Contig 013090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS024G05Sequence543013090 (2)gb|ABK95603.1|2e-110unknown [Populus trichocarpa]
JMSF038H12Sequence525003805 (6)ref|XP_009593328.1|3e-11PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chl902013090 (2)gb|KDO59967.1|2e-97hypothetical protein CISIN_1g0041151mg, partial [Citrus sinensis] gb|KDO59968.1|

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-                                                  AAGATTATCTGGAGTACAGA
                      ____________________________________________________________
consensus                                                     AAGATTATCTGGAGTACAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          AACTCACAATAATTATACACAGTTATAAACAGATTATACATCTATGTTACTATCTATACA
                      ____________________________________________________________
consensus             AACTCACAATAATTATACACAGTTATAAACAGATTATACATCTATGTTACTATCTATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          CTGGGACTAAGGTCAGTTGAATGGTATAATAACCATGAATATGAGAACAAAACAAAAAAA
                      ____________________________________________________________
consensus             CTGGGACTAAGGTCAGTTGAATGGTATAATAACCATGAATATGAGAACAAAACAAAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          ATTGAACCTCGACCAACTAGAAGTAACATCCTCAATTTAAACCCAAGTGACAGTATCTTG
                      ____________________________________________________________
consensus             ATTGAACCTCGACCAACTAGAAGTAACATCCTCAATTTAAACCCAAGTGACAGTATCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          AAAGCCTTGTTTTCAGGGTAGCCTCTGAAGGCTTCAAGTGTCTTCTTCAGCATATCAAAA
                      ____________________________________________________________
consensus             AAAGCCTTGTTTTCAGGGTAGCCTCTGAAGGCTTCAAGTGTCTTCTTCAGCATATCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          TTGTGAATTCACCTGTAATGTTTCTGAATGCTACTCAACTATCCTGTGTGGCATTTGCAA
                      ____________________________________________________________
consensus             TTGTGAATTCACCTGTAATGTTTCTGAATGCTACTCAACTATCCTGTGTGGCATTTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          GGTTAGTGGCATACGAGGACAGGACCCCCCCACCAGTAATCTCGGGACTGGTCTGAATCT
                      ____________________________________________________________
consensus             GGTTAGTGGCATACGAGGACAGGACCCCCCCACCAGTAATCTCGGGACTGGTCTGAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          GCAACTTGTGTTCAAGCAGTTCCAGTAATCAATCTTTCCCGTTGATCTATCTTTTTAACC
                      ____________________________________________________________
consensus             GCAACTTGTGTTCAAGCAGTTCCAGTAATCAATCTTTCCCGTTGATCTATCTTTTTAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          TTCACAATTCCGATTAGGACTTGGAAGCCAAAAAATGCACATAAGCCGTATGCAGCCATA
                      ____________________________________________________________
consensus             TTCACAATTCCGATTAGGACTTGGAAGCCAAAAAATGCACATAAGCCGTATGCAGCCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          GCAGGCATTCTTATAGCGTTTAGATACAAAACTGTCGCAAGGTTAATTAAGCTTCCAGCT
                      ____________________________________________________________
consensus             GCAGGCATTCTTATAGCGTTTAGATACAAAACTGTCGCAAGGTTAATTAAGCTTCCAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          GCAACTGCACTTAAAATTGTTTTTTGAACAGCAGCAACACGTTGAAAAGCCCGTTCAGAC
                      ____________________________________________________________
consensus             GCAACTGCACTTAAAATTGTTTTTTGAACAGCAGCAACACGTTGAAAAGCCCGTTCAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          TCCAAAGCTCTAACTCGAAGTTTAAGATCACCTTGCTCCAGTCGCTGGATAATTTCTGCA
JMFS024G05+                                                                    GCA
                      ____________________________________________________________
consensus             TCCAAAGCTCTAACTCGAAGTTTAAGATCACCTTGCTCCAGTCGCTGGATAATTTCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          AGCTTTTCGACCCTATCAGCCTGCCTGAATAGGTTGTAAAATGCACGGTTCTGTCTGTCC
JMFS024G05+           AGCTTTTCGACCCTATCAGCCTGCCTGAATAGGTTGTAAAATGCACGGTTCTGTCTGTCC
                      ____________________________________________________________
consensus             AGCTTTTCGACCCTATCAGCCTGCCTGAATAGGTTGTAAAATGCACGGTTCTGTCTGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          CACCTTGTTTTGAAGTCCTTTAAAATAACTTCAACTCCAGCTTCACGAAACCTAAGCAAT
JMFS024G05+           CACCTTGTTTTGAAGTCCTTTAAAATAACTTCAACTCCAGCTTCACGAAACCTAAGCAAT
                      ____________________________________________________________
consensus             CACCTTGTTTTGAAGTCCTTTAAAATAACTTCAACTCCAGCTTCACGAAACCTAAGCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          TCTAGTGCATACGGCTTANCAATCTCAGTAATATCAAATCGTGGATCANGGCCCTTCCCG
JMFS024G05+           TCTAGTGCATACGGCTTAGCAATCTCAGTAATATCAAATCGTGGATCAAGGCCCTTCCCG
                      ____________________________________________________________
consensus             TCTAGTGCATACGGCTTAGCAATCTCAGTAATATCAAATCGTGGATCAAGGCCCTTCCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038H12-          ATGCCATCTAAGACTGAAAATGCTCTAACAACAAAAGTGAAC                  
JMFS024G05+           ATGCCATGTAAGACTGAAAATGCTCTAACAACAAAAGTGAACGTGGCAGGAAAGCGGAAA
                      ____________________________________________________________
consensus             ATGCCATGTAAGACTGAAAATGCTCTAACAACAAAAGTGAACGTGGCAGGAAAGCGGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024G05+           GGCTGATCTGCTGCAATGGATAATAGATCTTCACCAATTGCAGCTAGACGTTGCTTTTTC
                      ____________________________________________________________
consensus             GGCTGATCTGCTGCAATGGATAATAGATCTTCACCAATTGCAGCTAGACGTTGCTTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024G05+           TTCTCTATTTTTTCTTCCTTGGTCAAAGGCTTTTTGAATCCAAGTTCTGCTTTAGCCAAC
                      ____________________________________________________________
consensus             TTCTCTATTTTTTCTTCCTTGGTCAAAGGCTTTTTGAATCCAAGTTCTGCTTTAGCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024G05+           TCCCTCTCCCTCCTTTGTGTTGCAAGGCGCTCTTCAAAACTGTTAAGGAAGAACTGAGCG
                      ____________________________________________________________
consensus             TCCCTCTCCCTCCTTTGTGTTGCAAGGCGCTCTTCAAAACTGTTAAGGAAGAACTGAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024G05+           GTTCTCCTGACAGCTGTCATATCTCCAGTGGGCACAAGGACACCCATTTGAACCATTGCT
                      ____________________________________________________________
consensus             GTTCTCCTGACAGCTGTCATATCTCCAGTGGGCACAAGGACACCCATTTGAACCATTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024G05+           TGCAGAACCTTATCTGGATCCTTCTCATAAACCCCATAGAATACTTCTAGTAAGCCTTCT
                      ____________________________________________________________
consensus             TGCAGAACCTTATCTGGATCCTTCTCATAAACCCCATAGAATACTTCTAGTAAGCCTTCT