| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040N07 | Sequence | 157 | 013138 (8) | 404 | 013138 (8) | gb|KJB83618.1| | 2e-31 | hypothetical protein B456_013G255200 [Gossypium raimondii] | |||
| JMFN010E08 | Sequence | 627 | 013138 (8) | ref|NP_001234402.1| | 1e-62 | ripening regulated protein DDTFR10 [Solanum lycopersicum] gb|AAG49034.1|AF204787 | |||||
| JMFS086E06 | Sequence | 626 | 013138 (8) | ref|NP_001234402.1| | 5e-56 | ripening regulated protein DDTFR10 [Solanum lycopersicum] gb|AAG49034.1|AF204787 | |||||
| JMSF032N15 | Sequence | 681 | 013138 (8) | ref|NP_001234402.1| | 2e-67 | ripening regulated protein DDTFR10 [Solanum lycopersicum] gb|AAG49034.1|AF204787 | 609 | 013138 (8) | ref|XP_002283673.1| | 3e-58 | PREDICTED: elongation factor 1-delta [Vitis vinifera] |
| JMSF046P14 | Sequence | 728 | 013138 (8) | ref|NP_001234402.1| | 2e-79 | ripening regulated protein DDTFR10 [Solanum lycopersicum] gb|AAG49034.1|AF204787 | 642 | 013138 (8) | ref|XP_006365638.1| | 3e-65 | PREDICTED: elongation factor 1-delta 1-like isoform X1 [Solanum tuberosum] ref| |
This contig is upended
. : . : . : . : . : . :
rJMFF040N07- TTTTTGCACTGCTAATACG
____________________________________________________________
consensus TTTTTGCACTGCTAATACG
. : . : . : . : . : . :
rJMFF040N07- AAAAAATGTTCATACAAAAAGACAGTTTGTCGAAACACTCAGAATGTCTAACCAAAACCA
____________________________________________________________
consensus AAAAAATGTTCATACAAAAAGACAGTTTGTCGAAACACTCAGAATGTCTAACCAAAACCA
. : . : . : . : . : . :
rJMFF040N07- ACTGAGAATACTATCACTTGGTAGGCCGTATAAGCCAATGCAATTTCCAACTTCTGAGTG
rJMSF032N15- TGCAATTTCCAACTTCTGAGTG
rJMSF046P14- TGCAATTTCCAACTTCTGAGTG
____________________________________________________________
consensus ACTGAGAATACTATCACTTGGTAGGCCGTATAAGCCAATGCAATTTCCAACTTCTGAGTG
. : . : . : . : . : . :
rJMFF040N07- CAGAAAATTCATATCTTGTTGAAGGCTACAATATCGCAGCTCTGAACATACTCATTCACA
rJMSF032N15- CAGAAAATTCATATCTTGTTGAAGGCTACAATATCGCAGCTCTGAACATACTCATTCACA
rJMSF046P14- CAGAAAATTCATATCTTGTTGAAGGCTACAATATCGCAGCTCTGAACATACTCATTCACA
____________________________________________________________
consensus CAGAAAATTCATATCTTGTTGAAGGCTACAATATCGCAGCTCTGAACATACTCATTCACA
. : . : . : . : . : . :
rJMFF040N07- GGTTCAACAGTGAGATAACTCTCAATAAGTTCATCCACCGACACAAGGTCATCCACAATG
