Contig 013167:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS003D11Sequence567013167 (4)ref|XP_009627218.1|8e-32PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana tomentosiformis
JMFS127B10Sequence626013167 (4)ref|XP_009627218.1|2e-33PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana tomentosiformis
JMFS127G06Sequence615013167 (4)ref|XP_009771080.1|4e-38PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref
JMFS155E09Sequence615013167 (4)ref|XP_009771080.1|4e-39PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref

Alignment

This contig is upended


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JMFS155E09+                                   AGTCCTGTGCCGGTGGTGTGATGNCTGTTTATATTT
JMFS127G06+                                                                   ATTT
                      ____________________________________________________________
consensus                                     AGTCCTGTGCCGGTGGTGTGATGNCTGTTTATATTT
 
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JMFS155E09+           ACTCNAGCGTTATTCAGCGAAAGAATATTGGAGGGCCCGTATCGCCTTTCCTCGGGGATT
JMFS127G06+           ACTCNAGCGTTATTCAGCGAAAGAATATTGGAGGGCCCGTATCGCCTTTCCTCGGGGATT
                      ____________________________________________________________
consensus             ACTCNAGCGTTATTCAGCGAAAGAATATTGGAGGGCCCGTATCGCCTTTCCTCGGGGATT
 
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JMFS155E09+           CGAGGTGGTCCAGGAAAAGCACCCATAGGAGACGGCCAATGATGTTCGGGCTTCGGGTCG
JMFS127G06+           CGAGGTGGTCCAGGAAAAGCACCCATAGGAGACGGCCAATGATGTTCGGGCTTCGGGTCG
JMFS003D11+                    CCAGGAAAAGCACCCATAGGAGACGGCCAATGATGTTCGGGCTTCGGGTCG
JMFS127B10+                    CCAGGAAAAGCACCCATAGGAGACGGCCAATGATGTTCGGGCTTCGGGTCG
                      ____________________________________________________________
consensus             CGAGGTGGTCCAGGAAAAGCACCCATAGGAGACGGCCAATGATGTTCGGGCTTCGGGTCG
 
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JMFS155E09+           TTTTCACTAACCTGATTTTGTCCAATACTCGAGCTGCTTTCTCCTAAACTCCAGCCATTC
JMFS127G06+           TTTTCACTAACCTGATTTTGTCCAATACTCGAGCTGCTTTCTCCTAAACTCCAGCCATTC
JMFS003D11+           TTTTCACTAACCTGATTTTGTCCAATACTCGAGCTGCTTTCTCCTAAACTCCAGCCATTC
JMFS127B10+           TTTTCACTAACCTGATTTTGTCCAATACTCGAGCTGCTTTCTCCTAAACTCCAGCCATTC
                      ____________________________________________________________
consensus             TTTTCACTAACCTGATTTTGTCCAATACTCGAGCTGCTTTCTCCTAAACTCCAGCCATTC
 
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JMFS155E09+           AAGTTCTGCCTCTCTTGACTTGCAGAACCGATATATCCAGAGGCAGTTTCATTAGAAGAA
JMFS127G06+           AAGTTCTGCCTCTCTTGACTTGCAGAACCGATATATCCAGAGGCAGTTTCATTAGAAGAA
JMFS003D11+           AAGTTCTGCCTCTCTTGACTTGCAGAACCGATATATCCAGAGGCAGTTTCATTAGAAGAA
JMFS127B10+           AAGTTCTGCCTCTCTTGACTTGCAGAACCGATATATCCAGAGGCAGTTTCATTAGAAGAA
                      ____________________________________________________________
consensus             AAGTTCTGCCTCTCTTGACTTGCAGAACCGATATATCCAGAGGCAGTTTCATTAGAAGAA
 
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JMFS155E09+           ACCATATAATCTGGTATCAGATTCTGCGTTGAATTTCGCAAATTATTCCAGCATATCTGC
JMFS127G06+           ACCATATAATCTGGTATCAGATTCTGCGTTGAATTTCGCAAATTATTCCAGCATATCTGC
JMFS003D11+           ACCATATAATCTGGTATCAGATTCTGCGTTGAATTTCGCAAATTATTCCAGCATATCTGC
JMFS127B10+           ACCATATAATCTGGTATCAGATTCTGCGTTGAATTTCGCAAATTATTCCAGCATATCTGC
                      ____________________________________________________________
consensus             ACCATATAATCTGGTATCAGATTCTGCGTTGAATTTCGCAAATTATTCCAGCATATCTGC
 
