Contig 013127:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020B01Sequence636013127 (5)ref|XP_009607281.1|3e-40PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X4 [Nicotia
JMFS049B03Sequence616013127 (5)ref|XP_006358172.1|2e-44PREDICTED: microtubule-associated protein futsch-like isoform X5 [Solanum tuber
JMFS073D02Sequence627013127 (5)ref|XP_009759169.1|7e-19PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X8 [Nicotia
JMFS139E05Sequence626013127 (5)ref|XP_006358172.1|7e-45PREDICTED: microtubule-associated protein futsch-like isoform X5 [Solanum tuber
JMFS160B10Sequence581013127 (5)ref|XP_006358172.1|7e-43PREDICTED: microtubule-associated protein futsch-like isoform X5 [Solanum tuber

Alignment

This contig is upended


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JMFS139E05+                                                  GACAGAACTTCAGAATGGCAG
                      ____________________________________________________________
consensus                                                    GACAGAACTTCAGAATGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS139E05+           TAATTTCCTCAGAAGAACCAGCAGCTTGGTACCAAGCACTCTCCAACTCTCCTCTTAATG
JMFS160B10+                                       GTACCAAGCACTCTCCAACTCTCCTCTTAATG
JMFS049B03+                       AAGAACCAGCAGCTTGGTACCAAGCACTCTCCAACTCTCCTCTTAATG
                      ____________________________________________________________
consensus             TAATTTCCTCAGAAGAACCAGCAGCTTGGTACCAAGCACTCTCCAACTCTCCTCTTAATG
 
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JMFS139E05+           TTGTGAGTCTCAACTCCATCGCCCGAAGTAATTCGTTCTTGGAAGAATCTGGTGCGACGT
JMFS160B10+           TTGTGAGTCTCAACTCCATCGCCCGAAGTAATTCGTTCTTGGAAGAATCTGGTGCGACGT
JMFS049B03+           TTGTGAGTCTCAACTCCATCGCCCGAAGTAATTCGTTCTTGGAAGAATCTGGTGCGACGT
                      ____________________________________________________________
consensus             TTGTGAGTCTCAACTCCATCGCCCGAAGTAATTCGTTCTTGGAAGAATCTGGTGCGACGT
 
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JMFS139E05+           AAGTATCATCAGCCTTTTCATATATAGAAGCATGAAATTTTAAGGATTCTTCCAGCTGAG
JMFS160B10+           AAGTATCATCAGCCTTTTCATATATAGAAGCATGAAATTTTAAGGATTCTTCCAGCTGAG
JMFS049B03+           AAGTATCATCAGCCTTTTCATATATAGAAGCATGAAATTTTAAGGATTCTTCCAGCTGAG
JMFS020B01+                   TCAGCCTTTTCATATATAGAAGCATGAAATTTTAAGGATTCTTCCAGCTGAG
                      ____________________________________________________________
consensus             AAGTATCATCAGCCTTTTCATATATAGAAGCATGAAATTTTAAGGATTCTTCCAGCTGAG
 
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JMFS139E05+           ATATCTCATTTTCCATAGCCTTGACCTTATCCTGAACTTCTGATGAACTGATAATATGAA
JMFS160B10+           ATATCTCATTTTCCATAGCCTTGACCTTATCCTGAACTTCTGATGAACTGATAATATGAA
JMFS049B03+           ATATCTCATTTTCCATAGCCTTGACCTTATCCTGAACTTCTGATGAACTGATAATATGAA
JMFS020B01+           ATATCTCATTTTCCATAGCCTTGACCTTATCCTGAACTTCTGATGAACTGATAATATGAA
                      ____________________________________________________________
consensus             ATATCTCATTTTCCATAGCCTTGACCTTATCCTGAACTTCTGATGAACTGATAATATGAA
 
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JMFS139E05+           CAAATCTCATTAAAGCAGATATTGTAAACCACTTAGCATCATCAAGATTCTCTGGTGGTT
JMFS160B10+           CAAATCTCATTAAAGCAGATCTTGTAAACCACTTAGCATCATCAAGATTCTCTGGTGGTT
JMFS049B03+           CAAATCTCATTAAAGCAGATCTTGTAAACCACTTAGCATCATCAAGATTCTCTGGTGGTT
JMFS020B01+           CAAATCTCATTAAAGCAGATCTTGTAAACCACTTAGCATCATCAAGATTCTCTGGTGGTT
JMFS073D02+                                            TAGCATCATCAAGATTCTCTGGTGGTT
                      ____________________________________________________________
consensus             CAAATCTCATTAAAGCAGATCTTGTAAACCACTTAGCATCATCAAGATTCTCTGGTGGTT
 
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JMFS139E05+           GAAGTTTGAAGGTTTCATCTGATCCTCTTGAGCATAAAGCTTTGATTTTGGGAGACTGCA
JMFS160B10+           GAAGTTTGAAGGTTTCATCTGATCCTCTTGAGCATAAAGCTTTGATTTTGGGAGACTGCA
JMFS049B03+           GAAGTTTGAAGGTTTCATCTGATCCTCTTGAGCATAAAGCTTTGATTTTGGGAGACTGCA
JMFS020B01+           GAAGTTTGAAGGTTTCATCTGATCCTCTTGAGCATAAAGCTTTGATTTTGGGAGACTGCA
JMFS073D02+           GAAGTTTGAAGGTTTCATCTGATCCTCTTGAGCATAAAGCTTTGATTTTGGGAGACTGCA
                      ____________________________________________________________
consensus             GAAGTTTGAAGGTTTCATCTGATCCTCTTGAGCATAAAGCTTTGATTTTGGGAGACTGCA
 
