clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF041G16 | Sequence | 620 | 004661 (2) | ref|XP_009771340.1| | 5e-26 | PREDICTED: uncharacterized protein LOC104221895 isoform X1 [Nicotiana sylvestri | 634 | 013097 (4) | ref|XP_009771341.1| | 5e-51 | PREDICTED: uncharacterized protein LOC104221895 isoform X2 [Nicotiana sylvestri |
JMFF047I17 | Sequence | 491 | 004661 (2) | ref|XP_009771340.1| | 5e-16 | PREDICTED: uncharacterized protein LOC104221895 isoform X1 [Nicotiana sylvestri | 314 | 013097 (4) | |||
JMFS031B03 | Sequence | 423 | 013097 (4) | ref|XP_004251127.1| | 54.7 | PREDICTED: uncharacterized protein LOC101256453 [Solanum lycopersicum] | |||||
JMFS039B11 | Sequence | 574 | 013097 (4) | ref|XP_009771340.1| | 4e-38 | PREDICTED: uncharacterized protein LOC104221895 isoform X1 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
rJMFF041G16+ GCCATATCGCTGCCCTTTCATGTGTACTCGGCCTCCTTGGATCTATGA
____________________________________________________________
consensus GCCATATCGCTGCCCTTTCATGTGTACTCGGCCTCCTTGGATCTATGA
. : . : . : . : . : . :
rJMFF041G16+ CATCTTCGACAATGGTAAAGAGAAGATTTGTATGGGTGTATGCATCAGTCCAGTTTGCAT
JMFS039B11+ TTTGTATGGGTGTATGCATCAGTCCAGTTTGCAT
____________________________________________________________
consensus CATCTTCGACAATGGTAAAGAGAAGATTTGTATGGGTGTATGCATCAGTCCAGTTTGCAT
. : . : . : . : . : . :
rJMFF041G16+ TTGTGGTGCTCTTTGCACATATTTTCTACTCTCTGGTTCATGTGCAAGCAGTTCTGTCGA
JMFS039B11+ TTGTGGTGCTCTTTGCACATATTTTCTACTCTCTGGTTCATGTGCAAGCAGTTCTGTCGA
____________________________________________________________
consensus TTGTGGTGCTCTTTGCACATATTTTCTACTCTCTGGTTCATGTGCAAGCAGTTCTGTCGA
. : . : . : . : . : . :
rJMFF041G16+ TTCTTCTCTCCACATTTGCGGGGTTTGGTGTTGCAATGAGTGGAAGTTCCATTCTTGTCG
JMFS039B11+ TTCTTCTCTCCACATTTGCGGGGTTTGGTGTTGCAATGAGTGGAAGTTCCATTCTTGTCG
JMFS031B03+ TCG
____________________________________________________________
consensus TTCTTCTCTCCACATTTGCGGGGTTTGGTGTTGCAATGAGTGGAAGTTCCATTCTTGTCG
. : . : . : . : . : . :
rJMFF041G16+ AGTACTTCAGATGGCGAAGAAGGCGGCGCGTTTTGTTACACCGCCAAGAGAATCCTCAAG
JMFS039B11+ AGTACTTCAGATGGCGAAGAAGGCGGCGCGTTTTGTTACACCGCCAAGAGAATCCTCAAG
JMFS031B03+ AGTACTTCAGATGGCGAAGAAGGCGGCGCGTTTTGTTACACCGCCAAGAGAATCCTCAAG
____________________________________________________________
consensus AGTACTTCAGATGGCGAAGAAGGCGGCGCGTTTTGTTACACCGCCAAGAGAATCCTCAAG
. : . : . : . : . : . :
rJMFF041G16+ TCGCGCTACCTCCAGGGCGGTGGCCGCCACAGCCAAACCAAACAGTAACAGCAACAGCAA
