Contig 013046:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031J09Sequence586016303ref|XP_009757388.1|3e-36PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP564013046 (9)ref|XP_009757388.1|3e-36PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP
JMFN007H12Sequence550013046 (9)ref|XP_009757388.1|2e-36PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP
JMFN033B24Sequence591013046 (9)ref|XP_009757388.1|3e-23PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP
JMFN034N10Sequence482013046 (9)ref|XP_009757388.1|1e-36PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP
JMFS039C01Sequence509013046 (9)ref|XP_009757388.1|2e-36PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP
JMSF010O07Sequence206013046 (9)ref|XP_009757388.1|9e-11PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP454013046 (9)ref|XP_009757388.1|8e-37PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP
JMSF013N16Sequence432013046 (9)ref|XP_009757388.1|6e-37PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP486013046 (9)ref|XP_009757388.1|1e-36PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP

Alignment

This contig is upended


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rJMSF013N16-                              ATTTGAATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
JMFN007H12+                   GATCACATAACAATTTGAATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
JMFS039C01+                                                            CAAGCCCAATG
JMFN034N10+                                       AGAAAATAGTATAGTAAGATTCAAGCCCAATG
rJMFF031J09-                                   AATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
JMFN033B24+                                    AATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
                      ____________________________________________________________
consensus                     GATCACATAACAATTTGAATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
 
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rJMSF013N16-          TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMFN007H12+           TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMFS039C01+           TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMFN034N10+           TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
rJMSF010O07-                                    AGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMSF013N16+                         AAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
rJMFF031J09-          TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMFN033B24+           TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
                      ____________________________________________________________
consensus             TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
 
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rJMSF013N16-          ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMFN007H12+           ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMFS039C01+           ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMFN034N10+           ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
rJMSF010O07-          ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMSF013N16+           ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
rJMFF031J09-          ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMFN033B24+           ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
                      ____________________________________________________________
consensus             ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
 
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rJMSF013N16-          TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMFN007H12+           TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMFS039C01+           TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMFN034N10+           TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
rJMSF010O07-          TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMSF013N16+           TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
rJMFF031J09-          TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMFN033B24+           TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
                      ____________________________________________________________
consensus             TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
 
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rJMSF013N16-          GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMFN007H12+           GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMFS039C01+           GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMFN034N10+           GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
rJMSF010O07-          GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMSF013N16+           GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
rJMFF031J09-          GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMFN033B24+           GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
                      ____________________________________________________________
consensus             GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
 
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rJMSF013N16-          GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMFN007H12+           GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMFS039C01+           GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMFN034N10+           GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
rJMSF010O07-          GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMSF013N16+           GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMSF010O07+                                            TAGCACATGCCTGATATTCCCGGAGCT
rJMFF031J09-          GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMFN033B24+           G-TTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
                      ____________________________________________________________
consensus             GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
 
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rJMSF013N16-          GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMFN007H12+           GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMFS039C01+           GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMFN034N10+           GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
rJMSF010O07-          GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMSF013N16+           GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMSF010O07+           GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
rJMFF031J09-          GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMFN033B24+           GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
                      ____________________________________________________________
consensus             GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
 
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rJMSF013N16-          CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMFN007H12+           CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMFS039C01+           CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMFN034N10+           CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
rJMSF010O07-          CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMSF013N16+           CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMSF010O07+           CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
rJMFF031J09-          CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMFN033B24+           CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
                      ____________________________________________________________
consensus             CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
 
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rJMSF013N16-          GTCGATCGGGTGGTGTGTTTGAGGC                                   
JMFN007H12+           GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
JMFS039C01+           GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
JMFN034N10+           GTCGATCGGGTGGTGTGTTTGAGGCGGCGA                              
rJMSF010O07-          GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTC  
JMSF013N16+           GTCGATCGGGTGGTGTGTTTGAGGC                                   
JMSF010O07+           GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTC  
rJMFF031J09-          GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
JMFN033B24+           GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
                      ____________________________________________________________
consensus             GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
 
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JMFN007H12+           TGGTGCGTGCCGTTCCCG                                          
JMFS039C01+           TGGTGCGTGCCGTTCCCG                                          
rJMFF031J09-          TGGTGCGTGCCGTTCCCGTCCTATTACC                                
JMFN033B24+           TGGTGCGTGCCGTTCCCGTCCTATTACCACTGCCCAGGCGCGTTCGTTGCGTTTGTGGAA
                      ____________________________________________________________
consensus             TGGTGCGTGCCGTTCCCGTCCTATTACCACTGCCCAGGCGCGTTCGTTGCGTTTGTGGAA