Contig 013144:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS084E05Sequence599013144 (8)ref|XP_009629145.1|1e-08PREDICTED: chaperone protein ClpD, chloroplastic isoform X4 [Nicotiana tomentos
JMFS095G02Sequence604013144 (8)ref|XP_009629144.1|6e-08PREDICTED: chaperone protein ClpD, chloroplastic isoform X3 [Nicotiana tomentos
JMFS104H09Sequence615013144 (8)ref|XP_009792236.1|3e-23PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Nicotiana sylvestr
JMFS112E04Sequence606013144 (8)ref|XP_009629145.1|1e-08PREDICTED: chaperone protein ClpD, chloroplastic isoform X4 [Nicotiana tomentos
JMFS137D12Sequence620013144 (8)ref|XP_009792236.1|4e-21PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Nicotiana sylvestr
JMFS138D07Sequence614013144 (8)ref|XP_009792236.1|3e-23PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Nicotiana sylvestr
JMFS147F06Sequence623013144 (8)ref|XP_009792235.1|3e-18PREDICTED: chaperone protein ClpD, chloroplastic isoform X1 [Nicotiana sylvestr
JMSF030P16Sequence639013144 (8)ref|XP_009792236.1|3e-26PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Nicotiana sylvestr765008417 (3)ref|XP_010318683.1|1e-116PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Solanum lycopersic

Alignment

This contig is upended


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JMFS138D07+                                             GCGATCAGCCCTAGCAAAAGGTGCTC
JMFS104H09+                                             GCGATCAGCCCTAGCAAAAGGTGCTC
JMSF030P16+                               AGCCGCGATCCTCTGCGATCAGCCCTAGCAAAAGGTGCTC
JMFS137D12+                                                        TAGCAAAAGGTGCTC
JMFS147F06+                                                                   GCTC
                      ____________________________________________________________
consensus                                 AGCCGCGATCCTCTGCGATCAGCCCTAGCAAAAGGTGCTC
 
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JMFS138D07+           CGTAAACACCGTGTCTTTCCCCAACGCCTTGGCTTCCTTCTGGGAGGTCACCACCGCTTT
JMFS104H09+           CGTAAACACCGTGTCTTTCCCCAACGCCTTGGCTTCCTTCTGGGAGGTCACCACCGCTTT
JMSF030P16+           CGTAAACACCGTGTCTTTCCCCAACGCCTTGGCTTCCTTCTGGGAGGTCACCACCGCTTT
JMFS137D12+           CGTAAACACCGTGTCTTTCCCCAACGCCTTGGCTTCCTTCTGGGAGGTCACCACCGCTTT
JMFS147F06+           CGTAAACACCGTGTCTTTCCCCAACGCCTTGGCTTCCTTCTGGGAGGTCACCACCGCTTT
JMFS084E05+                                                                 CGCTTT
JMFS112E04+                                                                 CGCTTT
JMFS095G02+                                                                   CTTT
                      ____________________________________________________________
consensus             CGTAAACACCGTGTCTTTCCCCAACGCCTTGGCTTCCTTCTGGGAGGTCACCACCGCTTT
 
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JMFS138D07+           GACAGCTCTCTCGGTGAATCTCTCAAACACCCCGCAGACAATAGTCAGAGATCGCCTCTC
JMFS104H09+           GACAGCTCTCTCGGTGAATCTCTCAAACACCCCGCAGACAATAGTCAGAGATCGCCTCTC
JMSF030P16+           GACAGCTCTCTCGGTGAATCTCTCAAACACCCCGCAGACAATAGTCAGAGATCGCCTCTC
JMFS137D12+           GACAGCTCTCTCGGTGAATCTCTCAAACACCCCGCAGACAATAGTCAGAGATCGCCTCTC
JMFS147F06+           GACAGCTCTCTCGGTGAATCTCTCAAACACCCCGCAGACAATAGTCAGAGATCGCCTCTC
JMFS084E05+           GACAGCTCTCTCGGTGAATCTCTCAAACACCCCGCAGACAATAGTCAGAGATCGCCTCTC
JMFS112E04+           GACAGCTCTCTCGGTGAATCTCTCAAACACNCCGCAGACAATAGTCAGAGATCGCCTCTC
JMFS095G02+           GACAGCTCTCTCGGTGAATCTCTCAAACACCCCGCAGACAATAGTCAGAGATCGCCTCTC
                      ____________________________________________________________
consensus             GACAGCTCTCTCGGTGAATCTCTCAAACACCCCGCAGACAATAGTCAGAGATCGCCTCTC
 
