Contig 013090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS024G05Sequence543013090 (2)gb|ABK95603.1|2e-110unknown [Populus trichocarpa]
JMSF038H12Sequence525003805 (6)ref|XP_009593328.1|3e-11PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chl902013090 (2)gb|KDO59967.1|2e-97hypothetical protein CISIN_1g0041151mg, partial [Citrus sinensis] gb|KDO59968.1|

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038H12- AAGATTATCTGGAGTACAGA
                      ____________________________________________________________
consensus AAGATTATCTGGAGTACAGA
 
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rJMSF038H12- AACTCACAATAATTATACACAGTTATAAACAGATTATACATCTATGTTACTATCTATACA
                      ____________________________________________________________
consensus AACTCACAATAATTATACACAGTTATAAACAGATTATACATCTATGTTACTATCTATACA
 
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rJMSF038H12- CTGGGACTAAGGTCAGTTGAATGGTATAATAACCATGAATATGAGAACAAAACAAAAAAA
                      ____________________________________________________________
consensus CTGGGACTAAGGTCAGTTGAATGGTATAATAACCATGAATATGAGAACAAAACAAAAAAA
 
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rJMSF038H12- ATTGAACCTCGACCAACTAGAAGTAACATCCTCAATTTAAACCCAAGTGACAGTATCTTG
                      ____________________________________________________________
consensus ATTGAACCTCGACCAACTAGAAGTAACATCCTCAATTTAAACCCAAGTGACAGTATCTTG
 
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rJMSF038H12- AAAGCCTTGTTTTCAGGGTAGCCTCTGAAGGCTTCAAGTGTCTTCTTCAGCATATCAAAA
                      ____________________________________________________________
consensus AAAGCCTTGTTTTCAGGGTAGCCTCTGAAGGCTTCAAGTGTCTTCTTCAGCATATCAAAA
 
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rJMSF038H12- TTGTGAATTCACCTGTAATGTTTCTGAATGCTACTCAACTATCCTGTGTGGCATTTGCAA
                      ____________________________________________________________
consensus TTGTGAATTCACCTGTAATGTTTCTGAATGCTACTCAACTATCCTGTGTGGCATTTGCAA
 
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rJMSF038H12- GGTTAGTGGCATACGAGGACAGGACCCCCCCACCAGTAATCTCGGGACTGGTCTGAATCT
                      ____________________________________________________________
consensus GGTTAGTGGCATACGAGGACAGGACCCCCCCACCAGTAATCTCGGGACTGGTCTGAATCT
 
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rJMSF038H12- GCAACTTGTGTTCAAGCAGTTCCAGTAATCAATCTTTCCCGTTGATCTATCTTTTTAACC
                      ____________________________________________________________
consensus GCAACTTGTGTTCAAGCAGTTCCAGTAATCAATCTTTCCCGTTGATCTATCTTTTTAACC
 
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rJMSF038H12- TTCACAATTCCGATTAGGACTTGGAAGCCAAAAAATGCACATAAGCCGTATGCAGCCATA
                      ____________________________________________________________
consensus TTCACAATTCCGATTAGGACTTGGAAGCCAAAAAATGCACATAAGCCGTATGCAGCCATA
 
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rJMSF038H12- GCAGGCATTCTTATAGCGTTTAGATACAAAACTGTCGCAAGGTTAATTAAGCTTCCAGCT
                      ____________________________________________________________
consensus GCAGGCATTCTTATAGCGTTTAGATACAAAACTGTCGCAAGGTTAATTAAGCTTCCAGCT
 
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rJMSF038H12- GCAACTGCACTTAAAATTGTTTTTTGAACAGCAGCAACACGTTGAAAAGCCCGTTCAGAC
                      ____________________________________________________________
consensus GCAACTGCACTTAAAATTGTTTTTTGAACAGCAGCAACACGTTGAAAAGCCCGTTCAGAC
 
