Contig 013134:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS049E07Sequence607013134 (3)emb|CAF74710.1|9e-50MYC transcription factor [Solanum tuberosum]
JMFS064G07Sequence622013134 (3)emb|CAF74710.1|5e-51MYC transcription factor [Solanum tuberosum]
JMFS081D01Sequence633013134 (3)ref|XP_009609942.1|2e-44PREDICTED: transcription factor MYC2-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS049E07+                                                            TGGGTCATGGA
JMFS064G07+             AGGTGTAGAACGCTTGGCCTGGTAGACCGGACCCGGTCATGAACGATTGGGTCATGGA
                      ____________________________________________________________
consensus               AGGTGTAGAACGCTTGGCCTGGTAGACCGGACCCGGTCATGAACGATTGGGTCATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS049E07+           AACCAGAAANAACCACTCGGTGTCCGTGACTTCCTCGTCGACGGCGTCGTCGGTGGAGGC
JMFS064G07+           AACCAGAAANAACCACTCGGTGTCCGTGACTTCCTCGTCGACGGCGTCGTCGGTGGAGGC
JMFS081D01+                                      GACTTCCTCGTCGACGGCGTCGTCGGTGGAGGC
                      ____________________________________________________________
consensus             AACCAGAAANAACCACTCGGTGTCCGTGACTTCCTCGTCGACGGCGTCGTCGGTGGAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS049E07+           GGGGCCGGAAATTAAAGAATTGAGCTCCCGGAGGACTTTTTTCCGGTGCTCTTGCTCCGC
JMFS064G07+           GGGGCCGGAAATTAAAGAATTGAGCTCCCGGAGGACTTTTTTCCGGTGCTCTTGCTCCGC
JMFS081D01+           GGGGCCGGAAATTAAAGAATTGAGCTCCCGGAGGACTTTTTTCCGGTGCTCTTGCTCCGC
                      ____________________________________________________________
consensus             GGGGCCGGAAATTAAAGAATTGAGCTCCCGGAGGACTTTTTTCCGGTGCTCTTGCTCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS049E07+           TATCGACGCCGGCGACGACCCTTTCTTGCTCCGCTTCGCCTTATCCTCCTCCCCTTTATA
JMFS064G07+           TATCGACGCCGGCGACGACCCTTTCTTGCTCCGCTTCGCCTTATCCTCCTCCCCTTTATA
JMFS081D01+           TATCGACGCCGGCGACGACCCTTTCTTGCTCCGCTTCGCCTTATCCTCCTCCCCTTTATA
                      ____________________________________________________________
consensus             TATCGACGCCGGCGACGACCCTTTCTTGCTCCGCTTCGCCTTATCCTCCTCCCCTTTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS049E07+           GTACCCGTCGCCCCACCCTAGAAACGCCTGCGCGGCGAAGTCGTCGACGGAGCTCTGCCA
JMFS064G07+           GTACCCGTCGCCCCACCCTAGAAACGCCTGCGCGGCGAAGTCGTCGACGGAGCTCTGCCA
JMFS081D01+           GTACCCGTCGCCCCACCCTAGAAACGCCTGCGCGGCGAAGTCGTCGACGGAGCTCTGCCA
                      ____________________________________________________________
consensus             GTACCCGTCGCCCCACCCTAGAAACGCCTGCGCGGCGAAGTCGTCGACGGAGCTCTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS049E07+           GAAAATAGCGTACGTCCAGCTCTCCTGCGCGCCGTCGATCAGCGTCTGCAGCCGCTGCTG
JMFS064G07+           GAAAATAGCGTACGTCCAGCTCTCCTGCGCGCCGTCGATCAGCGTCTGCAGCCGCTGCTG
JMFS081D01+           GAAAATAGCGTACGTCCAGCTCTCCTGCGCGCCGTCGATCAGCGTCTGCAGCCGCTGCTG
                      ____________________________________________________________
consensus             GAAAATAGCGTACGTCCAGCTCTCCTGCGCGCCGTCGATCAGCGTCTGCAGCCGCTGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS049E07+           TAGCGTCTCCTGGTTGAACGCCGCCGCCGCAGGCGGCGGCGGCGG               
JMFS064G07+           TAGCGTCTCCTGGTTGAACGCCGCCGCCGCAGGCGGCGGCGGCGG               
JMFS081D01+           TAGCGTCTCCTGGTTGAACGCCGCCGCCGCAGGCGGCGGCGGCGGCGCGTGAGCAGACGT
                      ____________________________________________________________
consensus             TAGCGTCTCCTGGTTGAACGCCGCCGCCGCAGGCGGCGGCGGCGGCGCGTGAGCAGACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081D01+           CGTAGTCATCGCCGCCGACGCGCCGCCGCCGTTGTTGGTAGTAGCAGTAGTGGACGGCGG
                      ____________________________________________________________
consensus             CGTAGTCATCGCCGCCGACGCGCCGCCGCCGTTGTTGGTAGTAGCAGTAGTGGACGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081D01+           GAGCCAAAACTGGGGCATATCGGAGGACAAGAACGCCTCCATCATGGACGCGTCATCGCC
                      ____________________________________________________________
consensus             GAGCCAAAACTGGGGCATATCGGAGGACAAGAACGCCTCCATCATGGACGCGTCATCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081D01+           GGCGGCGGACGCCGTGGCGGCCCAGAGATTCGTCGACGGTAGCCTATAATCCGTCATCCA
                      ____________________________________________________________
consensus             GGCGGCGGACGCCGTGGCGGCCCAGAGATTCGTCGACGGTAGCCTATAATCCGTCATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081D01+           ACAATCGGACTTGAGATTCACAGTGAAAATTCTCGCCGGATTTTCAAGAAACTGAGCAGT
                      ____________________________________________________________
consensus             ACAATCGGACTTGAGATTCACAGTGAAAATTCTCGCCGGATTTTCAAGAAACTGAGCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081D01+           GGAGTCTGCTCTCTTACTGTATTTTTAGAGAGAGAGAGAGTTGGGAGGAAGAGAGTGGTG
                      ____________________________________________________________
consensus             GGAGTCTGCTCTCTTACTGTATTTTTAGAGAGAGAGAGAGTTGGGAGGAAGAGAGTGGTG