Contig 013099:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS017F07Sequence646013099 (2)ref|XP_009595764.1|1e-93PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Nicotiana tomento
JMFS032F07Sequence535013099 (2)ref|XP_002324903.2|8e-38GYMNOS family protein [Populus trichocarpa] gb|EEF03468.2| GYMNOS family protein

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+                                                     GTCAGTCATCGATGACAT
                      ____________________________________________________________
consensus                                                       GTCAGTCATCGATGACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           TTGACGATGGAAGTTGTTCACTTTTGTCTTTAGACGAGGAAGAGTCTGGTAAGCTTTGAC
                      ____________________________________________________________
consensus             TTGACGATGGAAGTTGTTCACTTTTGTCTTTAGACGAGGAAGAGTCTGGTAAGCTTTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           AAACTCATTCTCCGGCACCCAAGAACTATGAAGATAAGAGAATCCTTTCCACTTAACAAG
                      ____________________________________________________________
consensus             AAACTCATTCTCCGGCACCCAAGAACTATGAAGATAAGAGAATCCTTTCCACTTAACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           ATACTGTTTCACAAATATTTGCTTTGATCCCAGTTTTGAAGCATCACTATCATCAGCAAT
                      ____________________________________________________________
consensus             ATACTGTTTCACAAATATTTGCTTTGATCCCAGTTTTGAAGCATCACTATCATCAGCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           AGTTGGGCGTGTTTCACAATCCAATATTTTCTCAATATCATTGAGAGGGCTCACACATTC
                      ____________________________________________________________
consensus             AGTTGGGCGTGTTTCACAATCCAATATTTTCTCAATATCATTGAGAGGGCTCACACATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           AGGGCACTTCCAGCTGCTAGGAAAAGGGGCTCTCATAGGTTGAAGCAAACACTTTGGATG
JMFS032F07+                ACTTCCAGCTGCTAGGAAAAGGGGCTCTCATAGGTTGAAGCAAACACTTTGGATG
                      ____________________________________________________________
consensus             AGGGCACTTCCAGCTGCTAGGAAAAGGGGCTCTCATAGGTTGAAGCAAACACTTTGGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           ATATGCATAAGTACATGTTTCACAGTTCAAGAGATTCTCATCTCCACCACAAGCTTGACA
JMFS032F07+           ATATGCATAAGTACATGTTTCACAGTTCAAGAGATTCTCATCTCCACCACAAGCTTGACA
                      ____________________________________________________________
consensus             ATATGCATAAGTACATGTTTCACAGTTCAAGAGATTCTCATCTCCACCACAAGCTTGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           AGAATCAACTTTCGCATCCGGTCTGTCAAATCTCTCAACTGGCTCCTGTGAAGGGCCAGA
JMFS032F07+           AGAATCAACTTTCGCATCCGGTCTGTCAAATCTCTCAACTGGCTCCTGTGAAGGGCCAGA
                      ____________________________________________________________
consensus             AGAATCAACTTTCGCATCCGGTCTGTCAAATCTCTCAACTGGCTCCTGTGAAGGGCCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           TTTGCCACGCCTAATATCAGCTTCATCGTCGGAATCGTCTAAATTGTAAACAGGCCTTCG
JMFS032F07+           TTTGCCACGCCTAATATCAGCTTCATCGTCGGAATCGTCTAAATTGTAAACAGGCCTTCG
                      ____________________________________________________________
consensus             TTTGCCACGCCTAATATCAGCTTCATCGTCGGAATCGTCTAAATTGTAAACAGGCCTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS017F07+           ATCCGACCGAACGCGAAGCCTTTCCACCAAACTAGCCATTTCC                 
JMFS032F07+           ATCCGACCGAACGCGAAGCCTTTCCACCAAACTAGCCATTTCCTTCAGTAGAACATTATT
                      ____________________________________________________________
consensus             ATCCGACCGAACGCGAAGCCTTTCCACCAAACTAGCCATTTCCTTCAGTAGAACATTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032F07+           AGGTTAGGACGTAATTGAGCTAAAATTGATGTGTGAAACGTGAATGTCAGTTAGGGCTTT
                      ____________________________________________________________
consensus             AGGTTAGGACGTAATTGAGCTAAAATTGATGTGTGAAACGTGAATGTCAGTTAGGGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032F07+           TGGGCAACTGATTCCCGGAATCTTTAACGGAATCGTATATTATGCAAAGAGGTCCGACAG
                      ____________________________________________________________
consensus             TGGGCAACTGATTCCCGGAATCTTTAACGGAATCGTATATTATGCAAAGAGGTCCGACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032F07+           ACCTGAAAAGTCACTCTATATACGCGGCGGAGAAAGACAGAGCTGGGAACTCGGCCGCTC
                      ____________________________________________________________
consensus             ACCTGAAAAGTCACTCTATATACGCGGCGGAGAAAGACAGAGCTGGGAACTCGGCCGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032F07+           TCTCCGTTGAGGGTTTGATTCTGAAATTCAGAAGATATTCATAGCTGCAAGTAAAGTGGC
                      ____________________________________________________________
consensus             TCTCCGTTGAGGGTTTGATTCTGAAATTCAGAAGATATTCATAGCTGCAAGTAAAGTGGC