Contig 013147:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS098E05Sequence621013147 (2)ref|XP_009598989.1|1e-103PREDICTED: coatomer subunit alpha-1-like [Nicotiana tomentosiformis]
JMSF027B11Sequence604009115 (5)ref|XP_011028654.1|1e-101PREDICTED: coatomer subunit alpha-1 [Populus euphratica]732013147 (2)ref|XP_009794496.1|2e-131PREDICTED: coatomer subunit alpha-1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF027B11+                 GTCTTCAATTTTTCACTGTTGGAAGAGAAACTTAAAGCCGGTTACAAATTGAC
                      ____________________________________________________________
consensus                    GTCTTCAATTTTTCACTGTTGGAAGAGAAACTTAAAGCCGGTTACAAATTGAC
 
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rJMSF027B11+          AACGCAAGGGAAATTCGCTGAGGCTCTTCGAACTTTCCAGGGCATCCTCCATACCATTCC
                      ____________________________________________________________
consensus             AACGCAAGGGAAATTCGCTGAGGCTCTTCGAACTTTCCAGGGCATCCTCCATACCATTCC
 
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rJMSF027B11+          CCTGATTGTTGTTGAATCACGACGAGAGGTGGATGAAGTCAAGGAACTGGTAATAATTGT
JMFS098E05-                                                      GAACTAGTAATAATTGT
                      ____________________________________________________________
consensus             CCTGATTGTTGTTGAATCACGACGAGAGGTGGATGAAGTCAAGGAACTGGTAATAATTGT
 
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rJMSF027B11+          GAAGGAGTATGTTGTGGGTTTGCAAATGGAAATCAAGAGAAAGGAAATGAAGGACAACCC
JMFS098E05-           GAAGGAGTATGTTGTGGGTTTGCAAATGGAAATCAAGAGAAAGGAAATGAAGGACAACCC
                      ____________________________________________________________
consensus             GAAGGAGTATGTTGTGGGTTTGCAAATGGAAATCAAGAGAAAGGAAATGAAGGACAACCC
 
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rJMSF027B11+          TACTCGTCAGCAGGAATTGGCAGCCTACTTCACCCACTGTAACCTTCAGACTCCCCACTT
JMFS098E05-           TACTCGTCAGCAGGAATTGGCAGCCTACTTCACCCACTGTAACCTTCAGACTCCCCACTT
                      ____________________________________________________________
consensus             TACTCGTCAGCAGGAATTGGCAGCCTACTTCACCCACTGTAACCTTCAGACTCCCCACTT
 
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rJMSF027B11+          GAGACTCGCATTGCAAAATGCCATGACTGTGTGCTACAAGGCTGGTAACATGATCACAGC
JMFS098E05-           GAGACTCGCATTGCAAAATGCCATGACTGTGTGCTACAAGGCTGGTAACATGATCACAGC
                      ____________________________________________________________
consensus             GAGACTCGCATTGCAAAATGCCATGACTGTGTGCTACAAGGCTGGTAACATGATCACAGC
 
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rJMSF027B11+          TGCCAACTTTGCTAGGCGACTCTTGGAGACCAACCCAACCGTCGAAAGCCAGGCCAAGTT
JMFS098E05-           TGCCAACTTTGCTAGGCGACTCTTGGAGACCAACCCAACCGTCGAAAGCCAGGCCAAGTT
                      ____________________________________________________________
consensus             TGCCAACTTTGCTAGGCGACTCTTGGAGACCAACCCAACCGTCGAAAGCCAGGCCAAGTT
 
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rJMSF027B11+          AGCACGGCAAGTTCTCCAGGCTGCAGAGAAAAATATGCGCGATACTGCACAGCTGAATTA
JMFS098E05-           AGCACGGCAAGTTCTCCAGGCTGCAGAGAAAAATATGCGCGATACTGCACAGCTGAATTA
                      ____________________________________________________________
consensus             AGCACGGCAAGTTCTCCAGGCTGCAGAGAAAAATATGCGCGATACTGCACAGCTGAATTA
 
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rJMSF027B11+          TGACTTCAGAAATCCTTTCGTCACTTGTGGCGCAACCTATGTCCCTATCTACCGTGGTCA
JMFS098E05-           TGACTTCAGAAATCCTTTCGTCACTTGTGGCGCAACCTATGTCCCTATCTACCGTGGTCA
                      ____________________________________________________________
consensus             TGACTTCAGAAATCCTTTCGTCACTTGTGGCGCAACCTATGTCCCTATCTACCGTGGTCA
 
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rJMSF027B11+          AAAAGACGTCACTTGCCCTTACTGCTGTACTCATTTTGTTCCATCCCAAGAGGGGCAGCT
JMFS098E05-           AAAAGACGTCACTTGCCCTTACTGCTGTACTCATTTTGTTCCATCCCAAGAGGGGCAGCT
                      ____________________________________________________________
consensus             AAAAGACGTCACTTGCCCTTACTGCTGTACTCATTTTGTTCCATCCCAAGAGGGGCAGCT
 
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rJMSF027B11+          TTGTACCGTTTGTGACCTTGCAGTGGTCGGAGCAGATGCATCAGGTTTACTTTGTTCTCC
JMFS098E05-           TTGTACCGTTTGTGACCTTGCAGTGGTCGGAGCAGATGCATCAGGTTTACTTTGTTCTCC
                      ____________________________________________________________
consensus             TTGTACCGTTTGTGACCTTGCAGTGGTCGGAGCAGATGCATCAGGTTTACTTTGTTCTCC
 
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rJMSF027B11+          AGCCCAGACCAGATAAGTGCAGCTTTTACTCAATTGTATTGCTTATACAAATCATTCAGC
JMFS098E05-           AGCCCAGACCAGATAAGTGCAGCTTTTACTCAATTGTATTGCTTATACAAATCATTCAGC
                      ____________________________________________________________
consensus             AGCCCAGACCAGATAAGTGCAGCTTTTACTCAATTGTATTGCTTATACAAATCATTCAGC
 
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rJMSF027B11+          TGTTTCCTACTCTACAATT                                         
JMFS098E05-           TGTTTCCTACTCTACAATTAGAATCTAGGAGAACATGAAAGGATGAGTTNTTTCTTTCTT
                      ____________________________________________________________
consensus             TGTTTCCTACTCTACAATTAGAATCTAGGAGAACATGAAAGGATGAGTTNTTTCTTTCTT