Contig 013117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006E10Sequence471013117 (7)825013799 (5)ref|XP_009619492.1|1e-128PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is
JMFF042H08Sequence629013117 (7)ref|XP_006346158.1|5e-11PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic-li621013799 (5)ref|XP_009619494.1|5e-77PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is
JMFS062F01Sequence603013117 (7)
JMSF015C17Sequence446013117 (7)781013799 (5)ref|XP_009619492.1|2e-131PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is
JMSF032K12Sequence701013117 (7)ref|XP_006346158.1|3e-19PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic-li764013799 (5)ref|XP_009619492.1|9e-130PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is
JMSF036J16Sequence647013117 (7)ref|XP_006346158.1|1e-16PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic-li748013799 (5)ref|XP_009619492.1|1e-125PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is
JMSF038B16Sequence646013117 (7)ref|XP_006346158.1|5e-18PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic-li870015114ref|XP_009619492.1|6e-157PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is

Alignment

This contig is upended


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JMSF032K12+                                                              AAAATGCCG
                      ____________________________________________________________
consensus                                                                AAAATGCCG
 
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JMSF038B16+                                                             AGAACCGGCA
JMSF032K12+           AAAGCCCGAGAAGCAATGCCAACACCAAACCTTGCTCTTTAAAAACTCTAAGAACCGGCA
JMSF036J16+                                                             AGAACCGGCA
                      ____________________________________________________________
consensus             AAAGCCCGAGAAGCAATGCCAACACCAAACCTTGCTCTTTAAAAACTCTAAGAACCGGCA
 
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JMSF038B16+           AAACCTTTGGCCAAAAATTTCTCAAGGCCACAAGAGTTTGGTCCAAAGCCCCGTAGCGCG
JMSF032K12+           AAACCTTTGGCCAAAAATTTCTCAAGGCCACAAGAGTTTGGTCCAAAGCCCCGTAGCGCG
JMFF042H08+                                                TTGGTCCAAAGCCCCGTAGCGCG
JMSF036J16+           AAACCTTTGGCCAAAAATTTCTCAAGGCCACAAGAGTTTGGTCCAAAGCCCCGTAGCGCG
                      ____________________________________________________________
consensus             AAACCTTTGGCCAAAAATTTCTCAAGGCCACAAGAGTTTGGTCCAAAGCCCCGTAGCGCG
 
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JMSF038B16+           CACTGACAACCTCTTCAATAGCAAGCACTCTCCGACAGCCAAACACAAAAACCCCACAAA
JMSF032K12+           CACTGACAACCTCTTCAATAGCAAGCACTCTCCGACAGCCAAACACAAAAACCCCACAAA
JMFF042H08+           CACTGACAACCTCTTCAATAGCAAGCACTCTCCGACAGCCAAACACAAAAACCCCACAAA
JMSF036J16+           CACTGACAACCTCTTCAATAGCAAGCACTCTCCGACAGCCAAACACAAAAACCCCACAAA
JMFS062F01+                                                                    AAA
                      ____________________________________________________________
consensus             CACTGACAACCTCTTCAATAGCAAGCACTCTCCGACAGCCAAACACAAAAACCCCACAAA
 
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JMSF038B16+           CTAAAGCTACCAAAATCAAACCCCTCTTCAACAAAACCTCCACGAGCCCCACATTCACAC
JMSF032K12+           CTAAAGCTACCAAAATCAAACCCCTCTTCAACAAAACCTCCACGAGCCCCACATTCACAC
JMFF006E10+                                                        GCCCCACATTCACAC
JMSF015C17+                                                           CCACATTCACAC
JMFF042H08+           CTAAAGCTACCAAAATCAAACCCCTCTTCAACAAAACCTCCACGAGCCCCACATTCACAC
JMSF036J16+           CTAAAGCTACCAAAATCAAACCCCTCTTCAACAAAACCTCCACGAGCCCCACATTCACAC
JMFS062F01+           CTAAAGCTACCAAAATCAAACCCCTCTTCAACANAACCTCCACGAGCCCCACATTCACAC
                      ____________________________________________________________
consensus             CTAAAGCTACCAAAATCAAACCCCTCTTCAACAAAACCTCCACGAGCCCCACATTCACAC
 
