Contig 013168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006D05Sequence642013168 (4)emb|CDP15228.1|2e-128unnamed protein product [Coffea canephora]
JMFS127D10Sequence634013168 (4)emb|CDP15228.1|2e-120unnamed protein product [Coffea canephora]
JMSF008M09Sequence277013168 (4)ref|XP_009619498.1|5e-38PREDICTED: galactinol synthase 2 [Nicotiana tomentosiformis]696013168 (4)ref|XP_009792096.1|7e-83PREDICTED: galactinol synthase 2 [Nicotiana sylvestris] gb|AIE16185.1| galactino

Alignment

This contig is upended


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rJMSF008M09-                   AATGTTTTACTTAACCATCAAGATAATTACTCGCACCAGCAGTAAGTTCTT
                      ____________________________________________________________
consensus                      AATGTTTTACTTAACCATCAAGATAATTACTCGCACCAGCAGTAAGTTCTT
 
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rJMSF008M09-          TAATGGCAGATTGTTGATAAACATCGAGATGATTGATACGTTAAATTCTTCCCAACCGTT
                      ____________________________________________________________
consensus             TAATGGCAGATTGTTGATAAACATCGAGATGATTGATACGTTAAATTCTTCCCAACCGTT
 
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rJMSF008M09-          TGCAATTACCAAAAGCTCCGAAATATCAAGCAAAAACATACATTACGGCGTATATATATA
                      ____________________________________________________________
consensus             TGCAATTACCAAAAGCTCCGAAATATCAAGCAAAAACATACATTACGGCGTATATATATA
 
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rJMSF008M09-          TATACATACAAGGACCAGAGGCTGCTGATTACGCAGCAGATGGGGCGGCGATGTAACGAA
                      ____________________________________________________________
consensus             TATACATACAAGGACCAGAGGCTGCTGATTACGCAGCAGATGGGGCGGCGATGTAACGAA
 
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rJMSF008M09-          CAACGCCGGTCTTGGGGAGCACCACCGCCTTGAACTTGTCATCTTCAACCTCAAGCCCGC
                      ____________________________________________________________
consensus             CAACGCCGGTCTTGGGGAGCACCACCGCCTTGAACTTGTCATCTTCAACCTCAAGCCCGC
 
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rJMSF008M09-          CACCGCCAACTGCCGACGCCGGCGCCGGCGTATTCTTGTAATCCAATGACTCGTCGTTGT
                      ____________________________________________________________
consensus             CACCGCCAACTGCCGACGCCGGCGCCGGCGTATTCTTGTAATCCAATGACTCGTCGTTGT
 
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rJMSF008M09-          ATACGTCCCACCACTTCTTGACCAGCATCTTGATGTCTTCCCTGTCCATGTTTGCCTCTT
                      ____________________________________________________________
consensus             ATACGTCCCACCACTTCTTGACCAGCATCTTGATGTCTTCCCTGTCCATGTTTGCCTCTT
 
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rJMSF008M09-          TTCCGGTGAACCTCCACGGCTTCGACCCCGCCGCGCAGTAGTGAACCACCTTCACTTTCT
JMFN006D05+                                             GCAGTAGTGAGCCACCTTCACTTTCT
                      ____________________________________________________________
consensus             TTCCGGTGAACCTCCACGGCTTCGACCCCGCCGCGCAGTAGTGAGCCACCTTCACTTTCT
 
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rJMSF008M09-          CCAGCTCCACATTCTCCGGGTGGCGCCACAGCATGGCTAGTACCAGGTTGTACACATTCG
JMFN006D05+           CCAGCTCCACATTCTCCGGGTGGCGCCACAGCATGGCTAGTACCAGGTTGTACACATTTG
                      ____________________________________________________________
consensus             CCAGCTCCACATTCTCCGGGTGGCGCCACAGCATGGCTAGTACCAGGTTGTACACATTTG
 
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rJMSF008M09-          GGATCGGCTTATAAACGTTTCTGAAAAACATGTTCAAGAAATCTTGTTCGGCGAAAGGAG
JMFN006D05+           GGATTGGCTTGTAAACGTTTCTGAAAAACATGTTCAAGAAATCTTGCTCGGCGAAAGGAG
                      ____________________________________________________________
consensus             GGATTGGCTTGTAAACGTTTCTGAAAAACATGTTCAAGAAATCTTGTTCGGCGAAAGGAG
 
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rJMSF008M09-          TGGGAGGGGTGATTTTAAGGGTGTTCAAAAGGTCATCATAAGTGGAAAGACTGGGCTCAA
JMFN006D05+           TGGGAGGGGTGAGTTGAAGGGTGTTCAAAAGGTCATCGTAAGTGGAAAGATTGGGCTCAA
JMFS127D10+                                     AAAAGGTCATCGTAAGTGGAAAGATTGGGCTCAA
                      ____________________________________________________________
consensus             TGGGAGGGGTGATTTTAAGGGTGTTCAAAAGGTCATCGTAAGTGGAAAGATTGGGCTCAA
 
