Contig 013163:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN036O08Sequence568013163 (5)
JMFS120F05Sequence581013163 (5)
JMFS122E05Sequence575013163 (5)ref|XP_006429957.1|4e-72hypothetical protein CICLE_v100110482mg, partial [Citrus clementina] ref|XP_0064
JMFS141F10Sequence606013163 (5)
JMFS152B09Sequence626013163 (5)ref|XP_004231313.1|7e-61PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Solanum l

Alignment

This contig is upended


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JMFS141F10-                                                           GAACTAGTCTTG
                      ____________________________________________________________
consensus                                                             GAACTAGTCTTG
 
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JMFN036O08+                                  AAATCAACAAGTCTAAAATTACTTAAATAGCAAAGTC
JMFS141F10-           AGXXXXXXXXXXXXXXXXXXXXXAAATCAACAAGTCTAAAATTACTTAAATAGCAAAGTC
JMFS120F05-                                  AAATCAACAAGTCTAAAATTACTTAAATAGCAAAGTC
                      ____________________________________________________________
consensus             AGNNNNNNNNNNNNNNNNNNNNNAAATCAACAAGTCTAAAATTACTTAAATAGCAAAGTC
 
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JMFN036O08+           TTTTAAGTCACACTTTTAGTTGACAGAACAAAAGCAAAAGTTCTGATCTGCAGAAAGGTA
JMFS141F10-           TTTTAAGTCACACTTTTAGTTGACAGAACAAAAGCAAAAGTTCTGATCTGCAGAAAGGTA
JMFS120F05-           TTTTAAGTCACACTTTTAGTTGACAGAACAAAAGCAAAAGTTCTGATCTGCAGAAAGGTA
                      ____________________________________________________________
consensus             TTTTAAGTCACACTTTTAGTTGACAGAACAAAAGCAAAAGTTCTGATCTGCAGAAAGGTA
 
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JMFN036O08+           AATGATGAGAATAACAAAATGAAACAAAAAATAATCAAATTTGTTTGCTTTGGGACTGGC
JMFS141F10-           AATGATGAGAATAACAAAATGAAACAAAAAATAATCAAATTTGTTTGCTTTGGGACTGGC
JMFS120F05-           AATGATGAGAATAACAAAATGAAACAAAAAATAATCAAATTTGTTTGCTTTGGGACTGGC
                      ____________________________________________________________
consensus             AATGATGAGAATAACAAAATGAAACAAAAAATAATCAAATTTGTTTGCTTTGGGACTGGC
 
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JMFN036O08+           AACAATGCAGAAACAGAAGCTTCTTCTCTCAATGGCCAAAATTAGCTTCTCTAGGAGCGA
JMFS141F10-           AACAATGCAGAAACAGAAGCTTCTTCTCTCAATGGCCAAAATTAGCTTCTCTAGGAGCGA
JMFS120F05-           AACAATGCAGAAACAGAAGCTTCTTCTCTCAATGGCCAAAATTAGCTTCTCTAGGAGCGA
                      ____________________________________________________________
consensus             AACAATGCAGAAACAGAAGCTTCTTCTCTCAATGGCCAAAATTAGCTTCTCTAGGAGCGA
 
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JMFN036O08+           AGTCCCCTGTTAAGACTAACCATCCGACCTGATGTATCGCCGCCTTGGCTTCCCCTGGCT
JMFS141F10-           AGTCCCCTGTTAAGACTAACCATCCGACCTGATGTATCGCCGCCTTGGCTTCCCCTGGCT
JMFS120F05-           AGTCCCCTGTTAAGACTAACCATCCGACCTGATGTATCGCCGCCTTGGCTTCCCCTGGCT
                      ____________________________________________________________
consensus             AGTCCCCTGTTAAGACTAACCATCCGACCTGATGTATCGCCGCCTTGGCTTCCCCTGGCT
 
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JMFN036O08+           GAGGACCCACCCTGGTACCGTGATCCTTGAATGCCTGAATAACCACCAGAGGATCGTGCC
JMFS141F10-           GAGGACCCACCCTGGTACCGTGATCCTTGACTGCCTGAATAACCACCAGAGGATCGTGCC
JMFS120F05-           GAGGACCCACCCTGGTACCGTGATCCTTGACTGCCTGAATAACCACCAGAGGATCGTGCC
                      ____________________________________________________________
consensus             GAGGACCCACCCTGGTACCGTGATCCTTGACTGCCTGAATAACCACCAGAGGATCGTGCC
 
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JMFN036O08+           TGGTTGGATCGATGATCCCTGCCAGACGATTGCCCAGATCCTAACGCTCTATTATACCCA
JMFS141F10-           TGGTTGGATCGATGATCCCTGCCAGACGATTGCCCAGATCCTAACGCTCTATTATACCCA
JMFS120F05-           TGGTTGGATCGATGATCCCTGCCAGACGATTGCCCAGATCCTAACGCTCTATTATACCCA
JMFS152B09+                                                                    CCA
JMFS122E05+                                    ACGATTGCCCAGATCCTAACGCTCTATTATACCCA
                      ____________________________________________________________
consensus             TGGTTGGATCGATGATCCCTGCCAGACGATTGCCCAGATCCTAACGCTCTATTATACCCA
 