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JMSF038B16+           TCGTTACGCCATCTTCAACATTTCGGCAAGCACAACCGCGACTTACCGATAGCGGGCTCA
JMSF032K12+           TCGTTACGCCATCTTCAACATTTCGGCAAGCACAACCGCGACTTACCGATAGCGGGCTCA
JMFF006E10+           TCGTTACGCCATCTTCAACATTTCGGCGAGCACAACCGCGACTTACCGATAGCGGGCTCA
JMSF015C17+           TCGTTACGCCATCTTCAACATTTCGGCAAGCACAACCGCGACTTACCGATAGCGGGCTCA
JMFF042H08+           TCGTTACGCCATCTTCAACATTTCGGCAAGCACAACCGCGACTTACCGATAGCGGGCTCA
JMSF036J16+           TCGTTACGCCATCTTCAACATTTCGGCAAGCACAACCGCGACTTACCGATAGCGGGCTCA
JMFS062F01+           TCGTTACGCCATCTTCAACATTTCGGCAAGCACAACCGCGACTTACCGATAGCGGGCTCA
                      ____________________________________________________________
consensus             TCGTTACGCCATCTTCAACATTTCGGCAAGCACAACCGCGACTTACCGATAGCGGGCTCA
 
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JMSF038B16+           AACCGAGTCGACTCGGATGGAGCTCGGAGTTGAAGAAAATTCTAGAACCGTACGGTACGG
JMSF032K12+           AACCGAGTCGACTCGGATGGAGCTCGGAGTTGAAGAAAATTCTAGAACCGTACGGTACGG
JMFF006E10+           AACCGAGTCGACTCGGATGGAGCTCGGAGTTGAAGAAAATTCTAGAACCGTACGGTACGG
JMSF015C17+           AACCGAGTCGACTCGGATGGAGCTCGGAGTTGAAGAAAATTCTAGAACCGTACGGTACGG
JMFF042H08+           AACCGAGTCGACTCGGATGGAGCTCGGAGTTGAAGAAAATTCTAGAACCGTACGGTACGG
JMSF036J16+           AACCGAGTCGACTCGGATGGAGCTCGGAGTTGAAGAAAATTCTAGAACCGTACGGTACGG
JMFS062F01+           AACCGAGTCGACTCGGATGGAGCTCGGAGTTGAAGAAAATTCTAGAACCGTACGGTACGG
                      ____________________________________________________________
consensus             AACCGAGTCGACTCGGATGGAGCTCGGAGTTGAAGAAAATTCTAGAACCGTACGGTACGG
 
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JMSF038B16+           AGTAACCCCCTCTGCCGGCGGATTTTGCAGCGCAGCACAGACTCCTGGCAGAGATACCGG
JMSF032K12+           AGTAACCCCCTCTGCCGGCGGATTTTGCAGCGCAGCACAGACTCCTGGCAGAGATACCGG
JMFF006E10+           AGTAACCCCCTCTGCCGGCGGATTTTGCAGCGCAGCACAGACTCCTGGCAGAGATACCGG
JMSF015C17+           AGTAACCCCCTCTGCCGGCGGATTTTGCAGCGCAGCACAGACTCCTGGCAGAGATACCGG
JMFF042H08+           AGTAACCCCCTCTGCCGGCGGATTTTGCAGCGCAGCACAGACTCCTGGCAGAGATACCGG
JMSF036J16+           AGTAACCCCCTCTGCCGGCGGATTTTGCAGCGCAGCACAGACTCCTGGCAGAGATACCGG
JMFS062F01+           AGTAACCCCCTCTGCCGGCGGATTTTGCAGCGCAGCACAGACTCCTGGCAGAGATACCGG
                      ____________________________________________________________
consensus             AGTAACCCCCTCTGCCGGCGGATTTTGCAGCGCAGCACAGACTCCTGGCAGAGATACCGG
 
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JMSF038B16+           CGGAAATCCCGAACCGACGGCTGCGAAGAACTCTGAATGCGGATCGATTCAAGAGATAGG
JMSF032K12+           CGGAAATCCCGAACCGACGGCTGCGAAGAACTCTGAATGCGGATCGATTCAAGAGATAGG
JMFF006E10+           CGGAAATCCCGAACCGACGGCTGCGAAGAACTCTGAATGCGGATCGATTCAAGAGATAGG
JMSF015C17+           CGGAAATCCCGAACCGACGGCTGCGAAGAACTCTGAATGCGGATCGATTCAAGAGATAGG
JMFF042H08+           CGGAAATCCCGAACCGACGGCTGCGAAGAACTCTGAATGCGGATCGATTCAAGAGATAGG
JMSF036J16+           CGGAAATCCCGAACCGACGGCTGCGAAGAACTCTGAATGCGGATCGATTCAAGAGATAGG
JMFS062F01+           CGGAAATCCCGAACCGACGGCTGCGAAGAACTCTGAATGCGGATCGATTCAAGAGATAGG
                      ____________________________________________________________
consensus             CGGAAATCCCGAACCGACGGCTGCGAAGAACTCTGAATGCGGATCGATTCAAGAGATAGG
 