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rJMSF008M09-          AGACAAACATTCCGGCGTTGAAGTAAAGCGGCGGGCGGGGGCCGA               
JMFN006D05+           ACACGAACATTCCGGCGTTGAAGTAAAGCGGCGGGCGGGGGCCGAGCTCCGCCGCCGGCC
JMFS127D10+           ACACGAACATTCCGGCGTTGAAGTAAAGCGGCGGGCGGGGGCCGAGCTCCGCCGCCGGCC
                      ____________________________________________________________
consensus             ACACGAACATTCCGGCGTTGAAGTAAAGCGGCGGGCGGGGGCCGAGCTCCGCCGCCGGCC
 
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JMFN006D05+           ACTGGACCTTCTCCGGGCACTGTTGGCAGTATCCGATGTTGTACTGCGGGGTGTGAGTCC
JMFS127D10+           ACTGGACCTTCTCCGGGCACTGTTGGCAGTATCCGATGTTGTACTGCGGGGTGTGAGTCC
                      ____________________________________________________________
consensus             ACTGGACCTTCTCCGGGCACTGTTGGCAGTATCCGATGTTGTACTGCGGGGTGTGAGTCC
 
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JMFN006D05+           ATGTCTTCTCGCAGAAGCAGTCCATGACGGCGTAAAAGTAGCCGTCCGGCAGGTCAAACA
JMFS127D10+           ATGTCTTCTCGCAGAAGCAGTCCATGACGGCGTAAAAGTAGCCGTCCGGCAGGTCAAACA
                      ____________________________________________________________
consensus             ATGTCTTCTCGCAGAAGCAGTCCATGACGGCGTAAAAGTAGCCGTCCGGCAGGTCAAACA
 
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JMFN006D05+           GGTGGTCAATGTTCTCAAACACCTGAATATCCCCATCCAAGTATATCATCTTGCTATACT
JMFS127D10+           GGTGGTCAATGTTCTCAAACACCTGAATATCCCCATCCAAGTATATCATCTTGCTATACT
                      ____________________________________________________________
consensus             GGTGGTCAATGTTCTCAAACACCTGAATATCCCCATCCAAGTATATCATCTTGCTATACT
 
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JMFN006D05+           CCACAAACTCCCAGATAGGGAGCTTGGAGTAGGTGATGACGTAGTACGCCATAGCAAACT
JMFS127D10+           CCACAAACTCCCAGATAGGGAGCTTGGAGTAGGTGATGACGTAGTACGCCATAGCAAACT
                      ____________________________________________________________
consensus             CCACAAACTCCCAGATAGGGAGCTTGGAGTAGGTGATGACGTAGTACGCCATAGCAAACT
 
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JMFN006D05+           GGGTGTCGTTCTCCGGCGGGTAAACCGGCTGAATTTCACGGACGATGCAGCCCTGGTTCA
JMSF008M09+                      TCCGGCGGGTAAACCGGCTGAATTTCACGGACGATGCAGCCCTGGTTCA
JMFS127D10+           GGGTGTCGTTCTCCGGCGGGTAAACCGGCTGAATTTCACGGACGATGCAGCCCTGGTTCA
                      ____________________________________________________________
consensus             GGGTGTCGTTCTCCGGCGGGTAAACCGGCTGAATTTCACGGACGATGCAGCCCTGGTTCA
 
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JMFN006D05+           CCAGTAACCGGCGGTGTTCCTCCGGGACATCCGGCAAGACCGCCACCACGAGCGGGAAAG
JMSF008M09+           CCAGTAACCGGCGGTGCTCCTCCGGGACATCCGGCAAGACCGCCACGACGAGCGGGTAAG
JMFS127D10+           CCAGTAACCGGCGGTGTTCCTCCGGGACATCCGGCAAGACCGCCACCACGAGCGGGTAAG
                      ____________________________________________________________
consensus             CCAGTAACCGGCGGTGTTCCTCCGGGACATCCGGCAAGACCGCCACCACGAGCGGGTAAG
 
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JMFN006D05+           CAGAGTTGACCTTCCG                                            
JMSF008M09+           AAGAGTTGACCTTCCGCAGCCCCTTGGCCAGCCCCACCACCCCTTTCACGTAATCCCCAT
JMFS127D10+           CAGAGTTGACCTTCCGCAGCCCCTTGGCCAGCGCCACCACCCCTTTCACGTAATCCCCAT
                      ____________________________________________________________
consensus             CAGAGTTGACCTTCCGCAGCCCCTTGGCCAGCGCCACCACCCCTTTCACGTAATCCCCAT
 
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JMSF008M09+           TGCCGGCCAAGAACGTCACGTACGCTCTGCTACACAGGCTAGCAGCCTTCACTACTAAAC
JMFS127D10+           TGCCGGCCAAGAACGTCACGTACGCTCTGCTACACAGGCTAGCAGCGTTCACTACTAAAC
                      ____________________________________________________________
consensus             TGCCGGCCAAGAACGTCACGTACGCTCTGCTACACAGGCTAGCAGCGTTCACTACTAAAC
 
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JMSF008M09+           CCCCACC                                                     
JMFS127D10+           CGCCACCATCCTCCATTGCATTAGCAGAAGCACTAACGATCTCCGGAGCCATTTTTTCCC
                      ____________________________________________________________
consensus             CGCCACCATCCTCCATTGCATTAGCAGAAGCACTAACGATCTCCGGAGCCATTTTTTCCC