Contig 013104:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS043E07Sequence619013104 (2)ref|XP_006351888.1|4e-05PREDICTED: DIS3-like exonuclease 2-like [Solanum tuberosum]
JMFS107H01Sequence615013104 (2)ref|XP_008385572.1|2e-09PREDICTED: DIS3-like exonuclease 2 isoform X2 [Malus domestica]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+                                                         GCATCAACATCTTC
                      ____________________________________________________________
consensus                                                           GCATCAACATCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           AGTCAACCAGTGTCTAGTAAAGCATTTCCTCTGAGCAAATGCATTATCCGGTGTGGACAA
                      ____________________________________________________________
consensus             AGTCAACCAGTGTCTAGTAAAGCATTTCCTCTGAGCAAATGCATTATCCGGTGTGGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           CATTAGTTCTCCATTAGCATCATTGCAAAGACTGGGCTGTGGGCAAGAGCCTGAAAATAC
JMFS043E07+                                                    GGCAAGAGCCTGAAAATAC
                      ____________________________________________________________
consensus             CATTAGTTCTCCATTAGCATCATTGCAAAGACTGGGCTGTGGGCAAGAGCCTGAAAATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           TCTTCCAGTGGCACTCGATGAAATCATCTCCTGTCCTACAAGGCCTTGGTACCCCTTTAC
JMFS043E07+           TCTTCCAGTGGCACTCGATGAAATCATCTCCTGTCCTACAAGGCCTTGGTACCCCTTTAC
                      ____________________________________________________________
consensus             TCTTCCAGTGGCACTCGATGAAATCATCTCCTGTCCTACAAGGCCTTGGTACCCCTTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           TGTTTGTTCATTCAGATGCACAATTGGAAGTGAACTAAAAGCAACATCTGATGCTCTTGG
JMFS043E07+           TGTTTGTTCATTCAGATGCACAATTGGAAGTGAACTAAAAGCAACATCTGATGCTCTTGG
                      ____________________________________________________________
consensus             TGTTTGTTCATTCAGATGCACAATTGGAAGTGAACTAAAAGCAACATCTGATGCTCTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           GAATTGGTGTTCTCTAAGCTCTCCATTATTTGAAATGTTTTCAACTCCTGAACGAAGAGG
JMFS043E07+           GAATTGGTGTTCTCTAAGCTCTCCATTATTTGAAATGTTTTCAACTCCTGAACGAAGAGG
                      ____________________________________________________________
consensus             GAATTGGTGTTCTCTAAGCTCTCCATTATTTGAAATGTTTTCAACTCCTGAACGAAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           AGAACTCTGCTTGCCACGCCTGGATCGACGCTTCTTCTTCTTATCCTTGTTATCGACAGC
JMFS043E07+           AGAACTCTGCTTGCCACGCCTGGATCGACGCTTCTTCTTCTTATCCTTGTTATCGACAGC
                      ____________________________________________________________
consensus             AGAACTCTGCTTGCCACGCCTGGATCGACGCTTCTTCTTCTTATCCTTGTTATCGACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           GACAGCTTCAACTGTCTGTGCTTGACTGTGAATAGACTCAACCAGGACACCCATGTCTCG
JMFS043E07+           GACAGCTTCAACTGTCTGTGCTTGACTGTGAATAGACTCAACCAGGACACCCATGTCTCG
                      ____________________________________________________________
consensus             GACAGCTTCAACTGTCTGTGCTTGACTGTGAATAGACTCAACCAGGACACCCATGTCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           AGAACAAATCAGAAGAACTCAAGAACCGCAAAAGGGAAATAAAATTTTTTTTAAAAAAAA
JMFS043E07+           AGAACAAATCAGAAGAACTCAAGAACCGCAAAAGGGAAATAAAATTTTTTTTAAAAAAAA
                      ____________________________________________________________
consensus             AGAACAAATCAGAAGAACTCAAGAACCGCAAAAGGGAAATAAAATTTTTTTTAAAAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           CAGTAAAGCAAAAACCCAAGCAAG-AAAAAACCCTATAAGCTTGCGATAGGGGAATCGAG
JMFS043E07+           CAGTAAAGCAAAAACCCAAGCAAGAAAAAAACCCTATAAGCTTGCGATAGGGGAATCGAG
                      ____________________________________________________________
consensus             CAGTAAAGCAAAAACCCAAGCAAGAAAAAAACCCTATAAGCTTGCGATAGGGGAATCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           CAGCTTCCGGTTTATGAAAAAAATTAAACGGAAGAAACCCGATTTCGAGGATTCTTAACA
JMFS043E07+           CAGCTTCCGGTTTATGAAAAAAATTAAACGGAAGAAACCCGATTTCGAGGATTCTTAACA
                      ____________________________________________________________
consensus             CAGCTTCCGGTTTATGAAAAAAATTAAACGGAAGAAACCCGATTTCGAGGATTCTTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS107H01+           AA                                                          
JMFS043E07+           AAGAAGAAACGGTAATCCGAGAAACAGAGGGAAGAAATCACGTATAGAGATTTATATATA
                      ____________________________________________________________
consensus             AAGAAGAAACGGTAATCCGAGAAACAGAGGGAAGAAATCACGTATAGAGATTTATATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043E07+           TAGATATAGATATACGGAGTATAAAATACGTGCTTTAAAGAGAGAGAGAGGGAGAGAGAA
                      ____________________________________________________________
consensus             TAGATATAGATATACGGAGTATAAAATACGTGCTTTAAAGAGAGAGAGAGGGAGAGAGAA