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rJMSF038H12- TCCAAAGCTCTAACTCGAAGTTTAAGATCACCTTGCTCCAGTCGCTGGATAATTTCTGCA
JMFS024G05+ GCA
                      ____________________________________________________________
consensus TCCAAAGCTCTAACTCGAAGTTTAAGATCACCTTGCTCCAGTCGCTGGATAATTTCTGCA
 
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rJMSF038H12- AGCTTTTCGACCCTATCAGCCTGCCTGAATAGGTTGTAAAATGCACGGTTCTGTCTGTCC
JMFS024G05+ AGCTTTTCGACCCTATCAGCCTGCCTGAATAGGTTGTAAAATGCACGGTTCTGTCTGTCC
                      ____________________________________________________________
consensus AGCTTTTCGACCCTATCAGCCTGCCTGAATAGGTTGTAAAATGCACGGTTCTGTCTGTCC
 
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rJMSF038H12- CACCTTGTTTTGAAGTCCTTTAAAATAACTTCAACTCCAGCTTCACGAAACCTAAGCAAT
JMFS024G05+ CACCTTGTTTTGAAGTCCTTTAAAATAACTTCAACTCCAGCTTCACGAAACCTAAGCAAT
                      ____________________________________________________________
consensus CACCTTGTTTTGAAGTCCTTTAAAATAACTTCAACTCCAGCTTCACGAAACCTAAGCAAT
 
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rJMSF038H12- TCTAGTGCATACGGCTTANCAATCTCAGTAATATCAAATCGTGGATCANGGCCCTTCCCG
JMFS024G05+ TCTAGTGCATACGGCTTAGCAATCTCAGTAATATCAAATCGTGGATCAAGGCCCTTCCCG
                      ____________________________________________________________
consensus TCTAGTGCATACGGCTTAGCAATCTCAGTAATATCAAATCGTGGATCAAGGCCCTTCCCG
 
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rJMSF038H12- ATGCCATCTAAGACTGAAAATGCTCTAACAACAAAAGTGAAC
JMFS024G05+ ATGCCATGTAAGACTGAAAATGCTCTAACAACAAAAGTGAACGTGGCAGGAAAGCGGAAA
                      ____________________________________________________________
consensus ATGCCATGTAAGACTGAAAATGCTCTAACAACAAAAGTGAACGTGGCAGGAAAGCGGAAA
 
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JMFS024G05+ GGCTGATCTGCTGCAATGGATAATAGATCTTCACCAATTGCAGCTAGACGTTGCTTTTTC
                      ____________________________________________________________
consensus GGCTGATCTGCTGCAATGGATAATAGATCTTCACCAATTGCAGCTAGACGTTGCTTTTTC
 
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JMFS024G05+ TTCTCTATTTTTTCTTCCTTGGTCAAAGGCTTTTTGAATCCAAGTTCTGCTTTAGCCAAC
                      ____________________________________________________________
consensus TTCTCTATTTTTTCTTCCTTGGTCAAAGGCTTTTTGAATCCAAGTTCTGCTTTAGCCAAC
 
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JMFS024G05+ TCCCTCTCCCTCCTTTGTGTTGCAAGGCGCTCTTCAAAACTGTTAAGGAAGAACTGAGCG
                      ____________________________________________________________
consensus TCCCTCTCCCTCCTTTGTGTTGCAAGGCGCTCTTCAAAACTGTTAAGGAAGAACTGAGCG
 
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JMFS024G05+ GTTCTCCTGACAGCTGTCATATCTCCAGTGGGCACAAGGACACCCATTTGAACCATTGCT
                      ____________________________________________________________
consensus GTTCTCCTGACAGCTGTCATATCTCCAGTGGGCACAAGGACACCCATTTGAACCATTGCT
 
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JMFS024G05+ TGCAGAACCTTATCTGGATCCTTCTCATAAACCCCATAGAATACTTCTAGTAAGCCTTCT
                      ____________________________________________________________
consensus TGCAGAACCTTATCTGGATCCTTCTCATAAACCCCATAGAATACTTCTAGTAAGCCTTCT