Contig 013034:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047E11Sequence526013034 (5)emb|CDO98937.1|9e-61unnamed protein product [Coffea canephora]368013034 (5)ref|XP_011102072.1|9e-11PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like
JMFN011A09Sequence532013034 (5)emb|CDO98937.1|6e-61unnamed protein product [Coffea canephora]
JMFN018P08Sequence531013034 (5)emb|CDO98937.1|4e-61unnamed protein product [Coffea canephora]
JMFN025O20Sequence529013034 (5)emb|CDO98937.1|4e-61unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF047E11-                           ACCCTGGAGAGTTTTTTTTTTTTTTTCXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus                              ACCCTGGAGAGTTTTTTTTTTTTTTTCNNNNNNNNNNNNNNNN
 
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rJMFF047E11-          XXXXGATGAAAATATCTGGTCATATTATACTCAAAACAAGTGAACATTTTTATGCTGCAA
JMFF047E11+                                                                   GCAA
JMFN011A09+                                                                   GCAA
                      ____________________________________________________________
consensus             NNNNGATGAAAATATCTGGTCATATTATACTCAAAACAAGTGAACATTTTTATGCTGCAA
 
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rJMFF047E11-          AGGCAGGTTCAATGGAAGGAATTTTACCAGGATCAATGTCTTACATATGCAATACAAAGA
JMFF047E11+           AGGCAGGTTCAATGGAAGGAATTTACCCAGGATCAATGTCTTACATATGCAATACAAAGA
JMFN011A09+           AGGCAGGTTCAATGGAAGGAATTTTACCAGGATCAATGTCTTACATATGCAATACAAAGA
JMFN025O20+                    CAATGGAAGGAATTTTACCAGGATCAATGTCTTACATATGCAATACAAAGA
JMFN018P08+                    CAATGGAAGGAATTTTACCAGGATCAATGTCTTACATATGCAATACAAAGA
                      ____________________________________________________________
consensus             AGGCAGGTTCAATGGAAGGAATTTTACCAGGATCAATGTCTTACATATGCAATACAAAGA
 
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rJMFF047E11-          TATAAAATCACTTGAAATGTGTTTAATCAAGATGCATCGACTTGTTACAAACTTGTCGAG
JMFF047E11+           TATAAAATCACTGNAAATGTGTTTAATCAAGATGCATCGACTTGTTACAAACTTGTCGAG
JMFN011A09+           TATAAAATCACTTGAAATGTGTTTAATCAAGATGCATCGACTTGTTACAAACTTGTCGAG
JMFN025O20+           TATAAAATCACTTGAAATGTGTTTAATCAAGATGCATCGACTTGTTACAAACTTGTCGAG
JMFN018P08+           TATAAAATCACTTGAAATGTGTTTAATCAAGATGCATCGACTTGTTACAAACTTGTCGAG
                      ____________________________________________________________
consensus             TATAAAATCACTTGAAATGTGTTTAATCAAGATGCATCGACTTGTTACAAACTTGTCGAG
 
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rJMFF047E11-          ATTATTGTGATCATATGATTAGGAAGATTATTTGCCATGAAATCAGAAAGAACATGTCTT
JMFF047E11+           ATTATTGTGATCATATGATTAGGAAGATTATTTGCCATGAAATCAGAAAGAACATGTCTT
JMFN011A09+           ATTATTGTGATCATATGATTAGGAAGATTATTTGCCATGAAATCAGAAAGAACATGTCTT
JMFN025O20+           ATTATTGTGATCATATGATTAGGAAGATTATTTGCCATGAAATCAGAAAGAACATGTCTT
JMFN018P08+           ATTATTGTGATCATATGATTAGGAAGATTATTTGCCATGAAATCAGAAAGAACATGTCTT
                      ____________________________________________________________
consensus             ATTATTGTGATCATATGATTAGGAAGATTATTTGCCATGAAATCAGAAAGAACATGTCTT
 
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rJMFF047E11-          TTCAAATTCCTTTTGCTCTTTGCGGCAAAACTCAAATTCATTTGTGTGGTAGTGCATGCA
JMFF047E11+           TTCAAATTCCTTTTGCTCTTTGCGGCAAAACTCAAATTCATTTGTGTGGTAGTGCATGCA
JMFN011A09+           TTCAAATTCCTTTTGCTCTTTGCGGCAAAACTCAAATTCATTTGTGTGGTAGTGCATGCA
JMFN025O20+           TTCAAATTCCTTTTGCTCTTTGCGGCAAAACTCAAATTCATTTGTGTGGTAGTGCATGCA
JMFN018P08+           TTCAAATTCCTTTTGCTCTTTGCGGCAAAACTCAAATTCATTTGTGTGGTAGTGCATGCA
                      ____________________________________________________________
consensus             TTCAAATTCCTTTTGCTCTTTGCGGCAAAACTCAAATTCATTTGTGTGGTAGTGCATGCA
 