rJMSF032N15- GGTTCAACAGTGAGATAACTCTCAATAAGTTCATCCACCGACACAAGGTCATCCACAATG
rJMSF046P14- GGTTCAACAGTGAGATAACTCTCAATAAGTTCATCCACCGACACAAGGTCATCCACAATG
JMSF046P14+ ATCCACAATG
____________________________________________________________
consensus GGTTCAACAGTGAGATAACTCTCAATAAGTTCATCCACCGACACAAGGTCATCCACAATG
. : . : . : . : . : . :
rJMFF040N07- GTGAGCATGATTTGTAATTTTCTTAATACCATATCCAACGGGAACAAGTTTAGATGCTCC
rJMSF032N15- GTGAGCATGATTTGTAA-TTTCTTAATACCATATCCAACGGGAACAAGTTTAGATGCTCC
rJMSF046P14- GTGAGCATGATTTGTAA-TTTCTTAATACCATATCCAACGGGAACAAGTTTAGATGCTCC
JMSF046P14+ GTGAGCATGATTTGTAA-TTTCTTAATACCATATCCAACGGGAACAAGTTTAGATGCTCC
JMSF032N15+ CGGGAACAAGTTTAGATGCTCC
____________________________________________________________
consensus GTGAGCATGATTTGTAA-TTTCTTAATACCATATCCAACGGGAACAAGTTTAGATGCTCC
. : . : . : . : . : . :
rJMFF040N07- CCAAAGTAATCCTTCCATTGTAACACTTCGAACAGCTTCCTCAAGCTTTTTCATATCAGT
rJMSF032N15- CCAAAGTAATCCTTCCATTGTAACACTTCGAACAGCTTCCTCAAGCTTTTTCATATCAGT
rJMSF046P14- CCAAAGTAATCCTTCCATTGTAACACTTCGAACAGCTTCCTCAAGCTTTTTCATATCAGT
JMSF046P14+ CCAAAGTAATCCTTCCATTGTAACACTTCGAACAGCTTCCTCAAGCTTTTTCATATCAGT
JMFN010E08+ TAATCCTTCCATTGTAACACTTCGAACAGCTTCCTCAAGCTTTTTCATATCAGT
JMSF032N15+ CCAAAGTAATCCTTCCATTGTAACACTTCGAACAGCTTCCTCAAGCTTTTTCATATCAGT
JMFS086E06+ GCTTCCTCAAGCTTTTTCATATCAGT
____________________________________________________________
consensus CCAAAGTAATCCTTCCATTGTAACACTTCGAACAGCTTCCTCAAGCTTTTTCATATCAGT
. : . : . : . : . : . :
rJMFF040N07- CTCATCATCCCATGGCTTCACATCC
rJMSF032N15- CTCATCATCCCATGGCTTCACATCCATAAGAACTGAGGACTTTCCAGACTCTTTCTTCTT
rJMSF046P14- CTCATCATCCCATGGCTTCACATCCATAAGAACTGAGGACTTTCCAGACTCTTTCTTCTT
JMSF046P14+ CTCATCATCCCATGGCTTCACATCCATAAGAACTGAGGACTTTCCAGACTCTTTCTTCTT
JMFN010E08+ CTCATCATCCCATGGCTTCACATCCATAAGAACTGAGGACTTTCCAGACTCTTTCTTCTT
JMSF032N15+ CTCATCATCCCATGGCTTCACATCCATAAGAACTGAGGACTTTCCAGACTCTTTCTTCTT
JMFS086E06+ CTCATCATCCCATGGCTTCACATCCATAAGAACTGAGGACTTTCCAGACTCTTTCTTCTT
____________________________________________________________
consensus CTCATCATCCCATGGCTTCACATCCATAAGAACTGAGGACTTTCCAGACTCTTTCTTCTT
. : . : . : . : . : . :
rJMSF032N15- GCTTGAAGCCTTCACAGCTGCAGCACGCTCTTCAGCAGCCTTCTTTTCCTCTTCAGTCTC
rJMSF046P14- GCTTGAAGCCTTCACAGCTGCAGCACGCTCTTCAGCAGCCTTCTTTTCCTCTTCAGTCTC
JMSF046P14+ GCTTGAAGCCTTCACAGCTGCAGCACGCTCTTCAGCAGCCTTCTTTTCCTCTTCAGTCTC