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JMFN036O08+           CCTCTGCCACCTCCAGTGCCACCTTGCCTGCCTTGTGAGAAGAACTTCTGCCACTTTCCG
JMFS141F10-           CCTCTGCCACCTCCAGTGCCACCTTGCCTGCCTTGTGAGAAGAACTCCTGCCACTTTCCG
JMFS120F05-           CCTCTGCCACCTCCAGTGCCACCTTGCCTGCCTTGTGAGAAGAACTCCTGCCACTTTCCG
JMFS152B09+           CCTCTGCCACCTCTGGTGCTTCCCTGCCTGCCTTGCGAAAAGAACTCCGGCCACTTTCCC
JMFS122E05+           CCTCTGCCACCTCCAGTGCCACTTGNCCTGCCTTGTGAGAAGAACTCCTGCCACTTTCCG
                      ____________________________________________________________
consensus             CCTCTGCCACCTCCAGTGCCACCTTGCCTGCCTTGTGAGAAGAACTCCTGCCACTTTCCG
 
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JMFN036O08+           CCACCACCACCACCACCAGCTGCACCATAATCTTGGCCATCCCTGCGTCTCAAGGGTGGG
JMFS141F10-           CCACCACCACCACCACCAGCTGCACCATAATCTTGGCCATCCCTGCGTCTCAAGGGTGGG
JMFS120F05-           CCACCACCACCACCACCAGCTGCACCATAATCTTGGCCATCCCTGCGTCTCAAGGGTGGG
JMFS152B09+           CCAGTACCACCACTAGCAGCTGCAGCATAATCTTGGCCATCCCTGCGTCTCAAGGGAGGG
JMFS122E05+           CCACCACCACCACCACCAGNTGCACCATAATCTTGGCCATCCCTGCGTCTCAAGGGTGGG
                      ____________________________________________________________
consensus             CCACCACCACCACCACCAGCTGCACCATAATCTTGGCCATCCCTGCGTCTCAAGGGTGGG
 
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JMFN036O08+           CCATCCAATCCACCACCAATCCTCGACTCTAGTGC                         
JMFS141F10-           CCATCCAATCCACCACCAATCCTCGACTCTAGTGCTCTGTCATTACTTTCTGC       
JMFS120F05-           CCATCCAATCCACCACCAATCCTCGACTCTAGTGCTCTGTCATTACTTTCTGCAAGAATT
JMFS152B09+           CCATCCAATCCACCGCCAATCTTTGCCTCGACTGCTCTGTCATTACTTTCTGCGAGAATT
JMFS122E05+           CCATCCAATCCACCACCAATCCTCGACTCTAGTGCTCTGTCATTACTTTCTGCAAGAATT
                      ____________________________________________________________
consensus             CCATCCAATCCACCACCAATCCTCGACTCTAGTGCTCTGTCATTACTTTCTGCAAGAATT
 
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JMFS152B09+           GCTAGCTTCTCTGTCAGCTGGAATGCCAAAGCCTGTAGTCTTGTATGTTCAACATCATGG
JMFS122E05+           CCTAGCTTCTCTGTCAGCTGGAATGCCAAAGCCTGCAGTCTTGTATGCTCAACATCATGG
                      ____________________________________________________________
consensus             GCTAGCTTCTCTGTCAGCTGGAATGCCAAAGCCTGTAGTCTTGTATGTTCAACATCATGG
 
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JMFS152B09+           AAGACCACACACCGAGTCGGTTGATCCCAGCTTGCATGAAGCTCGTCAGTGATCATGAGT
JMFS122E05+           AAGACCACACACCGAGTTGGTTGATCCCAGCTCGCATGAAGTTCATCAGTGATCATAAGT
                      ____________________________________________________________
consensus             AAGACCACACACCGAGTTGGTTGATCCCAGCTTGCATGAAGTTCGTCAGTGATCATGAGT
 
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JMFS152B09+           TTGCTCACGATGCAATGAGTTTGGGAATCAGAAAGTTCAAACATCTTGGCAAGCAGATCC
JMFS122E05+           TTGCTCACAATGCAATGAGTTTGGGAGTCCGAGAGTTCAAACATCTTGGCAAGTTGATCC
                      ____________________________________________________________
consensus             TTGCTCACGATGCAATGAGTTTGGGAGTCCGAGAGTTCAAACATCTTGGCAAGTTGATCC
 
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JMFS152B09+           AGGCTAAGAGAGTTATAAGAGGAAGAGTAAGTGAAAAGATAAGTCCTCAAAGCCTCTTCC
JMFS122E05+           AGGCCAAGAGAGTTATAAGAGGAGGAATAAGTGAAAAGATACGTCCTCAAGGCCTCTTCC
                      ____________________________________________________________
consensus             AGGCTAAGAGAGTTATAAGAGGAGGAGTAAGTGAAAAGATACGTCCTCAAGGCCTCTTCC
 
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JMFS152B09+           TTGATTTTCGCCCTAACCATTTCAAGAACATTGTCTTTATTCCGAAGCAGCCTCCAAATG
JMFS122E05+           TTGATTTTTGCCCTAACCATTTCAACAACAGTGTCTTTATTCCGAAGCAGCCTCCAAACA
                      ____________________________________________________________
consensus             TTGATTTTTGCCCTAACCATTTCAAGAACATTGTCTTTATTCCGAAGCAGCCTCCAAATG
 
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JMFS152B09+           TCAAGGGAGTTAATAATGTCAAAGGCCTTTTTGAAATCTCCCTG                
JMFS122E05+           TCAAGGGAGTTAATAACATCAAAGGCCTTTTTGAAATCTCCCTGCCGTAGGGCTCTTGTA
                      ____________________________________________________________
consensus             TCAAGGGAGTTAATAATGTCAAAGGCCTTTTTGAAATCTCCCTGCCGTAGGGCTCTTGTA