| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN033I16 | Sequence | 642 | 013067 (5) | ref|XP_007038436.1| | 1e-77 | Ribosomal protein S10p/S20e family protein isoform 1 [Theobroma cacao] ref|XP_0 | |||||
| JMFN044F04 | Sequence | 624 | 013067 (5) | ref|XP_007038436.1| | 8e-78 | Ribosomal protein S10p/S20e family protein isoform 1 [Theobroma cacao] ref|XP_0 | |||||
| JMSF025O19 | Sequence | 128 | 013067 (5) | ref|XP_009615856.1| | 9e-11 | PREDICTED: 40S ribosomal protein S20-2 [Nicotiana tomentosiformis] ref|XP_009791 | |||||
| JMSF049C09 | Sequence | 603 | 013067 (5) | ref|XP_007038436.1| | 1e-78 | Ribosomal protein S10p/S20e family protein isoform 1 [Theobroma cacao] ref|XP_0 | 556 | 013067 (5) | ref|XP_007038436.1| | 8e-79 | Ribosomal protein S10p/S20e family protein isoform 1 [Theobroma cacao] ref|XP_0 |
This contig is upended
. : . : . : . : . : . :
JMFN033I16+ TGCGGGAAAATTACACCACATGAATTCGCAAAATTCTCGTTGT
JMFN044F04+ ATGAATTCGCAAAATTCTCGTTGT
____________________________________________________________
consensus TGCGGGAAAATTACACCACATGAATTCGCAAAATTCTCGTTGT
. : . : . : . : . : . :
rJMSF049C09- G
JMFN033I16+ CACATCATGTCTTTCTTAACTTGGAAAATATAATACCAAAACTCATAATAGAGTACACAG
JMFN044F04+ CACATCATGTCTTTCTTAACTNGGAAAATATAATACCAAAACTCATAATAGAGTACACAG
____________________________________________________________
consensus CACATCATGTCTTTCTTAACTTGGAAAATATAATACCAAAACTCATAATAGAGTACACAG
. : . : . : . : . : . :
rJMSF049C09- TCTACAATATTTAAGGGCACAGTTTGGAGGCTGGAAAGAAAAAATCCAAAACAGCCATCA
JMFN033I16+ TCTACAATATTTAAGGGCACAGTTTGGAGGCTGGAAAGAAAAAATCCAAAACAGCCATCA
JMFN044F04+ TCTACAATATTTAAGGGCACAGTTTGGAGGCTGGAAAGAAAAAATCCAAAACAGCCATCA
____________________________________________________________
consensus TCTACAATATTTAAGGGCACAGTTTGGAGGCTGGAAAGAAAAAATCCAAAACAGCCATCA
. : . : . : . : . : . :
rJMSF049C09- CTGGAAGCACAAACCAAAATTAAAACTAAGCGATGTTGCTGAAGTTTTAAGAATCAGCAA
JMSF049C09+ AAGAATCAGCAA
JMFN033I16+ CTGGAAGCACAAACCAAAATTAAAACTAAGCGATGTTGCTGAAGTTTTAAGAATCAGCAA
JMFN044F04+ CTGGAAGCACAAACCAAAATTAAAACTAAGCGATGTTGCTGAAGTTTTAAGAATCAGCAA
____________________________________________________________
consensus CTGGAAGCACAAACCAAAATTAAAACTAAGCGATGTTGCTGAAGTTTTAAGAATCAGCAA
. : . : . : . : . : . :
rJMSF049C09- TTGTAACCTCGACCTCTACCCCAGGTTCAATGGTGATAGATGTGATCTGCTTTACAACTT
JMSF049C09+ TTGTAACCTCGACCTCTACCCCAGGTTCAATGGTGATAGATGTGATCTGCTTTACAACTT
JMFN033I16+ TTGTAACCTCGACCTCTACCCCAGGTTCAATGGTGATAGATGTGATCTGCTTTACAACTT
JMFN044F04+ TTGTAACCTCGACCTCTACCCCAGGTTCAATGGTGATAGATGTGATCTGCTTTACAACTT
____________________________________________________________
consensus TTGTAACCTCGACCTCTACCCCAGGTTCAATGGTGATAGATGTGATCTGCTTTACAACTT
. : . : . : . : . : . :
