| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002C10 | Sequence | 379 | 013073 (4) | 721 | 009795 (3) | ref|XP_010067742.1| | 3e-100 | PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Eucalyptus grandis] gb|KCW6 | |||
| JMFF044N03 | Sequence | 642 | 013073 (4) | ref|XP_004143754.1| | 8e-52 | PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Cucumis sativus] ref|XP_0041 | 631 | 009795 (3) | ref|XP_008245586.1| | 8e-61 | PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Prunus mume] |
| JMFS001F10 | Sequence | 627 | 013073 (4) | ref|XP_004143754.1| | 3e-46 | PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Cucumis sativus] ref|XP_0041 | |||||
| JMSF040G05 | Sequence | 683 | 013073 (4) | ref|XP_004233165.1| | 3e-73 | PREDICTED: E3 ubiquitin-protein ligase SINAT5 isoform X1 [Solanum lycopersicum] | 892 | 009795 (3) | gb|KDP40517.1| | 2e-132 | hypothetical protein JCGZ_24516 [Jatropha curcas] |
This contig is upended
. : . : . : . : . : . :
JMSF040G05+ TGTAGTAAGGATAGATCCCCATGCACCCAAAGTCCTGA
____________________________________________________________
consensus TGTAGTAAGGATAGATCCCCATGCACCCAAAGTCCTGA
. : . : . : . : . : . :
JMSF040G05+ TATTTACAAGGGAGCTCAAGAGATGCAGCAACCTTCTCCAAAGCAAGACATCTAATATTA
JMFF044N03+ AATATTA
____________________________________________________________
consensus TATTTACAAGGGAGCTCAAGAGATGCAGCAACCTTCTCCAAAGCAAGACATCTAATATTA
. : . : . : . : . : . :
JMSF040G05+ CCAAGCTCATGCCTGCAAGTTGGGCAGCGGTTGTGTACCCTGGGCTTGCAACCAGAACAC
JMFF044N03+ CCAAGCTCATGCCTGCAAGTTGGGCAGCGGTTGTGTACCCTGGGCTTGCAACCAGAACAC
JMFS001F10+ TGCAAGTTGGGCAGCGGTTGTGTACCCTGGGCTTGCAACCAGAACAC
____________________________________________________________
consensus CCAAGCTCATGCCTGCAAGTTGGGCAGCGGTTGTGTACCCTGGGCTTGCAACCAGAACAC
. : . : . : . : . : . :
JMSF040G05+ AATGTGTGACCATTGCAACACTGATGAATTGGTGGATACATGGCATTTAGGCACACCGGG
JMFF044N03+ AATGTGTGACCATTGCAACACTGATGAATTGGTGGATACATGGCATTTAGGCACACCGGG
JMFS001F10+ AATGTGTGACCATTGCAACACTGATGAATTGGTGGATACATGGCATTTAGGCACACCGGG
____________________________________________________________
consensus AATGTGTGACCATTGCAACACTGATGAATTGGTGGATACATGGCATTTAGGCACACCGGG
. : . : . : . : . : . :
JMSF040G05+ CATTCCAACAGTTCACGAACATTGCTAGAAACAGTTACATTAGGTTTTAGAGTATTCTGC
JMFF044N03+ CATTCCAACAGTTCACGAACATTGCTAGAAACAGTTACATTAGGTTTTAGAGTATTCTGC
JMFS001F10+ CATTCCAACAGTTCACGAACATTGCTAGAAACAGTTACATTAGGTTTTAGAGTATTCTGC
____________________________________________________________
consensus CATTCCAACAGTTCACGAACATTGCTAGAAACAGTTACATTAGGTTTTAGAGTATTCTGC
. : . : . : . : . : . :
JMSF040G05+ ATAGGCTCACTGGAAAGTTCACCAACATCCATTGAGTCTTCATCTTGTGGAGGATCAATG
JMFF044N03+ ATAGGCTCACTGGAAAGTTCACCAACATCCATTGAGTCTTCATCTTGTGGAGGATCAATG
JMFS001F10+ ATAGGCTCACTGGAAAGTTCACCAACATCCATTGAGTCTTCATCTTGTGGAGGATCAATG
____________________________________________________________
consensus ATAGGCTCACTGGAAAGTTCACCAACATCCATTGAGTCTTCATCTTGTGGAGGATCAATG
