Contig 013045:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K02Sequence546013045 (3)ref|XP_009762383.1|7e-79PREDICTED: probable CCR4-associated factor 1 homolog 9 [Nicotiana sylvestris] r740013045 (3)ref|XP_009627291.1|2e-121PREDICTED: probable CCR4-associated factor 1 homolog 9 [Nicotiana tomentosiform
JMFN032K18Sequence627013045 (3)ref|XP_009762383.1|3e-94PREDICTED: probable CCR4-associated factor 1 homolog 9 [Nicotiana sylvestris] r

Alignment

This contig is upended


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rJMFF005K02- ATTTTCTTTTTTTTTATATTAAGCAAATGG
                      ____________________________________________________________
consensus ATTTTCTTTTTTTTTATATTAAGCAAATGG
 
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rJMFF005K02- ATTGTACAGCTTAACTGAGAAATTTCAACCGAGGACTCGTAATCTACAGAGCCTACAGAG
                      ____________________________________________________________
consensus ATTGTACAGCTTAACTGAGAAATTTCAACCGAGGACTCGTAATCTACAGAGCCTACAGAG
 
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rJMFF005K02- AGAAGATCTCTAACCCATAAAGAACGCCGGCATACTTTTCAGTAAGAGCCTCTTTGTCCT
                      ____________________________________________________________
consensus AGAAGATCTCTAACCCATAAAGAACGCCGGCATACTTTTCAGTAAGAGCCTCTTTGTCCT
 
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rJMFF005K02- CAAAGTATGACTTCCTGATCTGCTGAAAAGCATGCCAAGTAAGCAAGCTATCCGAGCCGG
                      ____________________________________________________________
consensus CAAAGTATGACTTCCTGATCTGCTGAAAAGCATGCCAAGTAAGCAAGCTATCCGAGCCGG
 
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rJMFF005K02- CCTGGTGACACTTCCCGACATCCCGGTTCACCTGAAGCATACTGGCAACACGGTCCAACC
                      ____________________________________________________________
consensus CCTGGTGACACTTCCCGACATCCCGGTTCACCTGAAGCATACTGGCAACACGGTCCAACC
 
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rJMFF005K02- CGCCATGGAGATTTGAGCAGAACTTCATCAAGTGTTTCACATCATAAACCTTGTTCCCGA
                      ____________________________________________________________
consensus CGCCATGGAGATTTGAGCAGAACTTCATCAAGTGTTTCACATCATAAACCTTGTTCCCGA
 
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rJMFF005K02- AGAACACATTCAGCAATTCGAGGAATTCCCCAAGTGTCCCGGGCAGGTCGCGGCCGCAGA
JMFN032K18+ GTGTCCCGGGCAGGTCGCGGCCGCAGA
                      ____________________________________________________________
consensus AGAACACATTCAGCAATTCGAGGAATTCCCCAAGTGTCCCGGGCAGGTCGCGGCCGCAGA
 
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rJMFF005K02- GGGCTTTGATCAGGTATCCAAAGTCATAACCGCTGTGGAAGGTGATGTAGGTGACGTCAT
JMFF005K02+ GATGTAGGTGACGTCAT
JMFN032K18+ GGGCTTTGATCAGGTATCCAAAGTCATAACCGCTGTGGAAGGTGATGTAGGTGACGTCAT
                      ____________________________________________________________
consensus GGGCTTTGATCAGGTATCCAAAGTCATAACCGCTGTGGAAGGTGATGTAGGTGACGTCAT
 
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rJMFF005K02- CGTTGCAGACGAGGCCGGAAGACATCATCAGCTCCGCAAAGCGGGCGGTATCGGCGCCAC
JMFF005K02+ CGTTGCAGACGAGGCCGGAAGACATCATCAGCTCCGCAAAGCGGGCGGTATCGGCGCCAC
JMFN032K18+ CGTTGCAGACGAGGCCGGAAGACATCATCAGCTCCGCAAAGCGGGCGGTATCGGCGCCAC
                      ____________________________________________________________
consensus CGTTGCAGACGAGGCCGGAAGACATCATCAGCTCCGCAAAGCGGGCGGTATCGGCGCCAC
 