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JMFS155E09+           GGTTCTATGCCAGCATCGCCTGAAGTAGACCCGTGATTAAAGCCTAAAGTTTCAGGTAAG
JMFS127G06+           GGTTCTATGCCAGCATCGCCTGAAGTAGACCCGTGATTAAAGCCTAAAGTTTCAGGTAAG
JMFS003D11+           GGTTCTATGCCAGCATCGCCTGAAGTAGACCCGTGATTAAAGCCTAAAGTTTCAGGTAAG
JMFS127B10+           GGTTCTATGCCAGCATCGCCTGAAGTAGACCCGTGATTAAAGCCTAAAGTTTCAGGTAAG
                      ____________________________________________________________
consensus             GGTTCTATGCCAGCATCGCCTGAAGTAGACCCGTGATTAAAGCCTAAAGTTTCAGGTAAG
 
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JMFS155E09+           GAACCAATAGCACTCTTTTGCCCTTGCATTGGGGCTAGAATGTACTTTATTCAAAGGAAT
JMFS127G06+           GAACCAATAGCACTCTTTTGCCCTTGCATTGGGGCTAGAATGTACTTTATTCAAAGGAAT
JMFS003D11+           GAACCAATAGCACTCTTTTGCCCTTGCATTGGGGCTAGAATGTACTTTATTCAAAGGAAT
JMFS127B10+           GAACCAATAGCACTCTTTTGCCCTTGCATTGGGGCTAGAATGTACTTTATTCAAAGGAAT
                      ____________________________________________________________
consensus             GAACCAATAGCACTCTTTTGCCCTTGCATTGGGGCTAGAATGTACTTTATTCAAAGGAAT
 
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JMFS155E09+           TGGGAAGTATATTTTGCGCACAATAGAGCCTCGCCCCCTCTCCCTTTAGCAGACC     
JMFS127G06+           TGGGAAGTATATTTTGCGCACAATAGAGCCTCGCCCCCTCTCCCTTTAGCAGACC     
JMFS003D11+           TGGGAAGTATATTTTGCGCACAATAGAGCCTCGCCCCCTCTCCCTTTAGCAGACCGGTCA
JMFS127B10+           TGGGAAGTATATTTTGCGCACAATAGAGCCTCGCCCCCTCTCCCTTTAGCAGACCGGTCA
                      ____________________________________________________________
consensus             TGGGAAGTATATTTTGCGCACAATAGAGCCTCGCCCCCTCTCCCTTTAGCAGACCGGTCA
 
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JMFS003D11+           AAAGCTACAAAATTAAGCGATAGATCTAGAATCAAGACCTGAAATGCAAACCAAGCGTTA
JMFS127B10+           AAAGCTACAAAATTAAGCGATAGATCTAGAATCAAGACCTGAAATGCAAACCAAGCGTTA
                      ____________________________________________________________
consensus             AAAGCTACAAAATTAAGCGATAGATCTAGAATCAAGACCTGAAATGCAAACCAAGCGTTA
 
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JMFS003D11+           TGAAGATTCAATCTGGAGAAAATGATCAAACATTCAATCCAAACTCCATCCCGCTTAACA
JMFS127B10+           TGAAGATTCAATCTGGAGAAAATGATCAAACATTCAATCCAAACTCCATCCCGCTTAACA
                      ____________________________________________________________
consensus             TGAAGATTCAATCTGGAGAAAATGATCAAACATTCAATCCAAACTCCATCCCGCTTAACA
 
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JMFS003D11+           GAAGGGAGAAGAGATAGAAAGAAGAGAGGAAGAGA                         
JMFS127B10+           GAAGGGAGAAGAGATAGAAAGAAGAGAGGAAGAGAGGGGTTTGGAGAGGAGATGAGATGA
                      ____________________________________________________________
consensus             GAAGGGAGAAGAGATAGAAAGAAGAGAGGAAGAGAGGGGTTTGGAGAGGAGATGAGATGA