rJMSF049C09- CTGGGGAACTGAACAGGTCAATCACTCGCTTGTGAACACGGAGCTCAAATCTATCCCATG
JMSF049C09+ CTGGGGAACTGAACAGGTCAATCACTCGCTTGTGAACACGGAGCTCAAATCTATCCCATG
JMFN033I16+ CTGGGGAACTGAACAGGTCAATCACTCGCTTGTGAACACGGAGCTCAAATCTATCCCATG
JMFN044F04+ CTGGGGAACTGAACAGGTCAATCACTCGCTTGTGAACACGGAGCTCAAATCTATCCCATG
____________________________________________________________
consensus CTGGGGAACTGAACAGGTCAATCACTCGCTTGTGAACACGGAGCTCAAATCTATCCCATG
. : . : . : . : . : . :
rJMSF049C09- TGTTGGTACCTTCTCCACAGGGAGACTTTCTAGTGGTGATGTGAAGAACCTTGGTTGGCA
JMSF049C09+ TGTTGGTACCTTCTCCACAGGGAGACTTTCTAGTGGTGATGTGAAGAACCTTGGTTGGCA
JMFN033I16+ TGTTGGTACCTTCTCCACAGGGAGACTTTCTAGTGGTGATGTGAAGAACCTTGGTTGGCA
JMFN044F04+ TGTTGGTACCTTCTCCACAGGGAGACTTTCTAGTGGTGATGTGAAGAACCTTGGTTGGCA
____________________________________________________________
consensus TGTTGGTACCTTCTCCACAGGGAGACTTTCTAGTGGTGATGTGAAGAACCTTGGTTGGCA
. : . : . : . : . : . :
rJMSF049C09- TCCTCACTGGTCCCTTAACCCGGAGTCTTTTATCCTTGGCACCACGTACCAAATCAGCAC
JMSF049C09+ TCCTCACTGGTCCCTTAACCCGGAGTCTTTTATCCTTGGCACCACGTACCAAATCAGCAC
JMFN033I16+ TCCTCACTGGTCCCTTAACCCGGAGTCTTTTATCCTTGGCACCACGTACCAAATCAGCAC
JMFN044F04+ TCCTCACTGGTCCCTTAACCCGGAGTCTTTTATCCTTGGCACCACGTACCAAATCAGCAC
____________________________________________________________
consensus TCCTCACTGGTCCCTTAACCCGGAGTCTTTTATCCTTGGCACCACGTACCAAATCAGCAC
. : . : . : . : . : . :
rJMSF049C09- AAACTTTCTCGAGGTTTTTGACGTTTTTCGATGACAGAGTGATTCTGATCTTGTGCACCT
JMSF049C09+ AAACTTTCTCGAGGTTTTTGACGTTTTTCGATGACAGAGTGATTCTGATCTTGTGCACCT
rJMSF025O19- CTTTCTCGAGGTTTTTGACGTTTTTCNATGACAGAGTGATTCNGATCTTGTGCACCT
JMFN033I16+ AAACTTTCTCGAGGTTTTTGACGTTTTTCGATGACAGAGTGATTCTGATCTTGTGCACCT
JMFN044F04+ AAACTTTCTCGAGGTTTTTGACGTTTTTCGATGACAGAGTGATTCTGATCTTGTGCACCT
____________________________________________________________
consensus AAACTTTCTCGAGGTTTTTGACGTTTTTCGATGACAGAGTGATTCTGATCTTGTGCACCT
. : . : . : . : . : . :
rJMSF049C09- GTTCCTGTGGCTCCTCTAGCCCGGGCTTTGTCGACTTCACCGCTTG
JMSF049C09+ GTTCCTGTGGCTCCTCTAGCCCGGGCTTTGTCGACTTCACCGCTTG
rJMSF025O19- GTTCCTGTGGCTCCTCTAGCCCGGGGTTTGTCGACTTCACCGCTTGNTANGCCATAACTT
JMFN033I16+ GTTCCTGTGGCTCCTCTAGCCCGGGCTTTGTCGACTTCACCGCTTGGTATGCCATAACTT
JMFN044F04+ GTTCCTGTGGCTCCTCTAGCCCGGGCTTTGTCGACTTCACCGCTTGGTATGCCATAACTT
____________________________________________________________
consensus GTTCCTGTGGCTCCTCTAGCCCGGGCTTTGTCGACTTCACCGCTTGGTATGCCATAACTT
. : . : . : . : . : . :
rJMSF025O19- GGATTTGCTTT
JMFN033I16+ GGATTTGCTTTCTGCGGCGAGAAGTGGAGTACTCCGGCTGATGCAGAGATGAACTTCAG
JMFN044F04+ GGATTTGCTTTCTGCGGCGAGAAGTGGAGTACTCCGGCTGATGCAGAGATGAACTTCAGA
____________________________________________________________
consensus GGATTTGCTTTCTGCGGCGAGAAGTGGAGTACTCCGGCTGATGCAGAGATGAACTTCAGA