| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS038C10 | Sequence | 643 | 013101 (6) | emb|CDP19952.1| | 7e-93 | unnamed protein product [Coffea canephora] | |||||
| JMFS038D08 | Sequence | 654 | 013101 (6) | emb|CDP19952.1| | 1e-84 | unnamed protein product [Coffea canephora] | |||||
| JMFS091A07 | Sequence | 498 | 013101 (6) | ref|XP_004288379.1| | 4e-16 | PREDICTED: splicing factor 3B subunit 3-like [Fragaria vesca subsp. vesca] | |||||
| JMFS155F09 | Sequence | 548 | 013101 (6) | ||||||||
| JMSF007C18 | Sequence | 300 | 007764 (6) | ref|XP_009797333.1| | 1e-05 | PREDICTED: splicing factor 3B subunit 3-like [Nicotiana sylvestris] | 748 | 013101 (6) | gb|ADE75875.1| | 9e-53 | unknown [Picea sitchensis] |
| JMSF014M13 | Sequence | 247 | 007764 (6) | ref|XP_009797333.1| | 1e-11 | PREDICTED: splicing factor 3B subunit 3-like [Nicotiana sylvestris] | 783 | 013101 (6) | ref|NP_001140370.1| | 3e-75 | uncharacterized protein LOC100272422 [Zea mays] gb|ACF83686.1| unknown [Zea mays |
This contig is upended
. : . : . : . : . : . :
JMFS155F09- ACTTTGTAATTTATAGCACATCTAGAAAAGAGA
rJMSF007C18- GA
____________________________________________________________
consensus ACTTTGTAATTTATAGCACATCTAGAAAAGAGA
. : . : . : . : . : . :
JMFS155F09- GCATCGTTCAAACATTGAAAATGAAAATTGTATAGCAGCCTACTCAAG-TATGCAGAAGC
rJMSF007C18- GCATCGTTCAAACATTGAAAATGAAAATTGTATAGCAGCCTACTCAAGTTATGCAGAAGC
____________________________________________________________
consensus GCATCGTTCAAACATTGAAAATGAAAATTGTATAGCAGCCTACTCAAGTTATGCAGAAGC
. : . : . : . : . : . :
JMFS155F09- TGAAAATGGAACATCAGTGTTACAAATTTTGCAGGGCTGAATAATTATGCATGAAAATTT
JMFS091A07+ GCAGGGCTGAATAATTATGCATGAAAATTT
rJMSF007C18- TGAAAATGGAACATCAGTGTTACAAATTTTGCAGGGCTGAATAATTATGCATGAAAATTT
rJMSF014M13- CAAATTTTGCAGGGCTGAATAATTATGCATGAAAATTT
____________________________________________________________
consensus TGAAAATGGAACATCAGTGTTACAAATTTTGCAGGGCTGAATAATTATGCATGAAAATTT
. : . : . : . : . : . :
JMFS155F09- CGAAAAGAGCCAATTACACAAAGGTGATTCCTAGTTGATCTGATACAAAATAATTACAAC
JMFS091A07+ CGAAAAGAGCCAATTACACAAAGGTGATTCCTAGTTGATCTGATACAAAATAATTACAAC
rJMSF007C18- CGAAAAGAGCCAATTACACAAAGGTGATTCCTAGTTGATCTGATACAAAATAATTACAAC
rJMSF014M13- CGAAAAGAGCCAATTACACAAAGGTGATTCCTAGTTGATCTGATACAAAATAATTACAAC
____________________________________________________________
consensus CGAAAAGAGCCAATTACACAAAGGTGATTCCTAGTTGATCTGATACAAAATAATTACAAC
. : . : . : . : . : . :
JMFS155F09- AGAAAGAAATGAGGGGAGCCATGATGTTAAAGGCGATAATGTGATAATTTCTACTCTGCA
JMFS091A07+ AGAAAGAAATGAGGGGAGCCATGATGTTAAAGGCGATAATGTGATAATTTCTACTCTGCA
rJMSF007C18- AGAAAGAAATGAGGGGAGCCATGATGTTAAAGGCGATAATGTGATAATTTCTACTCTGCA
rJMSF014M13- AGAAAGAAATGAGGGGAGCCATGATGTTAAAGGCGATAATGTGATAATTTCTACTCTGCA
____________________________________________________________
consensus AGAAAGAAATGAGGGGAGCCATGATGTTAAAGGCGATAATGTGATAATTTCTACTCTGCA