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rJMFF047E11-          CCCTGCATAAGCATCCATTTCTTTG                                   
JMFF047E11+           CCCTGCATAAGCATCCATTTCTTTGGTGCACCTTTGATGAAGATCTTTGAGCAGGCCGAG
JMFN011A09+           CCCTGCATAAGCATCCATTTCTTTGGTGCACCTTTGATGAAGATCTTTGAGCAGGCCGAG
JMFN025O20+           CCCTGCATAAGCATCCATTTCTTTGGTGCACCTTTGATGAAGATCTTTGAGCAGGCCGAG
JMFN018P08+           CCCTGCATAAGCATCCATTTCTTTGGTGCACCTTTGATGAAGATCTTTGAGCAGGCCGAG
                      ____________________________________________________________
consensus             CCCTGCATAAGCATCCATTTCTTTGGTGCACCTTTGATGAAGATCTTTGAGCAGGCCGAG
 
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JMFF047E11+           AACACAACGTGTAACTTGGTGGCCTTTGTCGAGGCATTTCTCGGGGTTAGGATCGTCTTT
JMFN011A09+           AACACAACGTGTAACTTGGTGGCCTTTGTCGAGGCATTTCTCGGGGTTAGGATCGTCTTT
JMFN025O20+           AACACAACGTGTAACTTGGTGGCCTTTGTCGAGGCATTTCTCGGGGTTAGGATCGTCTTT
JMFN018P08+           AACACAACGTGTAACTTGGTGGCCTTTGTCGAGGCATTTCTCGGGGTTAGGATCGTCTTT
                      ____________________________________________________________
consensus             AACACAACGTGTAACTTGGTGGCCTTTGTCGAGGCATTTCTCGGGGTTAGGATCGTCTTT
 
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JMFF047E11+           CTTACACTTGAGGAACGCCACATTCTCGCCCCGGCACCGAGTTTCGATGTGTTTCGACGC
JMFN011A09+           CTTACACTTGAGGAACGCCACATTCTCGCTCCGGCACCGAGTTTCGATGTGTTTCGACGC
JMFN025O20+           CTTACACTTGAGGAACGCCACATTCTCGCTCCGGCACCGAGTTTCGATGTGTTTCGACGC
JMFN018P08+           CTTACACTTGAGGAACGCCACATTCTCGCTCCGGCACCGAGTTTCGATGTGTTTCGACGC
                      ____________________________________________________________
consensus             CTTACACTTGAGGAACGCCACATTCTCGCTCCGGCACCGAGTTTCGATGTGTTTCGACGC
 
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JMFF047E11+           CGCCATCAGCACCGACGATGTAGGGATCGGAATTCCTCCGGCATCCACCGTGCTCGCCAT
JMFN011A09+           CGCCATCAGCACCGACGATGTAGGGATCGGAATTCCTCCGGCATCCACCGTGCTCGCCAT
JMFN025O20+           CGCCATCAGCACCGACGATGTAGGGATCGGAATTCCTCCGGCATCCACCGTGCTCGCCAT
JMFN018P08+           CGCCATCAGCACCGACGATGTAGGGATCGGAATTCCTCCGGCATCCACCGTGCTCGCCAT
                      ____________________________________________________________
consensus             CGCCATCAGCACCGACGATGTAGGGATCGGAATTCCTCCGGCATCCACCGTGCTCGCCAT
 
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JMFF047E11+           TCTCCAATCGCCCTCTTCTCCTCTTTCTCTGCAATCGAAACC                  
JMFN011A09+           TCTCCAATCGCCCTCTTCTCCTCTTTCTCTGCAATCGAAACC                  
JMFN025O20+           TCTCCAATCGCCCTCTTCTCCTCTTTCTCTGCAATCGAAACCGCTTAGAACAATCACT  
JMFN018P08+           TCTCCAATCGCCCTCTTCTCCTCTTTCTCTGCAATCGAAACCGCTTAGAACAATCACTGC
                      ____________________________________________________________
consensus             TCTCCAATCGCCCTCTTCTCCTCTTTCTCTGCAATCGAAACCGCTTAGAACAATCACTGC