Contig 013137:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS086A01Sequence618013137 (4)gb|AFP19451.1|1e-95transport inhibitor response 1 [Camellia sinensis]
JMSF010N21Sequence263013137 (4)gb|KJB23186.1|3e-17hypothetical protein B456_004G085900 [Gossypium raimondii]
JMSF018F06Sequence574013137 (4)ref|XP_007050790.1|3e-86F-box/RNI-like superfamily protein isoform 1 [Theobroma cacao] ref|XP_007050791.
JMSF038D23Sequence711013137 (4)ref|NP_001234673.1|5e-111TIR1-like protein [Solanum lycopersicum] gb|ACU81102.1| TIR1-like protein [Solan832024643gb|KDP28084.1|4e-88hypothetical protein JCGZ_13855 [Jatropha curcas]

Alignment

This contig is upended


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JMSF038D23+                  CTCAAGCAAGTTATGTCAAGAGACACGAGCGACGTGCAGTTCTCAGAGATATG
                      ____________________________________________________________
consensus                    CTCAAGCAAGTTATGTCAAGAGACACGAGCGACGTGCAGTTCTCAGAGATATG
 
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JMSF038D23+           ACTAAGCCAATACCCACTTAGGTCCTCCACATCACACTCCCGCAGGTTTAGTTCCTTCAA
JMFS086A01+                                                     CAGGTTTAGTTCCTTCAA
                      ____________________________________________________________
consensus             ACTAAGCCAATACCCACTTAGGTCCTCCACATCACACTCCCGCAGGTTTAGTTCCTTCAA
 
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JMSF038D23+           ATTCCTGCAATTGGCGGTTATGGCGGCGAGTCCATCCGTAGTGAACCCCTCGCAAAACGC
JMFS086A01+           ATTCCTGCAATTGGCGGTTATGGCGGCGAGTCCATCCGTAGTGAACCCCTCGCAAAACGC
                      ____________________________________________________________
consensus             ATTCCTGCAATTGGCGGTTATGGCGGCGAGTCCATCCGTAGTGAACCCCTCGCAAAACGC
 
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JMSF038D23+           AAAGACGAGGACCTTGAAGTTCTTAAAGGACCTGGCGATGAGCTCCAAGGTCTCGTCCGT
JMSF018F06+                  AGGACCTTGAAGTTCTTAAAGGACCTGGCGATGAGCTCCAAGGTCTCGTCCGT
JMFS086A01+           AAAGACGAGGACCTTGAAGTTCTTAAAGGACCTGGCGATGAGCTCCAAGGTCTCGTCCGT
                      ____________________________________________________________
consensus             AAAGACGAGGACCTTGAAGTTCTTAAAGGACCTGGCGATGAGCTCCAAGGTCTCGTCCGT
 
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JMSF038D23+           GACGACCATTCTCTTGAGCCTAATCTCCTCGAGCCAAGGGTACGCGCGGGACATGGCGAC
JMSF018F06+           GACGACCATTCTCTTGAGCCTAATCTCCTCGAGCCAAGGGTACGCGCGGGACATGGCGAC
JMFS086A01+           GACGACCATTCTCTTGAGCCTAATCTCCTCGAGCCAAGGGTACGCGCGGGACATGGCGAC
                      ____________________________________________________________
consensus             GACGACCATTCTCTTGAGCCTAATCTCCTCGAGCCAAGGGTACGCGCGGGACATGGCGAC
 
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JMSF038D23+           AACCCAGGGGAAGACGAAGCCGCCCCAGTTCTCCGGAACCAGATTGAAGTCCGCGAAATG
JMSF018F06+           AACCCAGGGGAAGACGAAGCCGCCCCAGTTCTCCGGAACCAGATTGAAGTCCGCGAAATG
JMFS086A01+           AACCCAGGGGAAGACGAAGCCGCCCCAGTTCTCCGGAACCAGATTGAAGTCCGCGAAATG
                      ____________________________________________________________
consensus             AACCCAGGGGAAGACGAAGCCGCCCCAGTTCTCCGGAACCAGATTGAAGTCCGCGAAATG
 
