Contig 013071:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019E11Sequence551013071 (5)ref|XP_006366815.1|2e-62PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006757012450 (7)ref|XP_006344098.1|2e-76PREDICTED: uncharacterized LOC102577701 isoform X1 [Solanum tuberosum] ref|XP_00
JMFN046N22Sequence625013071 (5)ref|XP_009610151.1|5e-43PREDICTED: FRIGIDA-like protein 3 [Nicotiana tomentosiformis] ref|XP_009610152.1
JMFS055F02Sequence642013071 (5)ref|XP_006366815.1|8e-72PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006
JMSF042P18Sequence753013071 (5)ref|XP_006366815.1|2e-89PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006660012450 (7)ref|XP_009629363.1|2e-73PREDICTED: FRIGIDA-like protein 3 isoform X2 [Nicotiana tomentosiformis]
JMSF047B16Sequence714013071 (5)ref|XP_006366815.1|2e-83PREDICTED: FRIGIDA-like protein 3-like isoform X1 [Solanum tuberosum] ref|XP_006784012450 (7)ref|XP_006344098.1|4e-99PREDICTED: uncharacterized LOC102577701 isoform X1 [Solanum tuberosum] ref|XP_00

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042P18+ TTATAGCAGCAAGGTTCTTACGGTTGTCTGATATAAATTT
JMSF047B16+ TCTGATATAAATTT
                      ____________________________________________________________
consensus TTATAGCAGCAAGGTTCTTACGGTTGTCTGATATAAATTT
 
. : . : . : . : . : . :
JMSF042P18+ GTGTAGGCCATCTGAATCCATCTCTTTGCATAGCTTAACAAGCTCAGGATAAGACTTGAC
JMFS055F02+ CAAGCTCAGGATAAGACTTGAC
JMSF047B16+ GTGTAGGCCATCTGAATCCATCTCTTTGCATAGCTTAACAAGCTCAGGATAAGACTTGAC
                      ____________________________________________________________
consensus GTGTAGGCCATCTGAATCCATCTCTTTGCATAGCTTAACAAGCTCAGGATAAGACTTGAC
 
. : . : . : . : . : . :
JMSF042P18+ CTCCACATTTCCAGTCTCATAAAGTTTCCCATAATCCCCTACGTTAAGCACTGTGGTCGT
JMFS055F02+ CTCCACATTTCCAGTCTCATAAAGTTTCCCATAATCCCCTACGTTAAGCACTGTGGTCGT
JMSF047B16+ CTCCACATTTCCAGTCTCATAAAGTTTCCCATAATCCCCTACGTTAAGCACTGTGGTCGT
                      ____________________________________________________________
consensus CTCCACATTTCCAGTCTCATAAAGTTTCCCATAATCCCCTACGTTAAGCACTGTGGTCGT
 
. : . : . : . : . : . :
JMSF042P18+ GGCATCAAGAGACTTCTCTTCCACAACACATGAGTCAACTTGGTCTTCAAAATTAACAGT
JMFF019E11+ TTCAAAATTAACAGT
JMFS055F02+ GGCATCAAGAGACTTCTCTTCCACAACACATGAGTCAACTTGGTCTTCAAAATTAACAGT
JMSF047B16+ GGCATCAAGAGACTTCTCTTCCACAACACATGAGTCAACTTGGTCTTCAAAATTAACAGT
                      ____________________________________________________________
consensus GGCATCAAGAGACTTCTCTTCCACAACACATGAGTCAACTTGGTCTTCAAAATTAACAGT
 
. : . : . : . : . : . :
JMSF042P18+ AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
JMFF019E11+ AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
JMFS055F02+ AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
JMSF047B16+ AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
JMFN046N22+ AGAGCAAAGGAAATGGCAGAAACTGC
                      ____________________________________________________________
consensus AGGCCCTGCAGAAAATGGGTTTCGATGTTTATCCAGAGCAATGGAGATAGCAGAAACTGC
 
. : . : . : . : . : . :
JMSF042P18+ AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
JMFF019E11+ AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
JMFS055F02+ AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
JMSF047B16+ AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
JMFN046N22+ AGCATCTCTTTTCTCTTGGAGCCTTTCAAGTGAAGCTCTCTC-TTAGCCACAACAGCTGC
                      ____________________________________________________________
consensus AGCATCTCTTTTCTCTTGGAGCCTTACAAGAGAAGCTTGCTCTTTAGCCACAACAGCTGC
 