rJMFF047I17+ TAACAGCAACAGCAA
JMFS039B11+ TCGCGCTACCTCCAGGGCGGTGGCCGCCACAGCCAAACCAAACAGTAACAGCAACAGCAA
JMFS031B03+ TCGCGCTACCTCCAGGGCGGTGGCCGCCACAGCCAAACCAAACAGTAACAGCAACAGCAA
____________________________________________________________
consensus TCGCGCTACCTCCAGGGCGGTGGCCGCCACAGCCAAACCAAACAGTAACAGCAACAGCAA
. : . : . : . : . : . :
rJMFF041G16+ CAACAACATCGCAGGTCGGTCCTCAACATCATCAGACCGACATAGAAAATCCAGAAACAT
rJMFF047I17+ CAACAACATCGCAGGTCGGTCCTCAACATCATCAGACCGACATAGAAAATCCAGAAACAT
JMFS039B11+ CAACAACATCGCAGGTCGGTCCTCAACATCATCAGACCGACATAGAAAATCCAGAAACAT
JMFS031B03+ CAACAACATCGCAGGTCGGTCCTCAACATCATCAGACCGACATAGAAAATCCAGAAACAT
____________________________________________________________
consensus CAACAACATCGCAGGTCGGTCCTCAACATCATCAGACCGACATAGAAAATCCAGAAACAT
. : . : . : . : . : . :
rJMFF041G16+ TTAGTGGGAGCTAGTTGAAGTTGAAGCATTAGGATGGGAAGGTGTGATGTAGCAAAGATA
rJMFF047I17+ TTAGTGGGAGCTAGTTGAAGTTGAAGCATTAGGATGGGAAGGTGTGATGTAGCAAAGATA
JMFS039B11+ TTAGTGGGAGCTAGTTGAAGTTGAAGCATTAGGATGGGAAGGTGTGATGTAGCAAAGATA
JMFS031B03+ TTAGTGGGAGCTAGTTGAAGTTGAAGCATTAGGATGGGAAGGTGTGATGTAGCAAAGATA
____________________________________________________________
consensus TTAGTGGGAGCTAGTTGAAGTTGAAGCATTAGGATGGGAAGGTGTGATGTAGCAAAGATA
. : . : . : . : . : . :
rJMFF041G16+ GAGAGTAATATGGAAAAATACAACAAGGGGTTTTGTTCATTGCTCCACCTTAGCTTGTAC
rJMFF047I17+ GAGAGTAATATGGAAAAATACAGCAAGGGGTTTTGTTCATTGCTCCACCTTAGCTTGTAC
JMFS039B11+ GAGAGTAATATGGAAAAATACAACAAGGGGTTTTGTTCATTGCTCCACCTTAGCTTGTAC
JMFS031B03+ GAGAGTAATATGGAAAAATACAACAAGGGGTTTTGTTCATTGCTCCACCTTAGCTTGTAC
____________________________________________________________
consensus GAGAGTAATATGGAAAAATACAACAAGGGGTTTTGTTCATTGCTCCACCTTAGCTTGTAC
. : . : . : . : . : . :
rJMFF041G16+ ATTGTTCCTTCTGCATAATTGTAATATTGCAGTGTTGTGAAAAAGAAAGTTTGAGTGATG
rJMFF047I17+ ATTGTTCCTTCTGCATAATTGTAATATTGCAGTGTTGTGAAAAAGAAAGTTTGAGTGATG
JMFS039B11+ ATTGTTCCTTCTGCATAATTGTAATATTGCAGTGTTGTGAAAAAGAAAGTTTGAGTGATG
JMFS031B03+ ATTGTTCCTTCTGCATAATTGTAATATTGCAGTGTTGTGAAAAAGAAAGTTTGAGTGATG
____________________________________________________________
consensus ATTGTTCCTTCTGCATAATTGTAATATTGCAGTGTTGTGAAAAAGAAAGTTTGAGTGATG
. : . : . : . : . : . :
rJMFF041G16+ AGTATACATACATTATACAT
rJMFF047I17+ AGTATACATACATTATACAT
JMFS039B11+ AGTATACATACATTATACAT
JMFS031B03+ AGTATACATACATTATACATXXXXXXXXXXXXXXXXXXXXXXCCCGAGACTAGTTCTCTC
____________________________________________________________
consensus AGTATACATACATTATACATNNNNNNNNNNNNNNNNNNNNNNCCCGAGACTAGTTCTCTC