Contig 013055:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013M15Sequence558013055 (4)ref|XP_006345459.1|110PREDICTED: uncharacterized protein LOC102594199 [Solanum tuberosum]
JMFN016D14Sequence519013055 (4)ref|XP_006345459.1|111PREDICTED: uncharacterized protein LOC102594199 [Solanum tuberosum]
JMFN039I09Sequence591013055 (4)ref|XP_006345459.1|111PREDICTED: uncharacterized protein LOC102594199 [Solanum tuberosum]
JMFN040M22Sequence543013055 (4)ref|XP_006345459.1|110PREDICTED: uncharacterized protein LOC102594199 [Solanum tuberosum]

Alignment

This contig is upended


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JMFN013M15+                                                                 GGGATC
                      ____________________________________________________________
consensus                                                                   GGGATC
 
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JMFN013M15+           AAATTTCTGCATAGAAGAACATAGCAGAAGTACTGGAACCTGATAAGCCCTTTTATTCCT
JMFN016D14+                                          ACTGGAACCTGATAAGCCCTTTTATTCCT
JMFN040M22+                                 AGCAGAAGTACTGGAACCTGATAAGCCCTTTTATTCCT
                      ____________________________________________________________
consensus             AAATTTCTGCATAGAAGAACATAGCAGAAGTACTGGAACCTGATAAGCCCTTTTATTCCT
 
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JMFN013M15+           GCTCTTTATTTACATCATCATTAATTTTTCCGAACTAACAATCACAAGAAAAGAAAAGTG
JMFN016D14+           GCTCTTTATTTACATCATCATTAATTTTTCCGAACCAACAATCACAAGAAAAGAAAAGTG
JMFN040M22+           GCTCTTTATTTACATCATCATTAATTTTTCCGAACCAACAATCACAAGAAAAGAAAAGTG
JMFN039I09+                                    TTTTCCGAACCAACAATCACAAGAAAAGAAAAGTG
                      ____________________________________________________________
consensus             GCTCTTTATTTACATCATCATTAATTTTTCCGAACCAACAATCACAAGAAAAGAAAAGTG
 
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JMFN013M15+           AAAAACCCAGATGAAATCGAGGCTTCCCATGATTAAACTCTGAGGGAGAAGAACAATTTA
JMFN016D14+           AAAAACCCAGATGAAATCGAGGCTTCCCATGATTAAACTCTGAGGGAGAAGAACAATTTA
JMFN040M22+           AAAAACCCAGATGAAATCGAGGCTTCCCATGATTAAACTCTGAGGGAGAAGAACAATTTA
JMFN039I09+           AAAAACCCAGATGAAATCGAGGCTTCCCATGATTAAACTCTGAGGGAGAAGAACAATTTA
                      ____________________________________________________________
consensus             AAAAACCCAGATGAAATCGAGGCTTCCCATGATTAAACTCTGAGGGAGAAGAACAATTTA
 
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JMFN013M15+           CAGGCTACAGAGGGTGGAGTTTTCCTAGGTTGAAGATCCCAGAGAAACAGAGAGAATCAC
JMFN016D14+           CAGGCTACAGAGGGTGGAGTTTTCCTAGGTTGAAGATCCCAGAGAAACAGAGAGAATCAC
JMFN040M22+           CAGGCTACAGAGGGTGGAGTTTTCCTAGGTTGAAGATCCCAGAGAAACAGAGAGAATCAC
JMFN039I09+           CAGGCTACAGAGGGTGGAGTTTTCCTAGGTTGAAGATCCCAGAGAAACAGAGAGAATCAC
                      ____________________________________________________________
consensus             CAGGCTACAGAGGGTGGAGTTTTCCTAGGTTGAAGATCCCAGAGAAACAGAGAGAATCAC
 
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JMFN013M15+           CTGGTGGTGTTGCAGAGCATACAGTTCAAGATCCTGAGCCAGGCATGGCGGAAACGGGGA
JMFN016D14+           CTGGTGGTGTTGCAGAGCATACAGTTCAAGATCCTGAGCCAGGCATGGCGGAAACGGGGA
JMFN040M22+           CTGGTGGTGTTGCAGAGCATACAGTTCAAGATCCTGAGCCAGGCATGGCGGAAACGGGGA
JMFN039I09+           CTGGTGGTGTTGCAGAGCATACAGTTCAAGATCCTGAGCCAGGCATGGCGGAAACGGGGA
                      ____________________________________________________________
consensus             CTGGTGGTGTTGCAGAGCATACAGTTCAAGATCCTGAGCCAGGCATGGCGGAAACGGGGA
 