. : . : . : . : . : . :
JMSF042P18+ TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
JMFF019E11+ TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
JMFS055F02+ TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
JMSF047B16+ TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
JMFN046N22+ TGCACGCTTCTCCAACATCTCTTTAGACTGAACTATTTTTGTTTCAAACTCCTTCTCTTG
                      ____________________________________________________________
consensus TTCACGATTCTCCAATGTCTCTTTGGCTTTTACAATTTTGGATTCAAACTCCTTTTCTTG
 
. : . : . : . : . : . :
JMSF042P18+ GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
JMFF019E11+ GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
JMFS055F02+ GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
JMSF047B16+ GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
JMFN046N22+ ATCTTCCAATTCTGTGAAACGCCTTTTCAAAGACTTCTCAAGACCATGAAAATGTTCTTC
                      ____________________________________________________________
consensus GTCTTCCAATTCAGTGAAACGCCTCTTCAAAGACTTTTCAAGCCCATGAAAATGCTCTTC
 
. : . : . : . : . : . :
JMSF042P18+ AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
JMFF019E11+ AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
JMFS055F02+ AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
JMSF047B16+ AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
JMFN046N22+ AAGTTGTTTCCATTTCATGTTGAGGGTAATTGCGCGGTGACTTTCAAGCTCAGCAAATGC
                      ____________________________________________________________
consensus AAGTTGCTTCCATTTCATGTTAAGAGTAACTGCACGATGACTCTCAAGCTCAGCAAATGC
 
. : . : . : . : . : . :
JMSF042P18+ TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
JMFF019E11+ TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
JMFS055F02+ TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
JMSF047B16+ TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
JMFN046N22+ TTTCTGCAGTTGCTGGATCTTTGAGGTAGTCGAATGCATGAGTATCTCAACTGACTGAGA
                      ____________________________________________________________
consensus TTTCTGCAGCTGCTGTATCTTAGAGGTAGTGGAATCCATGAGCGTCACAACTGACTGGGA
 
. : . : . : . : . : . :
JMSF042P18+ ATCCTCCATGGCAGAT
JMFF019E11+ ATCCTCCATGGCAGAT
JMFS055F02+ ATCCTCCATGGCAGATAAGTGCCGGACAAA
JMSF047B16+ ATCCTCCATGGCAGATAAGTGCCGGACAAA
JMFN046N22+ ATCTTCCATGGCAGATTAGCCCGAAGCGATAACGAGCTAAAATTTCAGCGATAAGTGAGA
                      ____________________________________________________________
consensus ATCCTCCATGGCAGATAAGTGCCGGACAAAAACGAGCTAAAATTTCAGCGATAAGTGAGA
 
. : . : . : . : . : . :
JMFN046N22+ ACACAGCAGAAATTGACACTCGGATCGGAAACGCGACGGATCGGAGGTGAGAGGCGGAGG
                      ____________________________________________________________
consensus ACACAGCAGAAATTGACACTCGGATCGGAAACGCGACGGATCGGAGGTGAGAGGCGGAGG
 
. : . : . : . : . : . :
JMFN046N22+ CTGAGGGCGGCGGGAAGTCGCCGGAGAATCAGACCATTTTGGTGGCGAGGGAGGGTTTGG
                      ____________________________________________________________
consensus CTGAGGGCGGCGGGAAGTCGCCGGAGAATCAGACCATTTTGGTGGCGAGGGAGGGTTTGG
 
. : . : . : . : . : . :
JMFN046N22+ GATACAGTGAGCGAATCCCTAAAGAGAGGAAAGAGGAAAGTATCAGCGAGAATGTTGAGT
                      ____________________________________________________________
consensus GATACAGTGAGCGAATCCCTAAAGAGAGGAAAGAGGAAAGTATCAGCGAGAATGTTGAGT
 
. : . : . : . : . : . :
JMFN046N22+ GGTATTTATGACAAGTCTCCGACACACACGCACACGCAGACAGACACACCTCTCTCTCTC
                      ____________________________________________________________
consensus GGTATTTATGACAAGTCTCCGACACACACGCACACGCAGACAGACACACCTCTCTCTCTC