Contig 013105:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+                                                            GTGAATTGGAC
JMFS044A09+                                                 GTTTCACTCAAGTGAATTGGAC
                      ____________________________________________________________
consensus                                                   GTTTCACTCAAGTGAATTGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           CCCTTCNTACTTTCCAGCCGCTGCTTGATGATACAGGTGAACTGGAACCATCAGGAAGAA
JMFS044A09+           CCCTTCCTACTTTCCAGCCGCTGCTTGATGATACAGGTGAACTGGAACCATCAGGAAGAA
                      ____________________________________________________________
consensus             CCCTTCCTACTTTCCAGCCGCTGCTTGATGATACAGGTGAACTGGAACCATCAGGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           GTTCATGACAATATTTTGACAAAGTCTTGTACCCCATGTCTCCAAGATTGATCAATCCAG
JMFS044A09+           GTTCATGACAATATTTTGACAAAGTCTTGTACCCCATGTCTCCAAGATTGATCAATCCAG
                      ____________________________________________________________
consensus             GTTCATGACAATATTTTGACAAAGTCTTGTACCCCATGTCTCCAAGATTGATCAATCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           AAGCAAGCTGTTTACTTGACTCCATGGCATATCTAGCGACCAGATTTCCATTACCAGGTG
JMFS044A09+           AAGCAAGCTGTTTACTTGACTCCATGGCATATCTAGCGACCAGATTTCCATTACCAGGTG
                      ____________________________________________________________
consensus             AAGCAAGCTGTTTACTTGACTCCATGGCATATCTAGCGACCAGATTTCCATTACCAGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           ATGTAGATGGGCTAACACCCGGAGAAGGACTAAGACTTTGTGGACTTAATCGTCCTGTGT
JMFS044A09+           ATGTAGATGGGCTAACACCCGGAGAAGGACTAAGACTTTGTGGACTTAATCGTCCTGTGT
                      ____________________________________________________________
consensus             ATGTAGATGGGCTAACACCCGGAGAAGGACTAAGACTTTGTGGACTTAATCGTCCTGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           TTGATATCATTGGATTATTTGACGAATAAGCTAGCCACCTTGGACCTACAGCCATTGGAC
JMFS044A09+           TTGATATCATTGGATTATTTGACGAATAAGCTAGCCACCTTGGACCTACAGCCATTGGAC
                      ____________________________________________________________
consensus             TTGATATCATTGGATTATTTGACGAATAAGCTAGCCACCTTGGACCTACAGCCATTGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           CATAGCCAATATTGACTCCAGTAAAACCTTGGCCCCCCAACTGAGGTACAGGATAAGTAA
JMFS044A09+           CATAGCCAATATTGACTCCAGTAAAACCTTGGCCCCCCAACTGAGGTACAGGATAAGTAA
                      ____________________________________________________________
consensus             CATAGCCAATATTGACTCCAGTAAAACCTTGGCCCCCCAACTGAGGTACAGGATAAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           GCACAGAGAACTTATTCTCTAGAGTAAGGGCATCAAAGCAATATATCTGTGTTGCAAGAC
JMFS044A09+           GCACAGAGAACTTATTCTCTAGAGTAAGGGCATCAAAGCAATATATCTGTGTTGCAAGAC
                      ____________________________________________________________
consensus             GCACAGAGAACTTATTCTCTAGAGTAAGGGCATCAAAGCAATATATCTGTGTTGCAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           CAACGGCAACTATCTGTGGACTGGATCTAACCATAAAAATAGTAGACCTGAATCGTAAAC
JMFS044A09+           CAACGGCAACTATCTGTGGACTGGATCTAACCATAAAAATAGTAGACCTGAATCGTAAAC
                      ____________________________________________________________
consensus             CAACGGCAACTATCTGTGGACTGGATCTAACCATAAAAATAGTAGACCTGAATCGTAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           TGTGAACATAATTGTGGGACTTTAGAGAATAAAATCGAAGTGTAGTAGGCGAGTTTACAA
JMFS044A09+           TGTGAACATAATTGTGGGACTTTAGAGAATAAAATCGAAGTGTAGTAGGCGAGTTTACAA
                      ____________________________________________________________
consensus             TGTGAACATAATTGTGGGACTTTAGAGAATAAAATCGAAGTGTAGTAGGCGAGTTTACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043H08+           AGTTCACT                                                    
JMFS044A09+           AGTTCACTGCTTGAGGCTCAATAAAGCCATCCCTCCCACTTTGTGCTGGAATGGATTCAA
                      ____________________________________________________________
consensus             AGTTCACTGCTTGAGGCTCAATAAAGCCATCCCTCCCACTTTGTGCTGGAATGGATTCAA