Contig 013105:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS043H08Sequence559013105 (2)ref|XP_009798132.1|2e-87PREDICTED: LOW QUALITY PROTEIN: autophagy-related protein 18h-like, partial [Ni
JMFS044A09Sequence622013105 (2)ref|XP_004230156.1|4e-98PREDICTED: autophagy-related protein 18h-like [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS043H08+ GTGAATTGGAC
JMFS044A09+ GTTTCACTCAAGTGAATTGGAC
                      ____________________________________________________________
consensus GTTTCACTCAAGTGAATTGGAC
 
. : . : . : . : . : . :
JMFS043H08+ CCCTTCNTACTTTCCAGCCGCTGCTTGATGATACAGGTGAACTGGAACCATCAGGAAGAA
JMFS044A09+ CCCTTCCTACTTTCCAGCCGCTGCTTGATGATACAGGTGAACTGGAACCATCAGGAAGAA
                      ____________________________________________________________
consensus CCCTTCCTACTTTCCAGCCGCTGCTTGATGATACAGGTGAACTGGAACCATCAGGAAGAA
 
. : . : . : . : . : . :
JMFS043H08+ GTTCATGACAATATTTTGACAAAGTCTTGTACCCCATGTCTCCAAGATTGATCAATCCAG
JMFS044A09+ GTTCATGACAATATTTTGACAAAGTCTTGTACCCCATGTCTCCAAGATTGATCAATCCAG
                      ____________________________________________________________
consensus GTTCATGACAATATTTTGACAAAGTCTTGTACCCCATGTCTCCAAGATTGATCAATCCAG
 
. : . : . : . : . : . :
JMFS043H08+ AAGCAAGCTGTTTACTTGACTCCATGGCATATCTAGCGACCAGATTTCCATTACCAGGTG
JMFS044A09+ AAGCAAGCTGTTTACTTGACTCCATGGCATATCTAGCGACCAGATTTCCATTACCAGGTG
                      ____________________________________________________________
consensus AAGCAAGCTGTTTACTTGACTCCATGGCATATCTAGCGACCAGATTTCCATTACCAGGTG
 
. : . : . : . : . : . :
JMFS043H08+ ATGTAGATGGGCTAACACCCGGAGAAGGACTAAGACTTTGTGGACTTAATCGTCCTGTGT
JMFS044A09+ ATGTAGATGGGCTAACACCCGGAGAAGGACTAAGACTTTGTGGACTTAATCGTCCTGTGT
                      ____________________________________________________________
consensus ATGTAGATGGGCTAACACCCGGAGAAGGACTAAGACTTTGTGGACTTAATCGTCCTGTGT
 
. : . : . : . : . : . :
JMFS043H08+ TTGATATCATTGGATTATTTGACGAATAAGCTAGCCACCTTGGACCTACAGCCATTGGAC
JMFS044A09+ TTGATATCATTGGATTATTTGACGAATAAGCTAGCCACCTTGGACCTACAGCCATTGGAC
                      ____________________________________________________________
consensus TTGATATCATTGGATTATTTGACGAATAAGCTAGCCACCTTGGACCTACAGCCATTGGAC
 
. : . : . : . : . : . :
JMFS043H08+ CATAGCCAATATTGACTCCAGTAAAACCTTGGCCCCCCAACTGAGGTACAGGATAAGTAA
JMFS044A09+ CATAGCCAATATTGACTCCAGTAAAACCTTGGCCCCCCAACTGAGGTACAGGATAAGTAA
                      ____________________________________________________________
consensus CATAGCCAATATTGACTCCAGTAAAACCTTGGCCCCCCAACTGAGGTACAGGATAAGTAA
 
. : . : . : . : . : . :
JMFS043H08+ GCACAGAGAACTTATTCTCTAGAGTAAGGGCATCAAAGCAATATATCTGTGTTGCAAGAC
JMFS044A09+ GCACAGAGAACTTATTCTCTAGAGTAAGGGCATCAAAGCAATATATCTGTGTTGCAAGAC
                      ____________________________________________________________
consensus GCACAGAGAACTTATTCTCTAGAGTAAGGGCATCAAAGCAATATATCTGTGTTGCAAGAC
 
. : . : . : . : . : . :
JMFS043H08+ CAACGGCAACTATCTGTGGACTGGATCTAACCATAAAAATAGTAGACCTGAATCGTAAAC
JMFS044A09+ CAACGGCAACTATCTGTGGACTGGATCTAACCATAAAAATAGTAGACCTGAATCGTAAAC
                      ____________________________________________________________
consensus CAACGGCAACTATCTGTGGACTGGATCTAACCATAAAAATAGTAGACCTGAATCGTAAAC
 
. : . : . : . : . : . :
JMFS043H08+ TGTGAACATAATTGTGGGACTTTAGAGAATAAAATCGAAGTGTAGTAGGCGAGTTTACAA
JMFS044A09+ TGTGAACATAATTGTGGGACTTTAGAGAATAAAATCGAAGTGTAGTAGGCGAGTTTACAA
                      ____________________________________________________________
consensus TGTGAACATAATTGTGGGACTTTAGAGAATAAAATCGAAGTGTAGTAGGCGAGTTTACAA
 
. : . : . : . : . : . :
JMFS043H08+ AGTTCACT
JMFS044A09+ AGTTCACTGCTTGAGGCTCAATAAAGCCATCCCTCCCACTTTGTGCTGGAATGGATTCAA
                      ____________________________________________________________
consensus AGTTCACTGCTTGAGGCTCAATAAAGCCATCCCTCCCACTTTGTGCTGGAATGGATTCAA