. : . : . : . : . : . :
JMFS155F09- GAGTGCAGTACTGTTCTTGGTATCCATCATCTGTGCTCACTTTCCTCCTGCAACTGCATT
JMFS091A07+ GAGTGCAGTACTGTTCTTGGTATCCATCATCTGTGCTCACTTTCCTCCTGCAACTGCATT
rJMSF007C18- GAGTGCAGTACTGTTCTTGGTATCCATCATCTGTGCTCACTTTCCTCCTGCAACTGCATT
rJMSF014M13- GAGTGCAGTACTGTTCTTGGTATCCATCATCTGTGCTCACTTTCCTCCTGCAACTGCATT
JMFS038D08+ CAGTACTGTTCTTGGTATCCATCATCTGTGCTCACTTTCCTCCTGCAACTGCATT
JMFS038C10+ TGGTATCCATCATCTGTGCTCACTTTCCTCCTGCAACTGCATT
____________________________________________________________
consensus GAGTGCAGTACTGTTCTTGGTATCCATCATCTGTGCTCACTTTCCTCCTGCAACTGCATT
. : . : . : . : . : . :
JMFS155F09- CTTCGATAAAACGGATGCATCAGCCTCAGGCTCGTATGCAGCACACTCCATCATCTTATA
JMFS091A07+ CTTCGATAAAACGGATGCATCAGCCTCAGGCTCGTATGCAGCACACTCCATCATCTTATA
rJMSF007C18- CTTCGATAAAACGGATGCATCAGCCTCAGGCTCGTATGCAGCACACTCCATCATCTTATA
rJMSF014M13- CTTCGATAAAACGGATGCATCAGCCTCAGGCTCGTATGCAGCACACTCCATCATCTTATA
JMFS038D08+ CTTCGATAAAACGGATGCATCAGCCTCAGGCTCGTATGCAGCACACTCCATCATCTTATA
JMFS038C10+ CTTCGATAAAACGGATGCATCAGCCTCAGGCTCGTATGCAGCACACTCCATCATCTTATA
____________________________________________________________
consensus CTTCGATAAAACGGATGCATCAGCCTCAGGCTCGTATGCAGCACACTCCATCATCTTATA
. : . : . : . : . : . :
JMFS155F09- GTCACCATTAGACGTAGTTTAATAGAAACGCAAACCATGATCTATGTTGAAGAAGATTTA
JMFS091A07+ GTCACCATTAGACGTAGTTTAATAGAAACGCAAACCATGATCTATGTTGAAGAAGATTTA
rJMSF007C18- GTCACCATTAGACGTAGTTTAATAGAAACGCAAACCATGATCTATGTTGAAGAAGATTTA
rJMSF014M13- GTCACCATTAGACGTAGTTTAATAGAAACGCAAACCATGATCTATGTTGAAGAAGATTTA
JMFS038D08+ GTCACCATTAGACGTAGTTTAATAGAAACGCAAACCATGATCTATGTTGAAGAAGATTTA
JMFS038C10+ GTCACCATTAGACGTAGTTTAATAGAAACGCAAACCATGATCTATGTTGAAGAAGATTTA
____________________________________________________________
consensus GTCACCATTAGACGTAGTTTAATAGAAACGCAAACCATGATCTATGTTGAAGAAGATTTA
. : . : . : . : . : . :
JMFS155F09- TCTCTCATATGATTTTGTTCCTTATTTCTTCCAGTTTCTTCAAAATCTCCCCTGGAGTTC
JMFS091A07+ TCTCTCATATGATTTTGTTCCTTATTTCTTCCAGTTTCTTCAAAATCTCCCCTGGAGTTC
rJMSF007C18- TCTCTCATATGATTTTGTTCCTTATTTCTTCCAGTTTCTTCAAAATCTCCCCTGGAGTTC
rJMSF014M13- TCTCTCATATGATTTTGTTCCTTATTTCTTCCAGTTTCTTCAAAATCTCCCCTGGAGTTC
JMFS038D08+ TCTCTCATATGATTTTGTTCCTTATTTCTTCCAGTTTCTTCAAAATCTCCCCTGGAGTTC
JMFS038C10+ TCTCTCATATGATTTTGTTCCTTATTTCTTCCAGTTTCTTCAAAATCTCCCCTGGAGTTC
____________________________________________________________
consensus TCTCTCATATGATTTTGTTCCTTATTTCTTCCAGTTTCTTCAAAATCTCCCCTGGAGTTC
. : . : . : . : . : . :
JMFS155F09- TATCTAGCTCATCCGCAATTTTGCGCTGCATGTCCA
JMFS091A07+ TATCTAGCTCATCCGCAATTTTGCGCTGCATGTCCATAGGCAAAGTTGGGAACTGTTCGC
rJMSF007C18- TATCTAGCTCATCCGCAATTTTGCGCTGCATGTCCATAGGCAAAGTTGGGAACTGTTCGC
rJMSF014M13- TATCTAGCTCATCCGCAATTTTGCGCTGCATGTCCATAGGCAAAGTTGGGAACTGTTCGC
