Contig 013063:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN029L12Sequence426013063 (3)ref|XP_006354867.1|3e-50PREDICTED: RING finger protein B-like [Solanum tuberosum]
JMFN042O11Sequence589013063 (3)gb|ABB77434.1|3e-44S-RNase-binding protein [Petunia integrifolia subsp. inflata]
JMSF032D13Sequence708017870gb|ACD40009.1|1e-100SBP1 [Nicotiana alata]684013063 (3)gb|ACD40009.1|4e-109SBP1 [Nicotiana alata]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-                                                      ACAAGTCAACAAAGAA
                      ____________________________________________________________
consensus                                                         ACAAGTCAACAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          AGCAGAATGGAAAAATACAGTCACCCGAGGTAATGTCGACTATCGGACTGATTCATAATA
                      ____________________________________________________________
consensus             AGCAGAATGGAAAAATACAGTCACCCGAGGTAATGTCGACTATCGGACTGATTCATAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          TTTTATTACATATAAACTTCCATACCTAGGTATTTACTGGACTGACACACAGGACAAAGT
                      ____________________________________________________________
consensus             TTTTATTACATATAAACTTCCATACCTAGGTATTTACTGGACTGACACACAGGACAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          CTAAGCTTACTTTCACATTCTTTACACAGGCAGAGATGCTTACAGGGAAAAAGTAGCATG
                      ____________________________________________________________
consensus             CTAAGCTTACTTTCACATTCTTTACACAGGCAGAGATGCTTACAGGGAAAAAGTAGCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          CATACTTCATTGACTCTACAAAATTTACAAGTCATCAACTTCTTCATTCCATTTTTATCC
                      ____________________________________________________________
consensus             CATACTTCATTGACTCTACAAAATTTACAAGTCATCAACTTCTTCATTCCATTTTTATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          TGGGAAAGCAGGTGAAAATCAATGGCACGCCCATTACAAAAGGATGCTGTATCATCCACC
                      ____________________________________________________________
consensus             TGGGAAAGCAGGTGAAAATCAATGGCACGCCCATTACAAAAGGATGCTGTATCATCCACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          TCACTATCACCACATCCTTCTTTACTATCTATATTTTGAGCATAAACCTGCTGTAAATTG
                      ____________________________________________________________
consensus             TCACTATCACCACATCCTTCTTTACTATCTATATTTTGAGCATAAACCTGCTGTAAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          AACTTGAGAGTGTGAATCAGGTTTTCATTGTATTTGGCTCGCTGTTGCCAAGCATCAGCC
                      ____________________________________________________________
consensus             AACTTGAGAGTGTGAATCAGGTTTTCATTGTATTTGGCTCGCTGTTGCCAAGCATCAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          TCCATAGATAGTTTGTCCATTTGCATTTCAAGCTCCAAATTTTTTTTGTTGATGTATTCA
                      ____________________________________________________________
consensus             TCCATAGATAGTTTGTCCATTTGCATTTCAAGCTCCAAATTTTTTTTGTTGATGTATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          GCCTCTGCCTCTTTCTCGTTTAGCTTTTGAATGATCTTTTCTTCAAGATAGGAGATAGTC
                      ____________________________________________________________
consensus             GCCTCTGCCTCTTTCTCGTTTAGCTTTTGAATGATCTTTTCTTCAAGATAGGAGATAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          TGGAGTTGACTTGCCTGCACCTTCTCTAAGATAGCCTGCCTTAATTGATCACCCTGGACC
JMFN029L12+                                                                     CC
                      ____________________________________________________________
consensus             TGGAGTTGACTTGCCTGCACCTTCTCTAAGATAGCCTGCCTTAATTGATCACCCTGGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          TTAACGTATCTATCAATTTCA-GCATCAAGGCTCTGTAACTTCCGTTCAATGTCATCCCC
JMFN029L12+           TTAACGTATCTATCAATTTCAGGCATCAAGGCTCTGTAACTTCCGTTCAATGTCATCCCC
JMFN042O11+                                                      CGTTCAATGTCATCCCC
                      ____________________________________________________________
consensus             TTAACGTATCTATCAATTTCAGGCATCAAGGCTCTGTAACTTCCGTTCAATGTCATCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032D13-          TGACAGACC                                                   
JMFN029L12+           TGACAGACCGAGAAAAGATGAGTCCCCAGATGATGCCAGTCGGCCATTGTCGAGAGACAA
JMFN042O11+           AGAAAGACCCAGAAAGGACGAGTCCCCGGATGACGCCAATCGCCCATTATCAAGGGACAA
                      ____________________________________________________________
consensus             TGACAGACCGAGAAAGGATGAGTCCCCGGATGATGCCAGTCGGCCATTGTCGAGGGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN029L12+           GCCGAGCCCAGTGGACACTGACCGCCGCTGCAAGAAGTCCACTGAAGATATCTGAGAATT
JMFN042O11+           TCCGAGGCCAGTAGACACTGATCGTGGCTGCAAGAAGTCCAGAGAAGATATCTGAGAATT
                      ____________________________________________________________
consensus             TCCGAGGCCAGTGGACACTGATCGTGGCTGCAAGAAGTCCAGTGAAGATATCTGAGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN029L12+           GTTCTCCAGAAAATCCTGCTCCTCGGGTCTCTTCTTC                       
JMFN042O11+           GTTCTCCAGAAAATCTTGCTCCTTTGGCCTCTTCTTCTTCGGCTCCAACCCATAATTCCA
                      ____________________________________________________________
consensus             GTTCTCCAGAAAATCTTGCTCCTTTGGTCTCTTCTTCTTCGGCTCCAACCCATAATTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042O11+           CTGCAAATCCTGCCCACTTTCCTCCACAGTACCAGGAGCTAATCCGGCCACTTGAACTGA
                      ____________________________________________________________
consensus             CTGCAAATCCTGCCCACTTTCCTCCACAGTACCAGGAGCTAATCCGGCCACTTGAACTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042O11+           CACCCAAGGTATCAAAAAAAAAACACAAATTTACGAATTAAATCAAATTCACATAACAAA
                      ____________________________________________________________
consensus             CACCCAAGGTATCAAAAAAAAAACACAAATTTACGAATTAAATCAAATTCACATAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042O11+           TATCGAGTAATTAGCTTAAATAAGATCAGAGGAATCGTACAAGGAGGAATATAAGGAGGA
                      ____________________________________________________________
consensus             TATCGAGTAATTAGCTTAAATAAGATCAGAGGAATCGTACAAGGAGGAATATAAGGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042O11+           TGCTGAGACTGATCGGGAAGATTAGGGCCGTTGAAGTAAGCCACAGGCTGTGAAATCTGA
                      ____________________________________________________________
consensus             TGCTGAGACTGATCGGGAAGATTAGGGCCGTTGAAGTAAGCCACAGGCTGTGAAATCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042O11+           CCCTCCACGTTATATAAATCTCTGAAAGCTTTGGATTGTTGGTGTGGTTGAGGCGGCGGT
                      ____________________________________________________________
consensus             CCCTCCACGTTATATAAATCTCTGAAAGCTTTGGATTGTTGGTGTGGTTGAGGCGGCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042O11+           TGCTGGAAGTGTTTCTGCTGAGGAAAAGCCATAGCTATGGTGGAGTGTAGAGAGAGAAAG
                      ____________________________________________________________
consensus             TGCTGGAAGTGTTTCTGCTGAGGAAAAGCCATAGCTATGGTGGAGTGTAGAGAGAGAAAG