JMFN010E08+ GCTTGAAGCCTTTACAGCTGCAGCACGCTCTTCAGCAGCCTTCTTTTCCTCTTCAGTCTC
JMSF032N15+ GCTTGAAGCCTTCACAGCTGCAGCACGCTCTTCAGCAGCCTTCTTTTCCTCTTCAGTCTC
JMFS086E06+ GCTTGAAGCCTTCACAGCTGCAGCACGCTCTTCAGCAGCCTTCTTTTCCTCTTCAGTCTC
____________________________________________________________
consensus GCTTGAAGCCTTCACAGCTGCAGCACGCTCTTCAGCAGCCTTCTTTTCCTCTTCAGTCTC
. : . : . : . : . : . :
rJMSF032N15- CTCACCAAACAAGTCAACATCATCATCGTCGTCGTCATCAGCCGCTGAGGCCTTTGTGTC
rJMSF046P14- CTCACCAAACAAGTCAACATCATCATCGTCGTCGTCATCAGCCGCTGAGGCCTTTGTGTC
JMSF046P14+ CTCACCAAACAAGTCAACATCATCATCGTCGTCGTCATCAGCCGCTGAGGCCTTTGTGTC
JMFN010E08+ CTCACCAAACAAGTCAACATCATCATCGTCGTCGTCATCAGCCGCTGAGGCCTTTGTGTC
JMSF032N15+ CTCACCAAACAAGTCAACATCATCATCGTCGTCGTCATCAGCCGCTGAGGCCTTTGTGTC
JMFS086E06+ CTCACCAAACAAGTCAACATCATCATCGTCGTCGTCATCAGCCGCTGAGGCCTTTGTGTC
____________________________________________________________
consensus CTCACCAAACAAGTCAACATCATCATCGTCGTCGTCATCAGCCGCTGAGGCCTTTGTGTC
. : . : . : . : . : . :
rJMSF032N15- AGCAGCAGGGGGTGTTGCCACACCCGCAGGGATAGGTGCAAAACCTTCAACGATCACACC
rJMSF046P14- AGCAGCAGGGGGTGTTGCCACACCCGCAGGGATAGGTGCAAAACCTTCAACGATCACACC
JMSF046P14+ AGCAGCAGGGGGTGTTGCCACACCCGCAGGGATAGGTGCAAAACCTTCAACGATCACACC
JMFN010E08+ AGCAGCAGGGGGTGTTGCCACACCCGCAGGGATAGGTGCAAAACCTTCAACGATCACACC
JMSF032N15+ AGCAGCAGGGGGTGTTGCCACACCCGCAGGGATAGGTGCAAAACCTTCAACGATCACACC
JMFS086E06+ AGCAGCAGGGGGTGTTGCCACACCCGCAGGGATAGGTGCAAAACCTTCAACGATCACACC
____________________________________________________________
consensus AGCAGCAGGGGGTGTTGCCACACCCGCAGGGATAGGTGCAAAACCTTCAACGATCACACC
. : . : . : . : . : . :
rJMSF032N15- ACAACCTTCTCCAGATACACCAGA
rJMSF046P14- ACAACCTTCTCCAGATACACCAGAAATCCTCAAAAGTGCATCAATGTGTTTGTACC
JMSF046P14+ ACAACCTTCTCCAGATACACCAGAAATCCTCAAAAGTGCATCAATGTGTTTGTACCACCG
JMFN010E08+ ACAACCTTCTCCAGATACACCAGAAATCCTCAAAAGTGCATCAATGTGTTTGTACCACCG
JMSF032N15+ ACAACCTTCTCCAGATACACCAGAAATCCTCAAAAGTGCATCAATGTGTTTGTACCACCG
JMFS086E06+ ACAACCTTCTCCAGATACACCAGAAATCCTCAAAAGTGCATCAATGTGTTTGTACCACCG
____________________________________________________________
consensus ACAACCTTCTCCAGATACACCAGAAATCCTCAAAAGTGCATCAATGTGTTTGTACCACCG
. : . : . : . : . : . :
JMSF046P14+ GGAAGCATTCACATATTCAGATGATGGGAGCTTGGAAAGTGATGAGTAAACTGTAATGTC