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rJMFF005K02- AAGCTTGTGTCTTTTCGAAATCAATCCCCTGCTGCCGGAGGAGCTCAATAGATCCCGGAG
JMFF005K02+ AAGCTTGTGTCTTTTCGAAATCAATCCCCTGCTGCCGGAGGAGCTCAATAGATCCCGGAG
JMFN032K18+ AAGCTTGTGTCTTTTCGAAATCAATCCCCTGCTGCCGGAGGAGCTCAATAGATCCCGGAG
                      ____________________________________________________________
consensus AAGCTTGTGTCTTTTCGAAATCAATCCCCTGCTGCCGGAGGAGCTCAATAGATCCCGGAG
 
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rJMFF005K02- CGTGGTCGTCACGCCCCACGTCAAAGTCACAGAAGTTGAACTCCCAAATGTANCGGAAGG
JMFF005K02+ CGTGGTCGTCACGCCCCACGTCAAAGTCACAGAAGTTGAACTCCCAAATGTAGCGGAAGG
JMFN032K18+ CGTGGTCGTCACGCCCCACGTCAAAGTCACAGAAGTTGAACTCCCAAATGTAGCGGAAGG
                      ____________________________________________________________
consensus CGTGGTCGTCACGCCCCACGTCAAAGTCACAGAAGTTGAACTCCCAAATGTAGCGGAAGG
 
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rJMFF005K02- GGGAGGAGAGGTCGGGTAAGTTCCCAGAAGCATCAGTTAGAGTGATCCCCACCTGAATCA
JMFF005K02+ GGGAGGAGAGGTCGGGTAAGTTCCCAGAAGCATCAGTTAGAGTGATCCCCACCTGAATCA
JMFN032K18+ GGGAGGAGAGGTCGGGTAAGTTCCCAGAAGCATCAGTTAGAGTGATCCCCACCTGAATCA
                      ____________________________________________________________
consensus GGGAGGAGAGGTCGGGTAAGTTCCCAGAAGCATCAGTTAGAGTGATCCCCACCTGAATCA
 
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rJMFF005K02- ACTTAAGGGCATCTACGTTCGACTTAAGAGTTTTATAATGCTCGTCCGGG
JMFF005K02+ ACTTAAGGGCATCTACGTTCGACTTAAGAGTTTTATAATGCTCGTCCGGGTCCCGAGACC
JMFN032K18+ ACTTAAGGGCATCTACGTTCGACTTAAGAGTTTTATAATGCTCGTCCGGGTCCCGAGACC
                      ____________________________________________________________
consensus ACTTAAGGGCATCTACGTTCGACTTAAGAGTTTTATAATGCTCGTCCGGGTCCCGAGACC
 
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JMFF005K02+ GGAGCTCCCGCCGGAAAACCACGCCAGGGAACTCAGTATCCATGGACACGAAAGAGTAAC
JMFN032K18+ GGAGCTCCCGCCGGAAAACCACGCCAGGGAACTCAGTATCCATGGACACGAAAGAGTAAC
                      ____________________________________________________________
consensus GGAGCTCCCGCCGGAAAACCACGCCAGGGAACTCAGTATCCATGGACACGAAAGAGTAAC
 
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JMFF005K02+ GGTCAACCAGACAACGGATTAAGGCGATTTCGGAGTCGAGGTTTTCGGCCCAAACGGATC
JMFN032K18+ GGTCAACCAGACAACGGATTAAGGCGATTTCGGAGTCGAGGTTTTCGGCCCAAACGGATC
                      ____________________________________________________________
consensus GGTCAACCAGACAACGGATTAAGGCGATTTCGGAGTCGAGGTTTTCGGCCCAAACGGATC
 
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JMFF005K02+ GGATCTGAATCGGCTTCTTGGAATCAACTATGAGCGGCGGCGCCTCCTGGGGCGGCGGAA
JMFN032K18+ GGATCTGAATCGGCTTCTTGGAATCAACTATGAGCGGCGGCGCCTCCTGGGGCGGCGGAA
                      ____________________________________________________________
consensus GGATCTGAATCGGCTTCTTGGAATCAACTATGAGCGGCGGCGCCTCCTGGGGCGGCGGAA
 
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JMFF005K02+ TCGGGGGAGTTGAGGGGGGCGGAGAGCCTGCGGCCATGGAAGAGAA
JMFN032K18+ TCGGGGGAGTTGAGGGGGGCGGAGAGCCTGCGGCCATGGAAGAGAATCTGAGGACTCCAG
                      ____________________________________________________________
consensus TCGGGGGAGTTGAGGGGGGCGGAGAGCCTGCGGCCATGGAAGAGAATCTGAGGACTCCAG