. : . : . : . : . : . :
JMSF040G05+ ACCTCAGGTTTACATCGGATATCATCAAAATAAGGACTTCCCGTTGCCATTGATATTAAT
JMFF044N03+ ACCTCAGGTTTACATCGGATATCATCAAAATAAGGACTTCCCGTTGCCATTGATATTAAT
JMFS001F10+ ACCTCAGGTTTACATCGGATATCATCAAAATAAGGACTTCCCGTTGCCATTGATATTAAT
____________________________________________________________
consensus ACCTCAGGTTTACATCGGATATCATCAAAATAAGGACTTCCCGTTGCCATTGATATTAAT
. : . : . : . : . : . :
JMSF040G05+ TGCTAATATAGTGATTGGTCCCTCCCTGAACACGTCACCTGTGTTAGTGTCTCGTCACAA
JMFF002C10+ CGTCACAA
JMFF044N03+ TGCTAATATAGTGATTGGTCCCTCCCTGAACACGTCACCTGTGTTAGTGTCTCGTCACAA
JMFS001F10+ TGCTAATATAGTGATTGGTCCCTCCCTGAACACG--------------------TCACAA
____________________________________________________________
consensus TGCTAATATAGTGATTGGTCCCTCCCTGAACACGTCACCTGTGTTAGTGTCTCGTCACAA
. : . : . : . : . : . :
JMSF040G05+ TGGAAATGGCACACTGAGGTTCAAAGAAGAGTCGCAACAGATCTAGACCATTCCATTCCG
JMFF002C10+ TGGAAATGGCACACTGAGGTTCAAAGAAGAGTCGCAACAGATCTAGACCATTCCATTCCG
JMFF044N03+ TGGAAATGGCACACTGAGGTTCAAAGAAGAGTCGCAACAGATCTAGACCATTCCATTCCG
JMFS001F10+ TGGAAATGGCACACTGAGGTTCAAAGAAGAGTCGCAACAGATCTAGACCATTCCATTCCG
____________________________________________________________
consensus TGGAAATGGCACACTGAGGTTCAAAGAAGAGTCGCAACAGATCTAGACCATTCCATTCCG
. : . : . : . : . : . :
JMSF040G05+ AAAACGACAACCGCCGTCCAACACGAAAAGAAAAACCATTCCAATCGGAGGAGGAGAAAC
JMFF002C10+ AAAACGACAACCGCCGTCCAACACGAAAAGAAAAACCATTCCAATCGGAGGAGGAGAAAC
JMFF044N03+ AAAACGACAACCGCCGTCCAACACGAAAAGAAAAACCATTCCAATCGGAGGAGGAGAAAC
JMFS001F10+ AAAACGACAACCGCCGTCCAACACGAAAAGAAAAACCATTCCAATCGGAGGAGGAGAAAC
____________________________________________________________
consensus AAAACGACAACCGCCGTCCAACACGAAAAGAAAAACCATTCCAATCGGAGGAGGAGAAAC
. : . : . : . : . : . :
JMSF040G05+ CCTAAGAAGAAGCCAGGCGGCAGGGAGGCACTATCAGCTCTGCAAACTCAAAAGATGGAG
JMFF002C10+ CCTAAGAAGAAGCCAGGCGGCAGGGAGGCACTATCAGCTCTGCAAACTCAAAAGATGGAG
JMFF044N03+ CCTAAGAAGAAGCCAGGCGGCAGGGAGGCACTATCAGCTCTGCAAACTCAAAAGATGGAG
JMFS001F10+ CCTAAGAAGAAGCCAGGCGGCAGGGAGGCACTATCAGCTCTGCAAACTCAAAAGATGGAG
____________________________________________________________
consensus CCTAAGAAGAAGCCAGGCGGCAGGGAGGCACTATCAGCTCTGCAAACTCAAAAGATGGAG
. : . : . : . : . : . :
JMSF040G05+ ACAGAAATGATAGGGATACATGAAATGGTGATTTGAAGAGGAG
JMFF002C10+ ACAGAAATGATAGGGATACATGAAATGGTGATTTGAAGAGGAGCAAATGATGGTGTAGTG
JMFF044N03+ ACAGAAATGATAGGGATACATGAAATGGTGATTTGAAGAGGAGCAAATGATGGTGTAGTG
JMFS001F10+ ACAGAAATGATAGGGATACATGAAATGGTGATTTGAAGAGGAGCAAATGATGGTGTAGTG
____________________________________________________________
consensus ACAGAAATGATAGGGATACATGAAATGGTGATTTGAAGAGGAGCAAATGATGGTGTAGTG
. : . : . : . : . : . :
JMFF002C10+ AGGAGAGATTTGAGGAGCAGAAAAGGGGGATTTC
JMFF044N03+ AGGAGAGATTTGAGGAGCAGAAAAGGGGGATTTC
JMFS001F10+ AGGAGAGATTTGAGGAGCAGAAAAGGGGGATTTCAATTTTCAAAATAAAGGCGTGTCCTT
____________________________________________________________
consensus AGGAGAGATTTGAGGAGCAGAAAAGGGGGATTTCAATTTTCAAAATAAAGGCGTGTCCTT