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JMSF038D23+           AGGCTTCCCCTTGAGCTCCAGCGATCGGACCTCCGGGAAGCGGCGGATCATGATGCTAGG
JMSF018F06+           AGGCTTCCCCTTGAGCTCCAGCGATCGGACCTCCGGGAAGCGGCGGATCATGATGCTAGG
JMFS086A01+           AGGCTTCCCCTTGAGCTCCAGCGATCGGACCTCCGGGAAGCGGCGGATCATGATGCTAGG
                      ____________________________________________________________
consensus             AGGCTTCCCCTTGAGCTCCAGCGATCGGACCTCCGGGAAGCGGCGGATCATGATGCTAGG
 
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JMSF038D23+           GCTCACGGCGTAGCAGTTCCCGACGAATATCCTCCTCCGGCACCACCTCTCGATCTCGAA
JMSF018F06+           GCTCACGGCGTAGCAGTTCCCGACGAATATCCTCCTCCGGCACCACCTCTCGATCTCGAA
JMSF010N21+                                                CGGCACCACCTCTCGATCTCGAA
JMFS086A01+           GCTCACGGCGTAGCAGTTCCCGACGAATATCCTCCTCCGGCACCACCTCTCGATCTCGAA
                      ____________________________________________________________
consensus             GCTCACGGCGTAGCAGTTCCCGACGAATATCCTCCTCCGGCACCACCTCTCGATCTCGAA
 
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JMSF038D23+           CCACGACTTGCACACCAGCGACACCGCGTTCCGGTCCTTGTCGGAGCTCAGAAACGAGAA
JMSF018F06+           CCACGACTTGCACACCAGCGACACCGCGTTCCGGTCCTTGTCGGAGCTCAGAAACGAGAA
JMSF010N21+           CCACGACTTGCACACCAGCGACACCGCGTTCCGGTCCTTGTCGGAGCTCAGAAACGAGAA
JMFS086A01+           CCACGACTTGCACACCAGCGACACCGCGTTCCGGTCCTTGTCGGAGCTCAGAAACGAGAA
                      ____________________________________________________________
consensus             CCACGACTTGCACACCAGCGACACCGCGTTCCGGTCCTTGTCGGAGCTCAGAAACGAGAA
 
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JMSF038D23+           GACGTGCTCCAACACTTCCTCCGGGAACGAGTACGCCATTGTACGGTGCAAAAGGTGGGA
JMSF018F06+           GACGTGCTCCAACACTTCCTCCGGGAACGAGTACGCCATTGTACGGTGCAAAAGGTGGGA
JMSF010N21+           GACGTGCTCCAACACTTCCTCCGGGAACGAGTACGCCATTGTACGGTGCAAAAGGTGGGA
JMFS086A01+           GACGTGCTCCAACACTTCCTCCGGGAACGAGTACGCCATTGTACGGTGCAAAAGGTGGGA
                      ____________________________________________________________
consensus             GACGTGCTCCAACACTTCCTCCGGGAACGAGTACGCCATTGTACGGTGCAAAAGGTGGGA
 
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JMSF038D23+           CACAGGTAATTCCAGAGATGAACTCCTTGGCGCTCGGATCAGTGCTCGTGAAACTTCAGA
JMSF018F06+           CACAGGTAATTCCAGAGATGAACTCCTTGGCGCTCGGATCAGTGCTCGTGAAACTTCAGA
JMSF010N21+           CACAGGTAATTCCAGAGATGAACTCCTTGGCGCTCGGATCAGTGCTCGTGAAACTTCAGA
JMFS086A01+           CACAGGTAATTCCAGAGATGAACTCCTTGGCGCTCGGATCAGTGCTCGTGAAACTTCAGA
                      ____________________________________________________________
consensus             CACAGGTAATTCCAGAGATGAACTCCTTGGCGCTCGGATCAGTGCTCGTGAAACTTCAGA
 
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JMSF038D23+           TCTGAAGCCACATTAACAAAGCTTAGATTTGCTGAGGAGAGAGAGAGAGTGAGAAAC   
JMSF018F06+           TCTGAAGCCACATTAACAAAGCTTAGATTTGCTGAGGAGAGAGAGAGAGTGAGAAAC   
JMSF010N21+           TCTGAAGCCACATTAACAAAGCTTAGATTTGCTGAGGAGAGAGAGAGAGTGAGAAAC   
JMFS086A01+           TCTGAAGCCACATTAACAAAGCTTAGATTTGCTGAGGAGAGAGAGAGAGTGAGAAACAGA
                      ____________________________________________________________
consensus             TCTGAAGCCACATTAACAAAGCTTAGATTTGCTGAGGAGAGAGAGAGAGTGAGAAACAGA