTCAACTTTTTCACCGCGATGA
JMFF041F18+           CGGTCAGCCATTCTTTATGACCCTGAAAACCTTCCGGTTTCAACTTTTTCACCGCGATGA
JMFS146C08+           CGGTCAGCCATTCTTTATGACCCTGAAAACCTTCCGGTTTCAACTTTTTCACCGCGATGA
                      ____________________________________________________________
consensus             CGGTCAGCCATTCTTTATGACCCTGAAAACCTTCCGGTTTCAACTTTTTCACCGCGATGA
 
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JMFF016O20+           CCATCCCGAATCCGGGTCTTGTAGGGGTAAGAGAATGCTCGTCAATCCATCCTTTGAAAA
JMFS088E09+                    ATCCGGGTCTTGTAGGGGTAAGAGAATGCTCGTCAATCCATCCTTTGAAAA
JMFF041F18+           CCATCCCGAATCCGGGTCTTGTAGGGGTAAGAGAATGCTCGTCAATCCATCCTTTGAAAA
JMFS146C08+           CCATCCCGAATCCGGGTCTTGTAGGGGTAAGAGAATGCTCGTCAATCCATCCTTTGAAAA
                      ____________________________________________________________
consensus             CCATCCCGAATCCGGGTCTTGTAGGGGTAAGAGAATGCTCGTCAATCCATCCTTTGAAAA
 
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JMFF016O20+           CATAACCGAACCCTCCTTCCCCTAGAAGACTATCGGGTCTAAAGTTTCGGGTCGCACTCT
JMFS088E09+           CATAACCGAACCCTCCTTCCCCTAGAAGACTATCGGGTCTAAAGTTTCGGGTCGCACTCT
JMFF041F18+           CATAACCGAACCCTCCTTCCCCTAGAAGACTATCGGGTCTAAAGTTTCGGGTCGCACTCT
JMFS146C08+           CATAACCGAACCCTCCTTCCCCTAGAAGACTATCGGGTCTAAAGTTTCGGGTCGCACTCT
                      ____________________________________________________________
consensus             CATAACCGAACCCTCCTTCCCCTAGAAGACTATCGGGTCTAAAGTTTCGGGTCGCACTCT
 
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JMFF016O20+           TGAGCTCGTGAAATGTGAAGGGTTTAACATTAGGGGACGGTAATATTTTGCCTTCAGATC
JMFS088E09+           TGAGCTCGTGAAATGTGAAGGGTTTAACATTAGGGGCCGGTAATATTTCGCCTTCAGATC
JMFF041F18+           TGAGCTCGTGAAATGTGAAGGGTTTAACATTAGGGGACGGTAATATTTCGCCTTCAGATC
JMFS146C08+           TGAGCTCGTGAAATGTGAAGGGTTTAACATTAGGGGACGGTAATATTTCGCCTTCAGATC
                      ____________________________________________________________
consensus             TGAGCTCGTGAAATGTGAAGGGTTTAACATTAGGGGACGGTAATATTTCGCCTTCAGATC
 
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JMFF016O20+           GCGGTGTAGGAAAGCTGTCCACACTGCTTCTTCTACTATAAGACGGAATACTTAAGGTAG
JMFS088E09+           GCGGTGTAGGAAAGCTGTCCACACTGCTTCTTCTACTATAAGACGGAATACTTAAGGTAG
JMFF041F18+           GCGGTGTAGGAAAGCTGTCCACACTGCTTCTTCTACTATAAGACGGAATACTTAAGGTAG
JMFS146C08+           GCGGTGTAGGAAAGCTGTCCACACTGCTTCTTCTACTATAAGACGGAATACTTAAGGTAG
                      ____________________________________________________________
consensus             GCGGTGTAGGAAAGCTGTCCACACTGCTTCTTCTACTATAAGACGGAATACTTAAGGTAG
 
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JMFF016O20+           AAGGAACAGAAAAGCTGCTCGCTTTGCTGGGAACTTTCGAGGCTTCAGAAGCAGAAGGGG
JMFS088E09+           AAGGAACAGAAAAGCTGCTCGCTTTGCTGGGAACTTTCGAGGCTTCAGAAGCAGAAGGGG
JMFF041F18+           AAGGAACAGAAAAGCTGCTCGCTTTGCTGGGAACTTTCGAGGCTTCAGAAGCAGAAGGGG
JMFS146C08+           AAGGAACAGAAAAGCTGCTCGCTTTGCTGGGAACTTTCGAGGCTTCAGAAGCAGAAGGGG
                      ____________________________________________________________
consensus             AAGGAACAGAAAAGCTGCTCGCTTTGCTGGGAACTTTCGAGGCTTCAGAAGCAGAAGGGG
 
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JMFF016O20+           CGTGGGAGCTCAGAGTGGCATCAACTCTCGCTGAAGAACCAAAGCAATTACCCATCAAGA
JMFS088E09+           CGTGGGAGCTCAGAGTGGCATCAACTCTCGCTGAAGAACCAAAGCAATTACCCATCAA  
JMFF041F18+           CGTGGGAGCTCAGAGTGGCATCAACTCTCGCTGAAGAACCAAAGCAATTACCCATCAAGA
JMFS146C08+           CGTGGGAGCTCAGAGTGGCATCAACTCTCGCTGAAGAACCAAAGCAATTACCCATCAAGA
                      ____________________________________________________________
consensus             CGTGGGAGCTCAGAGTGGCATCAACTCTCGCTGAAGAACCAAAGCAATTACCCATCAAGA
 
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JMFF016O20+           TAAACCAAATCCACCAACAAAAATCAGGGCTTCAAGGAGAAAAATAATAATACTACTAAA
JMFF041F18+           TAAACCAAATCCACCAACAAAAATCAGGGCTTCAAGGAGAAAAATAATAATACTACTAAA
JMFS146C08+           TAAACCAAATCCACCAACAAAAATCAGGGCTTCAAGGAGAAAAATAATAATACTACTAAA
                      ____________________________________________________________
consensus             TAAACCAAATCCACCAACAAAAATCAGGGCTTCAAGGAGAAAAATAATAATACTACTAAA
 
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JMFF016O20+           GATTGCAAGGAATCAAGGATCTTGC                                   
JMFF041F18+           GATTGCAAGGAATCAAGGATCTTGCTGGGGAAACGCCTGAAACTAGAGAATATAAGCATA
JMFS146C08+           GATTGCAAGGAATCAAGGATCTTGCTGGGGAAACGCCTGAAACTAGAGAATATAAGCATA
                      ____________________________________________________________
consensus             GATTGCAAGGAATCAAGGATCTTGCTGGGGAAACGCCTGAAACTAGAGAATATAAGCATA
 
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JMFF041F18+           TATACATAAATATCTAGGTGT                                       
JMFS146C08+           TATACATAAATATCTAGGTGTGAAGATAAGGAAGGAGTACTAGTCAGCTAGCTAGATTTC
                      ____________________________________________________________
consensus             TATACATAAATATCTAGGTGTGAAGATAAGGAAGGAGTACTAGTCAGCTAGCTAGATTTC