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JMFS139E05+           TAGCCAGTGGCTCCAGAACTCCAGAAGCAACAGTCTCTATCTTGTTGTGGTAACAAATGC
JMFS160B10+           TAGCCAGTGGCTCCAGAACTCCAGAAGCAACAGTCTCTATCTTGTTGTGGTAACAAATGC
JMFS049B03+           TAGCCAGTGGCTCCAGAACTCCAGAAGCAACAGTCTCTATCTTGTTGTGGTAACAAATGC
JMFS020B01+           TAGCCAGTGGCTCCAGAACTCCAGAAGCAACAGTCTCTATCTTGTTGTGGTAACAAATGC
JMFS073D02+           TAGCCAGTGGCTCCAGAACTCCAGAAGCAACAGTCTCTATCTTGTTGTGGTAACAAATGC
                      ____________________________________________________________
consensus             TAGCCAGTGGCTCCAGAACTCCAGAAGCAACAGTCTCTATCTTGTTGTGGTAACAAATGC
 
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JMFS139E05+           AAGCCTCATATCTATTCTGGCTTGGAAAAACCCGAAATTCGATATAGTCCACCATCCTGT
JMFS160B10+           AAGCCTCATATCTATTCTGGCTTGGAAAAACCCGAAATTCGATATAGTCCACCATCCTGT
JMFS049B03+           AAGCCTCATATCTATTCTGGCTTGGAAAAACCCGAAATTCGATATAGTCCACCATCCTGT
JMFS020B01+           AAGCCTCATATCTATTCTGGCTTGGAAAAACCCGAAATTCGATATAGTCCACCATCCTGT
JMFS073D02+           AAGCCTCATATCTATTCTGGCTTGGAAAAACCCGAAATTCGATATAGTCCACCATCCTGT
                      ____________________________________________________________
consensus             AAGCCTCATATCTATTCTGGCTTGGAAAAACCCGAAATTCGATATAGTCCACCATCCTGT
 
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JMFS139E05+           TCCCTCAATACAAGAATCCTAACAACTGCAGACTTTGAATGTGCAATCACAGAATGAGAA
JMFS160B10+           TCCCTCAATACAAGAATCCTAACAACTGCAGACTTTGAATGTGCAATCACAGAATGAGAA
JMFS049B03+           TCCCTCAATACAAGAATCCTAACAACTGCAGACTTTGAATGTGCAATCACAGAATGAGAA
JMFS020B01+           TCCCTCAATACAAGAATCCTAACAACTGCAGACTTTGAATGTGCAATCACAGAATGAGAA
JMFS073D02+           TCCCTCAATACAAGAATCCTAACAACTGCAGACTTTGAATGTGCAATCACAGAATGAGAA
                      ____________________________________________________________
consensus             TCCCTCAATACAAGAATCCTAACAACTGCAGACTTTGAATGTGCAATCACAGAATGAGAA
 
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JMFS139E05+           TTCTTAAGCTCTCTCTTAGCAGCACCCCCAAAATCTCATCTCA                 
JMFS160B10+           TTCTTAAGCTCTCTCTTAGCAGCACCCCCAAAATCTCATCTCA                 
JMFS049B03+           TTCTTAAGCTCTCTCTTAGCAGCACCCCCAAAATCTCATCTCA                 
JMFS020B01+           TTCTTAAGCTCTCTCTTAGCAGCACCCCCAAAATCTCATCTCA                 
JMFS073D02+           TTCTTAAGCTCTCTCTTAGCAGCACCCCCAAAATCTCATCTCACAATTTCAGGAGATAAA
                      ____________________________________________________________
consensus             TTCTTAAGCTCTCTCTTAGCAGCACCCCCAAAATCTCATCTCACAATTTCAGGAGATAAA
 
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JMFS073D02+           GATAAGAACCACTCTGCCTTCAAAATGGCTATGAACAACCAACCAAACAGCAATAAGATC
                      ____________________________________________________________
consensus             GATAAGAACCACTCTGCCTTCAAAATGGCTATGAACAACCAACCAAACAGCAATAAGATC
 
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JMFS073D02+           CACAAATCCAACTACCAACAGGGCAACATGCCAACAAAAAGGAAAACAAAACAAAACAAA
                      ____________________________________________________________
consensus             CACAAATCCAACTACCAACAGGGCAACATGCCAACAAAAAGGAAAACAAAACAAAACAAA
 
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JMFS073D02+           ACACCAAATTCAGGATTCTAACCTAAGAAAGAAAAAAAATCCAAACTTTGCAAGAAAACA
                      ____________________________________________________________
consensus             ACACCAAATTCAGGATTCTAACCTAAGAAAGAAAAAAAATCCAAACTTTGCAAGAAAACA
 
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JMFS073D02+           ACAAGACTCCAAGCCTACCGACAAAGACAGCACAGTTTTCCTAAACTGTTCATACCCATC
                      ____________________________________________________________
consensus             ACAAGACTCCAAGCCTACCGACAAAGACAGCACAGTTTTCCTAAACTGTTCATACCCATC
 
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JMFS073D02+           ACCAAAATTCAAAAAAATTTCAAGAATTATATCACCCATGAGTCCCCCCTCCTACTCCTT
                      ____________________________________________________________
consensus             ACCAAAATTCAAAAAAATTTCAAGAATTATATCACCCATGAGTCCCCCCTCCTACTCCTT