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JMSF038B16+           GCTCAAGAGCCGCTACTGCTTCCATGTGGATTCGCAGAAACTATGCGTGAAATTAGAAAA
JMSF032K12+           GCTCAAGAGCCGCTACTGCTTCCATGTGGATTCGCAGAAACTATGCGTGAAATTAGAAAA
JMFF006E10+           GCTCAAGAGCCGCTACTGCTTCCATGTGGATTCGCAGAAACTATGCGTGAAATTAGAAAA
JMSF015C17+           GTTCAAGAGCCGCTACTGCTTCCATGTGGATTCGCAGAAACTATGCGTGAAATTAGAAAA
JMFF042H08+           GCTCAAGAGCCGCTACTGCTTCCATGTGGATTCGCAGAAACTATGCGTGAAATTAGAAAA
JMSF036J16+           GCTCAAGAGCCGCTACTGCTTCCATGTGGATTCGCAGAAACTATGCGTGAAATTAGAAAA
JMFS062F01+           GCTCAAGAGCCGCTACTGCTTCCATGTGGATTCGCAGAAACTATGCGTGAAATTAGAAAA
                      ____________________________________________________________
consensus             GCTCAAGAGCCGCTACTGCTTCCATGTGGATTCGCAGAAACTATGCGTGAAATTAGAAAA
 
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JMSF038B16+           ACAAGTGGAAATTCAATCCAAAATTCCAAATAATATACGAGTAGATAGAGCGGGAAGGGT
JMSF032K12+           ACAAGTGGAAATTCAATCCAAAATTCCAAATAATATACGAGTAGATAGAGCGGGAAGGGT
JMFF006E10+           ACAAGTGGAAATTCAATCCAAAATTCCAAATAATATACGAGTAGATAGAGCGGGAAGGGT
JMSF015C17+           ACAAGTGGAAATTCAATCCAAAATTCCAAATAATATACGAGTAGATAGAGCGGGAAGGGT
JMFF042H08+           ACAAGTGGAAATTCAATCCAAAATTCCAAATAATATACGAGTAGATAGAGCGGGAAGGGT
JMSF036J16+           ACAAGTGGAAATTCAATCCAAAATTCCAAATAATATACGAGTAGATAGAGCGGGAAGGGT
JMFS062F01+           ACAAGTGGAAATTCAATCCAAAATTCCAAATAATATACGAGTAGATAGAGCGGGAAGGGT
                      ____________________________________________________________
consensus             ACAAGTGGAAATTCAATCCAAAATTCCAAATAATATACGAGTAGATAGAGCGGGAAGGGT
 
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JMSF038B16+           AGAGATTAGATCTTCTTGCGGAGCTTGAAGAGATGGAAACGTGCAGACGAAGAGCTCATC
JMSF032K12+           AGAGATTAGATCTTCTTGCGGAGCTTGAAGAGATGGAAACGTGCAGACGAAGAGCTCATC
JMFF006E10+           AGAGATTAGATCTTCTTGCGGAGCTTGAAGAGATGGAAACGTGCAGACGAAGAGCTCATC
JMSF015C17+           AGAGATTAGATCTTCTTGCGGAGCTTGAAGAGATGGAAACGTGCAGACGAAGAGCTCATC
JMFF042H08+           AGAGATTAGATCTTCTTGCGGAGCTTGAAGAGATGGAAACGTGCAGACGAAGAGCTCATC
JMSF036J16+           AGAGATTAGATCTTCTTGCGGAGCTTGAAGAGATGGAAACGTGCAGACGAAGAGCTCATC
JMFS062F01+           AGAGATTAGATCTTCTTGCGGAGCTTGAAGAGATGGAAACGTGCAGACGAAGAGCTCATC
                      ____________________________________________________________
consensus             AGAGATTAGATCTTCTTGCGGAGCTTGAAGAGATGGAAACGTGCAGACGAAGAGCTCATC
 
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JMSF038B16+           CTGCTCGGCCTCTACTGCGAGCTGCGTGGAC                             
JMSF032K12+           CTGCTCGGCCTCTACTGCGAGCTGCGTGGAC                             
JMFF006E10+           CTGCTCGGCCTCTACTGCGAGCTGCGTGGACGACTC                        
JMSF015C17+           CTGCTCGGCCTC                                                
JMFF042H08+           CTGCTCGGCCTCTACTGCGAGCTGCGTGGACGACTC                        
JMSF036J16+           CTGCTCGGCCTCTACTGCGAGCTGCGTGGACGACTC                        
JMFS062F01+           CTGCTCGGCCTCTACTGCGAGCTGCGTGGACGACTCAATTTCTTTGCTCGTGTGCTTCTG
                      ____________________________________________________________
consensus             CTGCTCGGCCTCTACTGCGAGCTGCGTGGACGACTCAATTTCTTTGCTCGTGTGCTTCTG
 
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JMFS062F01+           CCAAAAGCACAGGTTTCAACTTGCAGGTGTGAAATGACCGGAGTATCCCCCGCTTCTCTG
                      ____________________________________________________________
consensus             CCAAAAGCACAGGTTTCAACTTGCAGGTGTGAAATGACCGGAGTATCCCCCGCTTCTCTG