| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019E11 | Sequence | 551 | 013071 (5) | ref|XP_006366815.1| | 2e-62 | PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006 | 757 | 012450 (7) | ref|XP_006344098.1| | 2e-76 | PREDICTED: uncharacterized LOC102577701 isoform X1 [Solanum tuberosum] ref|XP_00 |
| JMFN046N22 | Sequence | 625 | 013071 (5) | ref|XP_009610151.1| | 5e-43 | PREDICTED: FRIGIDA-like protein 3 [Nicotiana tomentosiformis] ref|XP_009610152.1 | |||||
| JMFS055F02 | Sequence | 642 | 013071 (5) | ref|XP_006366815.1| | 8e-72 | PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006 | |||||
| JMSF042P18 | Sequence | 753 | 013071 (5) | ref|XP_006366815.1| | 2e-89 | PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006 | 660 | 012450 (7) | ref|XP_009629363.1| | 2e-73 | PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana tomentosiformis] |
| JMSF047B16 | Sequence | 714 | 013071 (5) | ref|XP_006366815.1| | 2e-83 | PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006 | 784 | 012450 (7) | ref|XP_006344098.1| | 4e-99 | PREDICTED: uncharacterized LOC102577701 isoform X1 [Solanum tuberosum] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
JMSF042P18+ TTATAGCAGCAAGGTTCTTACGGTTGTCTGATATAAATTT
JMSF047B16+ TCTGATATAAATTT
____________________________________________________________
consensus TTATAGCAGCAAGGTTCTTACGGTTGTCTGATATAAATTT
. : . : . : . : . : . :
JMSF042P18+ GTGTAGGCCATCTGAATCCATCTCTTTGCATAGCTTAACAAGCTCAGGATAAGACTTGAC
JMFS055F02+ CAAGCTCAGGATAAGACTTGAC
JMSF047B16+ GTGTAGGCCATCTGAATCCATCTCTTTGCATAGCTTAACAAGCTCAGGATAAGACTTGAC
____________________________________________________________
consensus GTGTAGGCCATCTGAATCCATCTCTTTGCATAGCTTAACAAGCTCAGGATAAGACTTGAC
. : . : . : . : . : . :
JMSF042P18+ CTCCACATTTCCAGTCTCATAAAGTTTCCCATAATCCCCTACGTTAAGCACTGTGGTCGT
JMFS055F02+ CTCCACATTTCCAGTCTCATAAAGTTTCCCATAATCCCCTACGTTAAGCACTGTGGTCGT
JMSF047B16+ CTCCACATTTCCAGTCTCATAAAGTTTCCCATAATCCCCTACGTTAAGCACTGTGGTCGT
____________________________________________________________
consensus CTCCACATTTCCAGTCTCATAAAGTTTCCCATAATCCCCTACGTTAAGCACTGTGGTCGT
. : . : . : . : . : . :
JMSF042P18+ GGCATCAAGAGACTTCTCTTCCACAACACATGAGTCAACTTGGTCTTCAAAATTAACAGT
JMFF019E11+ TTCAAAATTAACAGT
JMFS055F02+ GGCATCAAGAGACTTCTCTTCCACAACACATGAGTCAACTTGGTCTTCAAAATTAACAGT
JMSF047B16+ GGCATCAAGAGACTTCTCTTCCACAACACATGAGTCAACTTGGTCTTCAAAATTAACAGT
____________________________________________________________
consensus GGCATCAAGAGACTTCTCTTCCACAACACATGAGTCAACTTGGTCTTCAAAATTAACAGT
. : . : . : . : . : . :
JMSF042P18+ AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
JMFF019E11+ AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
JMFS055F02+ AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
JMSF047B16+ AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
JMFN046N22+ AGAGCAAAGGAAATGGCAGAAACTGC
____________________________________________________________
consensus AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
. : . : . : . : . : . :
JMSF042P18+ AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
JMFF019E11+ AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
JMFS055F02+ AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
JMSF047B16+ AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
JMFN046N22+ AGCATCTCTTTTCTCTTGGAGCCTTTCAAGTGAAGCTCTCTC-TTAGCCACAACAGCTGC
____________________________________________________________
consensus AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
. : . : . : . : . : . :
JMSF042P18+ TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
JMFF019E11+ TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
JMFS055F02+ TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
JMSF047B16+ TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
JMFN046N22+ TGCACGCTTCTCCAACATCTCTTTAGACTGAACTATTTTTGTTTCAAACTCCTTCTCTTG
____________________________________________________________
consensus TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
. : . : . : . : . : . :
JMSF042P18+ GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
JMFF019E11+ GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
JMFS055F02+ GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
JMSF047B16+ GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
JMFN046N22+ ATCTTCCAATTCTGTGAAACGCCTTTTCAAAGACTTCTCAAGACCATGAAAATGTTCTTC
____________________________________________________________
consensus GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
. : . : . : . : . : . :
JMSF042P18+ AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
JMFF019E11+ AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
JMFS055F02+ AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
JMSF047B16+ AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
JMFN046N22+ AAGTTGTTTCCATTTCATGTTGAGGGTAATTGCGCGGTGACTTTCAAGCTCAGCAAATGC
____________________________________________________________
consensus AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
. : . : . : . : . : . :
JMSF042P18+ TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
JMFF019E11+ TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
JMFS055F02+ TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
JMSF047B16+ TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
JMFN046N22+ TTTCTGCAGTTGCTGGATCTTTGAGGTAGTCGAATGCATGAGTATCTCAACTGACTGAGA
____________________________________________________________
consensus TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
. : . : . : . : . : . :
JMSF042P18+ ATCCTCCATGGCAGAT
JMFF019E11+ ATCCTCCATGGCAGAT
JMFS055F02+ ATCCTCCATGGCAGATAAGTGCCGGACAAA
JMSF047B16+ ATCCTCCATGGCAGATAAGTGCCGGACAAA
JMFN046N22+ ATCTTCCATGGCAGATTAGCCCGAAGCGATAACGAGCTAAAATTTCAGCGATAAGTGAGA
____________________________________________________________
consensus ATCCTCCATGGCAGATAAGTGCCGGACAAAAACGAGCTAAAATTTCAGCGATAAGTGAGA
. : . : . : . : . : . :
JMFN046N22+ ACACAGCAGAAATTGACACTCGGATCGGAAACGCGACGGATCGGAGGTGAGAGGCGGAGG
____________________________________________________________
consensus ACACAGCAGAAATTGACACTCGGATCGGAAACGCGACGGATCGGAGGTGAGAGGCGGAGG
. : . : . : . : . : . :
JMFN046N22+ CTGAGGGCGGCGGGAAGTCGCCGGAGAATCAGACCATTTTGGTGGCGAGGGAGGGTTTGG
____________________________________________________________
consensus CTGAGGGCGGCGGGAAGTCGCCGGAGAATCAGACCATTTTGGTGGCGAGGGAGGGTTTGG
. : . : . : . : . : . :
JMFN046N22+ GATACAGTGAGCGAATCCCTAAAGAGAGGAAAGAGGAAAGTATCAGCGAGAATGTTGAGT
____________________________________________________________
consensus GATACAGTGAGCGAATCCCTAAAGAGAGGAAAGAGGAAAGTATCAGCGAGAATGTTGAGT
. : . : . : . : . : . :
JMFN046N22+ GGTATTTATGACAAGTCTCCGACACACACGCACACGCAGACAGACACACCTCTCTCTCTC
____________________________________________________________
consensus GGTATTTATGACAAGTCTCCGACACACACGCACACGCAGACAGACACACCTCTCTCTCTC