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JMFS138D07+           TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
JMFS104H09+           TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
JMSF030P16+           TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
JMFS137D12+           TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
JMFS147F06+           TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
JMFS084E05+           TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
JMFS112E04+           TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
JMFS095G02+           TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
                      ____________________________________________________________
consensus             TTTACGTGGAAGCGCGCCGCAGCCCCTGGCCGAAACTGAAATTCCGAAAAGCGACGAGGA
 
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JMFS138D07+           GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
JMFS104H09+           GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
JMSF030P16+           GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
JMFS137D12+           GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
JMFS147F06+           GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
JMFS084E05+           GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
JMFS112E04+           GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
JMFS095G02+           GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
                      ____________________________________________________________
consensus             GCTAGAGCTGGAGCTAGTACTGCACGACGCCCTAGCGGAAACATTGAGCGCGGCAGAACG
 
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JMFS138D07+           AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
JMFS104H09+           AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
JMSF030P16+           AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
JMFS137D12+           AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
JMFS147F06+           AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
JMFS084E05+           AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
JMFS112E04+           AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
JMFS095G02+           AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
                      ____________________________________________________________
consensus             AGATTTTGAGGAAAGGGAGCAGCGCACATACCGATTTTTCCGGTGACTGTAAACCGAAAC
 
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JMFS138D07+           ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
JMFS104H09+           ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
JMSF030P16+           ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
JMFS137D12+           ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
JMFS147F06+           ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
JMFS084E05+           ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
JMFS112E04+           ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
JMFS095G02+           ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
                      ____________________________________________________________
consensus             ACGCCGGCCAAGCGGCGAAGAGAAGCGGTTAACGGTGGAGTTAACAGACAACGGCGATGA
 
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JMFS138D07+           ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
JMFS104H09+           ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
JMSF030P16+           ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
JMFS137D12+           ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
JMFS147F06+           ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
JMFS084E05+           ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
JMFS112E04+           ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
JMFS095G02+           ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
                      ____________________________________________________________
consensus             ACACGACAATTCCATCTCAAAATCCTTCAAACACTATATATAGATATAGATATGCAACTT
 
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JMFS138D07+           CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
JMFS104H09+           CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
JMSF030P16+           CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
JMFS137D12+           CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
JMFS147F06+           CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
JMFS084E05+           CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
JMFS112E04+           CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
JMFS095G02+           CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
                      ____________________________________________________________
consensus             CTTCTGCACGTATCAGAGTAATAAATAGCCGAATTGTGTATATGTATGTATGTAAAATAT
 
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JMFS138D07+           AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
JMFS104H09+           AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
JMSF030P16+           AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
JMFS137D12+           AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
JMFS147F06+           AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
JMFS084E05+           AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
JMFS112E04+           AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
JMFS095G02+           AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
                      ____________________________________________________________
consensus             AGAAGGGAAGAAAAAGGCGTTACGTCGGCCGGAAAGGAGGAGAGGAACACCGGCGAGCTG
 
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JMFS138D07+           CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCA                        
JMFS104H09+           CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCACGTTTGGATCTTT           
JMSF030P16+           CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCACGTTTGGATCTTTGAAAGCTGCA 
JMFS137D12+           CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCACGTTTGGATCTTTGAAAGCTGCAA
JMFS147F06+           CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCACGTTTGGATCTTTGAAAGCTGCAA
JMFS084E05+           CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCACGTTTGGATCTTTGAAAGCTGCAA
JMFS112E04+           CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCACGTTTGGATCTTTGAAAGCTGCAA
JMFS095G02+           CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCACGTTTGGATCTTTGAAAGCTGCAA
                      ____________________________________________________________
consensus             CGGCGGAGGGAGAAGTTATCGGAGGCTTCAAAGGCACGTTTGGATCTTTGAAAGCTGCAA
 
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JMFS137D12+           GTTAG                                                       
JMFS147F06+           GTTAGAAATGGTTGTATGG                                         
JMFS084E05+           GTTAGAAATGGTTGTATGGCACCAAATGATATATAAAAAAAGAGGATTTGAAT       
JMFS112E04+           GTTAGAAATGGTTGTATGGCACCAAATGATATATAAAAAAAGAGGATTTGAAT       
JMFS095G02+           GTTAGAAATGGTTGTATGGCACCAAATGATATATAAAAAAAGAGGATTTGAATGCCATAC
                      ____________________________________________________________
consensus             GTTAGAAATGGTTGTATGGCACCAAATGATATATAAAAAAAGAGGATTTGAATGCCATAC