JMFS038D08+ TATCTAGCTCATCCGCAATTTTGCGCTGCATGTCCATAGGCAAAGTTGGGAACTGTTCGC
JMFS038C10+ TATCTAGCTCATCCGCAATTTTGCGCTGCATGTCCATAGGCAAAGTTGGGAACTGTTCGC
____________________________________________________________
consensus TATCTAGCTCATCCGCAATTTTGCGCTGCATGTCCATAGGCAAAGTTGGGAACTGTTCGC
. : . : . : . : . : . :
JMFS091A07+ ACAAGTCTCCATCAATCACATCCTTGACAGGGAAGTATGCAGATCTGT
rJMSF007C18- ACAAGTCTCCATCAATCACATCCTTGACAGGGAAGTATGCAGATCTGTAGCCCATATGGT
rJMSF014M13- ACAAGTCTCCATCAATCACATCCTTGACAGGGAAGTATGCAGATCTGTAGCCCATATGGT
JMFS038D08+ ACAAGTCTCCATCAATCACATCCTTGACAGGGAAGTATGCAGATCTGTAGCCCATATGGT
JMFS038C10+ ACAAGTCTCCATCAATCACATCCTTGACAGGGAAGTATGCAGATCTGTAGCCCATATGGT
____________________________________________________________
consensus ACAAGTCTCCATCAATCACATCCTTGACAGGGAAGTATGCAGATCTGTAGCCCATATGGT
. : . : . : . : . : . :
rJMSF007C18- CTCTGCCACACAATGGTGGGTTCTCCTGCCTCAAATGCATCTCCAAATGAGAGAAGAAGT
rJMSF014M13- CTCTGCCACACAATGGTGGGTTCTCCTGCCTCAAATGCATCTCCAAATGAGAGAAGAAGT
JMFS038D08+ CTCTGCCACACAATGGTGGGTTCTCCTGCCTCAAATGCATCTCCAAATGAGAGAAGAAGT
JMFS038C10+ CTCTGCCACACAATGGTGGGTTCTCCTGCCTCAAATGCATCTCCAAATGAGAGAAGAAGT
____________________________________________________________
consensus CTCTGCCACACAATGGTGGGTTCTCCTGCCTCAAATGCATCTCCAAATGAGAGAAGAAGT
. : . : . : . : . : . :
rJMSF007C18- CAACATCATCCCTAGAGGTAAATGGAAGCATTGCACCTACACTCCCCATANCACTCCCAT
rJMSF014M13- CAACATCATCCCTAGAGGTAAATGGAAGCATTGCACCTACACTCCCCATAACACTCCCAT
JMFS038D08+ CAACATCATCCCTAGAGGTAAATGGAAGCATTGCACCTACACTCCCCATAACACTCCCAT
JMFS038C10+ CAACATCATCCCTAGAGGTAAATGGAAGCATTGCACCTACACTCCCCATAACACTCCCAT
____________________________________________________________
consensus CAACATCATCCCTAGAGGTAAATGGAAGCATTGCACCTACACTCCCCATAACACTCCCAT
. : . : . : . : . : . :
rJMSF007C18- AGATGACGCACTCCCCACCTCCCGGA
rJMSF014M13- AGATGACGCACTCCCCACCTCCCGGAATAAGTGATGCCCTTTGCAGGCAGCTAACCACAT
JMFS038D08+ AGATGACGCACTCCCCACCTCCCGGAATAAGTGATGCCCTTTGCAGGCAGCTAACCACAT
JMFS038C10+ AGATGACGCACTCCCCACCTCCCGGAATAAGTGATGCCCTTTGCAGGCAGCTAACCACAT
____________________________________________________________
consensus AGATGACGCACTCCCCACCTCCCGGAATAAGTGATGCCCTTTGCAGGCAGCTAACCACAT
. : . : . : . : . : . :
rJMSF014M13- CACCAACATGAAACTGCACAATCTCTTCGACCTTGTTGGGAGCTCCATTCAGCTTT
JMFS038D08+ CACCAACATGAAACTGCACAATCTCTTCGACCTTGTTGGGAGCTCCATTCAGCTTTCCCT
JMFS038C10+ CACCAACATGAAACTGCACAATCTCTTCGACCTTGTTGGGAGCTCCATTCAGCTTTCCCT
____________________________________________________________
consensus CACCAACATGAAACTGCACAATCTCTTCGACCTTGTTGGGAGCTCCATTCAGCTTTCCCT
. : . : . : . : . : . :
JMFS038D08+ GTTCCCATTTTATCTTCCCGCCAG-TGGATCTTCTTCAATCTCATCTGACACATCCTGTG
JMFS038C10+ GTTCCCATTTTATCTTCCCGCCAGTTGGATCTTCTTCAATCTCATCTGACACATCCTGTG
____________________________________________________________
consensus GTTCCCATTTTATCTTCCCGCCAGTTGGATCTTCTTCAATCTCATCTGACACATCCTGTG