JMFN010E08+ GGAAGCATTCACATATTCAGATGATGGGAGCTTGGAAAGTGATGAGTAAACTGTAATGTC
JMSF032N15+ GGAAGCATTCACATATTCAGATGATGGGAGCTTGGAAAGTGATGAGTAAACTGTAATGTC
JMFS086E06+ GGAAGCATTCACATATTCAGATGATGGGAGCTTGGAAAGTGATGAGTAAACTGTAATGTC
____________________________________________________________
consensus GGAAGCATTCACATATTCAGATGATGGGAGCTTGGAAAGTGATGAGTAAACTGTAATGTC
. : . : . : . : . : . :
JMSF046P14+ ATCCTTGGAAGCTTGATACCCAGTGATGTAACTACGCGTCAGGAGGTACTCATCAAGCTT
JMFN010E08+ ATCCTTGGAAGCTTGATACCCAGTGATGTAACTACGCGTCAGGAGGTACTCATCAAGCTT
JMSF032N15+ ATCCTTGGAAGCTTGATACCCAGTGATGTAACTACGCGTCAGGAGGTACTCATCAAGCTT
JMFS086E06+ ATCCTTGGAAGCTTGATACCCAGTGATGTAACTACGCGTCAGGAGGTACTCATCAAGCTT
____________________________________________________________
consensus ATCCTTGGAAGCTTGATACCCAGTGATGTAACTACGCGTCAGGAGGTACTCATCAAGCTT
. : . : . : . : . : . :
JMSF046P14+ CTTGACGCCGGCATCTGAGCTTAGGTTGTAGAATGCGACAGCCATTTCCAGATAATAATG
JMFN010E08+ CTTGACGCCGGCATCTGAGCTTAGGTTGTAGAATGCGACAGCCATTTCCAGATAATAATG
JMFF040N07+ TGAGCTTAGGTTGTAGAATGCGACAGCCATTTCCAGATAATAATG
JMSF032N15+ CTTGACGCCGGCATCTGAGCTTAGGTTGTAGAATGCGACAGCCATTTCCAGATAATAATG
JMFS086E06+ CTTGACGCCGGCATCTGAGCTTAGGTTGTAGAATGCGACAGCCATTTCCAGATAATAATG
____________________________________________________________
consensus CTTGACGCCGGCATCTGAGCTTAGGTTGTAGAATGCGACAGCCATTTCCAGATAATAATG
. : . : . : . : . : . :
JMSF046P14+ TGAAAATTTCCTTGATGCTTAGGGTTCTTCAAGCAACTCGGTGGCTTGGGAGAGAAGTGG
JMFN010E08+ TGAAAATTTCCTTGATGCTTAGGGTTCTTCAAGCAACTCGGTGGCTTGGGAGAGAAGTGG
JMFF040N07+ TGAAAATTTCCTTGATGCTTAGGGTTCTTCAAGCAACTCGGTGGCTTGGGAGAGAAGTGG
JMSF032N15+ TGAAAATTTCCTTGATGCTTAGGGTTCTTCAAGCAACTCGGTGGCTTGGGAGAGAAGTGG
JMFS086E06+ TGAAAATTTCCTTGATGCTTAGGGTTCTTCAAGCAACTCGGTGGCTTGGGAGAGAAGTGG
____________________________________________________________
consensus TGAAAATTTCCTTGATGCTTAGGGTTCTTCAAGCAACTCGGTGGCTTGGGAGAGAAGTGG
. : . : . : . : . : . :
JMSF046P14+ AGTGCAGTGTTGAAGGGGCTGAGAACGCGAGAGGATGAAGTGCGGCAGAAAT
JMFN010E08+ AGTGCAGTGTTGAAGGGGCTGAGAACGCGAGAG
JMFF040N07+ AGTGCAGTGTTGAAGGGGCTGAGAACGCGAGAGGATGAAGTGCGGCAGAAAT
JMSF032N15+ AGTGCAGTGTTGAAGGGGCTGAGAACGCGAGAGGATGAAGTGCGGCAGAAAT
JMFS086E06+ AGTGCAGTGTTGAAGGGGCTGAGAACGCGAGAGGATGAAGTGCGGCAGAAATGAGAGAAA
____________________________________________________________
consensus AGTGCAGTGTTGAAGGGGCTGAGAACGCGAGAGGATGAAGTGCGGCAGAAATGAGAGAAA