Contig 013039:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN007E03Sequence553013039 (3)
JMFN014M15Sequence565013039 (3)
JMFN025D15Sequence558013039 (3)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+                                           ATTTATTAATACGAGCAATTCAACTCAT
JMFN014M15+                                           ATTTATTAATACGAGCAATTCAACTCAT
JMFN025D15+                                                     ACGAGCAATTCAACTCAT
                      ____________________________________________________________
consensus                                             ATTTATTAATACGAGCAATTCAACTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           TTTTATTAATATATTTATTAATACAAGCACATAATAAAAGTGGTCTCCCTTTCCCTCTCT
JMFN014M15+           TTTTATTAATATATTTATTAATACAAGCACATAATAAAAGTGGTCTCCCTTTCCCTCTCT
JMFN025D15+           TTTTATTAATATATTTATTAATACAAGCACATAATAAAAGTGGTCTCCCTTTCCCTCTCT
                      ____________________________________________________________
consensus             TTTTATTAATATATTTATTAATACAAGCACATAATAAAAGTGGTCTCCCTTTCCCTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           ATATATTTGGAGCTGACACATATACATGACTAAATCAAAGATGAAGTTGTTGGACATCTC
JMFN014M15+           ATATATTTGGAGCTGACACATATACATGACTAAATCAAAGATGAAGTTGTTGGACATCTC
JMFN025D15+           ATATATTTGGAGCTGACACATATACATGACTAAATCAAAGATGAAGTTGTTGGACATCTC
                      ____________________________________________________________
consensus             ATATATTTGGAGCTGACACATATACATGACTAAATCAAAGATGAAGTTGTTGGACATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           CCAAAAGCTTACGAGGAGGATCTGATCTGCAACGAGTGATGGCACTACAACCTCTGCGGT
JMFN014M15+           CCAAAAGCTTACGAGGAGGATCTGATCTGCAACGAGTGATGGCACTACAACCTCTGCGGT
JMFN025D15+           CCAAAAGCTTACGAGGAGGATCTGATCTGCAACGAGTGATGGCACTACAACCTCTGCGGT
                      ____________________________________________________________
consensus             CCAAAAGCTTACGAGGAGGATCTGATCTGCAACGAGTGATGGCACTACAACCTCTGCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           AGGGGTTGGCCGGTTGTGGCGGCGGACAACCTTTGCCACTGCATGTCGGCGGAGAAGGTG
JMFN014M15+           AGGGGTTGGCCGGTTGTGGCGGCGGACAACCTTTGCCACTGCATGTCGGCGGAGAAGGTG
JMFN025D15+           AGGGGTTGGCCGGTTGTGGCGGCGGACAACCTTTGCCACTGCATGTCGGCGGATAAGGTG
                      ____________________________________________________________
consensus             AGGGGTTGGCCGGTTGTGGCGGCGGACAACCTTTGCCACTGCATGTCGGCGGAGAAGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           GAAATGGTTTAAGGAATTTGGCGTCTACTATTGCCACCTCTCCTAAACATGCGAATGCGA
JMFN014M15+           GAAATGGTTTAAGGAATTTGGCGTCTACTATTGCCACCTCTCCTAAACATGCGAATGCGA
JMFN025D15+           GAAATGGTTTAAGGAATTTGGCGTCTACTATTGCCACCTCTCCTAAACATGCGAATGCGA
                      ____________________________________________________________
consensus             GAAATGGTTTAAGGAATTTGGCGTCTACTATTGCCACCTCTCCTAAACATGCGAATGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           TTGCTACAATAACCCCAAATGCAACCATTCCTCTATTCATCATAGCCATAGCTACCAGAT
JMFN014M15+           TTGCTACAATAACCCCAAATGCAACCATTCCTCTATTCATCATAGCCATAGCTACCAGAT
JMFN025D15+           TTGCTACAATAACCCCAAATGCAACCATTCCTCTATTCATCATAGCCATAGCTACCAGAT
                      ____________________________________________________________
consensus             TTGCTACAATAACCCCAAATGCAACCATTCCTCTATTCATCATAGCCATAGCTACCAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           CAGATCAGATGATGAAATAATAATAATTTCTTGGAATTTGTATGGAAGAATGTCTGTAGG
JMFN014M15+           CAGATCAGATGATGAAATAATAATAATTTCTTGGAATTTGTATGGAAGAATGTCTGTAGG
JMFN025D15+           CAGATCAGATGATGAAATAATAATAATTTCTTGGAATTTGTATGGAAGAATGTCTGTAGG
                      ____________________________________________________________
consensus             CAGATCAGATGATGAAATAATAATAATTTCTTGGAATTTGTATGGAAGAATGTCTGTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           AACTGACGAAGGTTTGGTAGCAGCAGGAAGAGTGCGAAATATAGCTCGCTTCTATGTCCG
JMFN014M15+           AACTGACGAAGGTTTGGTAGCAGCAGGAAGAGTGCGAAATATAGCTCGCTTCTATGTCCG
JMFN025D15+           AACTGACGAAGGTTTGGTAGCAGCAGGAAGAGTGCGAAATATAGCTCGCTTCTATGTCCG
                      ____________________________________________________________
consensus             AACTGACGAAGGTTTGGTAGCAGCAGGAAGAGTGCGAAATATAGCTCGCTTCTATGTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007E03+           TGTTACGAAAACACTTCCTTAAAAGCGAGCTAAATTTCGGGCAAT               
JMFN014M15+           TGTTACGAAAACACTTCCTTAAAAGCGAGCTAAATTTCGGGCAATGGTGCAGTCAGA   
JMFN025D15+           TGTTACGAAAACACTTCCTTAAAAGCGAGCTAAATTTCGGGCAATGGTGCAGTCAGAAAA
                      ____________________________________________________________
consensus             TGTTACGAAAACACTTCCTTAAAAGCGAGCTAAATTTCGGGCAATGGTGCAGTCAGAAAA