Contig 013068:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN046G13Sequence631013068 (3)ref|XP_009613181.1|79.0PREDICTED: uncharacterized protein LOC104106355 [Nicotiana tomentosiformis]
JMSF031E10Sequence477013068 (3)ref|XP_009613181.1|79.7PREDICTED: uncharacterized protein LOC104106355 [Nicotiana tomentosiformis]693004835 (186)sp|P04715.1|RBS2_PETHY3e-92RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast
JMSF037F13Sequence533013068 (3)ref|XP_009613181.1|79.3PREDICTED: uncharacterized protein LOC104106355 [Nicotiana tomentosiformis]691004835 (186)sp|P04715.1|RBS2_PETHY4e-92RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031E10+                                                               TGCGACCA
                      ____________________________________________________________
consensus                                                                 TGCGACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F13+                                   GAGAGAGGGGATTTCAGCGCCGCACAAGTACTAGCA
JMSF031E10+           CCTGCGCCTCCCCTGCGATTCTGCGAGAGAGGGGATTTCAGCGCCGCACAAGTACTAGCA
JMFN046G13-                                   GAGAGAGGGGATTTCAGCGCCGCACAAGTACTAGCA
                      ____________________________________________________________
consensus             CCTGCGCCTCCCCTGCGATTCTGCGAGAGAGGGGATTTCAGCGCCGCACAAGTACTAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F13+           CTGGGGCTCCTCGGTTTTCTCGATTCCCACCCTCATTCCGAAAACGACCGGTCTTTCGTT
JMSF031E10+           CTGGGGCTCCTCGGTTTTCTCGATTCCCACCCTCATTCCGAAAACGACCGGTCTTTCGTT
JMFN046G13-           CTGGGGCTCCTCGGTTTTCTCGATTCCCACCCTCATTCCGAAAACGACCGGTCTTTCGTT
                      ____________________________________________________________
consensus             CTGGGGCTCCTCGGTTTTCTCGATTCCCACCCTCATTCCGAAAACGACCGGTCTTTCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F13+           TGCCCTATTCGATGCGAAGCCTTATCGAACCTCGACTTCACTCGCCGCTCCTTAATTCCT
JMSF031E10+           TGCCCTATTCGATGCGAAGCCTTATCGAACCTCGACTTCACTCGCCGCTCCTTAATTCCT
JMFN046G13-           TGCCCTATTCGATGCGAAGCCTTATCGAACCTCGACTTCACTCGCCGCTCCTTAATTCCT
                      ____________________________________________________________
consensus             TGCCCTATTCGATGCGAAGCCTTATCGAACCTCGACTTCACTCGCCGCTCCTTAATTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F13+           GAGACTGATCGGGTATGGAACTGTTTTCTCGTATTGGTAAGCACTTTGATGTGAAAGTTT
JMSF031E10+           GAGACTGATCGGGTATGGAACTGTTTTCTCGTATTGGTAAGCACTTTGATGTGAAAGTTT
JMFN046G13-           GAGACTGATCGGGTATGGAACTGTTTTCTCGTATTGGTAAGCACTTTGATGTGAAAGTTT
                      ____________________________________________________________
consensus             GAGACTGATCGGGTATGGAACTGTTTTCTCGTATTGGTAAGCACTTTGATGTGAAAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F13+           TCATAAAATGCAGATTTGGCATGATGCCTTGTGCAGTTCTTGCTGTGACTTACTGCATAA
JMSF031E10+           TCATAAAATGCAGATTTGGCATGATGCCTTGTGCAGTTCTTGCTGTGACTTACTGCATAA
JMFN046G13-           TCATAAAATGCAGATTTGGCATGATGCCTTGTGCAGTTCTTGCTGTGACTTACTGCATAA
                      ____________________________________________________________
consensus             TCATAAAATGCAGATTTGGCATGATGCCTTGTGCAGTTCTTGCTGTGACTTACTGCATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037F13+           AACAGG                                                      
JMSF031E10+           AACAGG                                                      
JMFN046G13-           AACAGGTAACCATTTCAAATCCCATTGTATTCTATTGCTATTAAGACTTGGTGAGAATGA
                      ____________________________________________________________
consensus             AACAGGTAACCATTTCAAATCCCATTGTATTCTATTGCTATTAAGACTTGGTGAGAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046G13-           TTTTGAAGTGGTAGAGGGATGGTAGGCTTGATAGTTTCTTCCTCACTTACAGGAGCCGAG
                      ____________________________________________________________
consensus             TTTTGAAGTGGTAGAGGGATGGTAGGCTTGATAGTTTCTTCCTCACTTACAGGAGCCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046G13-           GCCATTATCACAAAGGGATTTGGACAGAGTTATATCAACATCAAAAAACACATAAGTAGT
                      ____________________________________________________________
consensus             GCCATTATCACAAAGGGATTTGGACAGAGTTATATCAACATCAAAAAACACATAAGTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046G13-           TGCAAGTGAATATAACAGATTCAGTTCACAAACATCTAGATAGTCACGGCAGAGGGACCG
                      ____________________________________________________________
consensus             TGCAAGTGAATATAACAGATTCAGTTCACAAACATCTAGATAGTCACGGCAGAGGGACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046G13-           AGACAATTATCAGGGTTCAGCTGCAATCAGCGAGCTCTCAAGCTCGTCCTTTCACAATTA
                      ____________________________________________________________
consensus             AGACAATTATCAGGGTTCAGCTGCAATCAGCGAGCTCTCAAGCTCGTCCTTTCACAATTA