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JMFN013M15+           TAAACCCGGCCGGTGTAAGAGCTGGACTCCCTCCAGAGATCTTCCATGGACTCCATGAAC
JMFN016D14+           TAAACCCGGCCGGTGTAAGAGCTGGACTCCCTCCAGAGATCTTCCATGGACTCCATGAAC
JMFN040M22+           TAAACCCGGCCGGTGTAAGAGCTGGACTCCCTCCAGAGATCTTCCATGGACTCCATGAAC
JMFN039I09+           TAAACCCGTCCGGTGTAAGAGCTGGACTCCCTCCAGAGATCTTCCATGGACTCCATGAAC
                      ____________________________________________________________
consensus             TAAACCCGGCCGGTGTAAGAGCTGGACTCCCTCCAGAGATCTTCCATGGACTCCATGAAC
 
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JMFN013M15+           AGGTTGAGCCTTCTTATGGGAGGGACGTAGAGAGTCAACGGCACGGCCGAGAACGCCATG
JMFN016D14+           AGGTTGAGCCTTCTTATGGGAGGGACGTAGAGAGTCAACGGCACGGCCGAGAACGCCATG
JMFN040M22+           AGGTTGAGCCTTCTTATGGGAGGGACGTAGAGAGTCAACGGCACGGCCGAGAACGCCATG
JMFN039I09+           AGGTTGAGCATTCTTATGGGAGGGACGTAGAGAGTCAACGGCACGGCCGAGAACGCCATG
                      ____________________________________________________________
consensus             AGGTTGAGCCTTCTTATGGGAGGGACGTAGAGAGTCAACGGCACGGCCGAGAACGCCATG
 
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JMFN013M15+           GCAAATAACAACTGCAGCATCTTCACCCTTTTCACTTCGAGTTTACTGGAAGAAGATGAT
JMFN016D14+           GCAAATAACAACTGCAGCATCTTCACCCTTTTCACTTCGAGTTTACTGGAAGAAGATGAT
JMFN040M22+           GCAAATAACAACTGCAGCATCTTCACCCTTTTCACTTCGAGTTTACTGGAAGAAGATGAT
JMFN039I09+           GCAAATAACAACTGCAGCATCTTCACCCTTTTCACTTCGAGTTTACTGGAAGAAGATGAT
                      ____________________________________________________________
consensus             GCAAATAACAACTGCAGCATCTTCACCCTTTTCACTTCGAGTTTACTGGAAGAAGATGAT
 
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JMFN013M15+           GAAAGAAGAGGTCGGAAATTGGAATCTTGCTTGCTGATAGGCGCCCAGAAAATGTT    
JMFN016D14+           -AAAGAAGAGGTCGGAAATTGGAATCTTGCTTGCTGATAGGCGCCCAGAAAATGTT    
JMFN040M22+           GAAAGAAGAGGTCGGAAATTGGAATCTTGCTTGCTGATAGGCGCCCAGAAAATGTTTGGG
JMFN039I09+           GAAAGAAGAGGTCGGAAATTGGAATCTTGCTTGCTGATAGGCGCCCAGAAAATGTTTGGG
                      ____________________________________________________________
consensus             GAAAGAAGAGGTCGGAAATTGGAATCTTGCTTGCTGATAGGCGCCCAGAAAATGTTTGGG
 
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JMFN040M22+           TTTTCTTGTAAATTGTGATGAAGAA                                   
JMFN039I09+           TTTTCTTGTAAATTGGTATGAAGAAGTTGAGAAGGAGTTAAGGATTTTTTTTGTTTTCTG
                      ____________________________________________________________
consensus             TTTTCTTGTAAATTGTTATGAAGAAGTTGAGAAGGAGTTAAGGATTTTTTTTGTTTTCTG
 
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JMFN039I09+           AATTGTTTATATATCCCTGAGCCTGACTGGTGGGTCTTCAATTTTGGGAAGAAGATAAGA
                      ____________________________________________________________
consensus             AATTGTTTATATATCCCTGAGCCTGACTGGTGGGTCTTCAATTTTGGGAAGAAGATAAGA