Contig 013033:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN018J19Sequence635013033 (4)ref|XP_004241814.1|6e-117PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial [Solanum lycope
JMSF017H02Sequence258022088749013033 (4)emb|CDO97488.1|4e-108unnamed protein product [Coffea canephora]
JMSF022G14Sequence660013033 (4)ref|XP_010260407.1|8e-103PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1794013033 (4)emb|CDO97488.1|2e-107unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF022G14-                                          ATCTCTGAAAATTCTTGGATATTGCCCA
                      ____________________________________________________________
consensus                                             ATCTCTGAAAATTCTTGGATATTGCCCA
 
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rJMSF022G14-          AAAGTAATGTGCTTGCTTAGTGTTGGTTACATTAATGGGGTCATTTGTTCTAACATTATA
rJMSF017H02-                             GTGTTGGTTACATTAATGGGGTCATTTGTTCTAACATTATA
                      ____________________________________________________________
consensus             AAAGTAATGTGCTTGCTTAGTGTTGGTTACATTAATGGGGTCATTTGTTCTAACATTATA
 
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rJMSF022G14-          CTATACTAATGTCGCTTTTGAACTCATGAACTTGAAACCTCTGCGTTTACTAGAAGAGAG
rJMSF017H02-          CTATACTAATGTCGCTTTTGAACTCATGAACTTGAAACCTCTGCGTTTACTAGAAGAGAG
                      ____________________________________________________________
consensus             CTATACTAATGTCGCTTTTGAACTCATGAACTTGAAACCTCTGCGTTTACTAGAAGAGAG
 
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rJMSF022G14-          AGTGCAGTGCCTTTCTCCGCTTCCTGCTGGCGCACAACCATTTACGTGGTGTTTCAAGGT
rJMSF017H02-          AGTGCAGTGCCTTTCTCCGCTTCCTGCTGGCGCACAACCATTTACGTGGTGTTTCAAGGT
JMSF022G14+                                     CTGGCGCACAACCATTTACGTGGTGTTTCAAGGT
                      ____________________________________________________________
consensus             AGTGCAGTGCCTTTCTCCGCTTCCTGCTGGCGCACAACCATTTACGTGGTGTTTCAAGGT
 
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rJMSF022G14-          CATCCCCGATTACTGTTGGTACGTGCCAATTGCCCTCCTCCGACTCCTGCATAACAATTG
rJMSF017H02-          CATCCCCGATTACTGTTGGTACGTGCCAATTGCCCTCCTCCGACTCCTGCATAACAATTG
JMSF022G14+           CATCCCCGATTACTGTTGGTACGTGCCAATTGCCCTCCTCCGACTCCTGCATAACAATTG
JMFN018J19+                                                        CCTGCATAACAATTG
                      ____________________________________________________________
consensus             CATCCCCGATTACTGTTGGTACGTGCCAATTGCCCTCCTCCGACTCCTGCATAACAATTG
 
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rJMSF022G14-          AATATGGAGGAGGCATGTGTAGATTAAGTCCATGTTCTCTAGATGCAGTCATCCGGATCT
rJMSF017H02-          AATATGGAGGAGGCATGTGTAGATTAAGTCCATGTTCTCTAGATGCAGTCATCCGGATCT
JMSF022G14+           AATATGGAGGAGGCATGTGTAGATTAAGTCCATGTTCTCTAGATGCAGTCATCCGGATCT
JMFN018J19+           AATATGNAGGAGGCATGTGTAGATTAAGTCCATGTTCTCTAGATGCAGTCATCCGGATCT
                      ____________________________________________________________
consensus             AATATGGAGGAGGCATGTGTAGATTAAGTCCATGTTCTCTAGATGCAGTCATCCGGATCT
 
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rJMSF022G14-          GATGTTTTTCCTTCCATCTGGGGAAGAAGCTAGTCCCTAACAGCTGGAATAGGTGATCTC
rJMSF017H02-          GATGTTTTTCCTTCCATCTGGGGAAGAAGCTAGTCCCTAACAGCTGGAATAGGTGATCTC
JMSF022G14+           GATGTTTTTCCTTCCATCTGGGGAAGAAGCTAGTCCCTAACAGCTGGAATAGGTGATCTC
JMFN018J19+           GATGTTTTTCCTTCCATCTGGGGAAGAAGCTAGTCCCTAACAGCTGGAATAGGTGATCTC
                      ____________________________________________________________
consensus             GATGTTTTTCCTTCCATCTGGGGAAGAAGCTAGTCCCTAACAGCTGGAATAGGTGATCTC
 
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rJMSF022G14-          TCATCTCATCATTTGTCACCAGCAAACACTTGCAACTAACAGCAGCATATAACCAATACC
rJMSF017H02-          TCATCTCATCATTTGTCACCAGCAAACACTTGCAACTAACAGCAGCATATAACCAATACC
JMSF022G14+           TCATCTCATCATTTGTCACCAGCAAACACTTGCAACTAACAGCAGCATATAACCAATACC
JMFN018J19+           TCATCTCATCATTTGTCACCAGCAAACACTTGCAACTAACAGCAGCATATAACCAATACC
                      ____________________________________________________________
consensus             TCATCTCATCATTTGTCACCAGCAAACACTTGCAACTAACAGCAGCATATAACCAATACC
 
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rJMSF022G14-          AATCATCGTTTGAACCGAATGGAGTAGCATAAAGTGCACCAGCCTTTTTCCAGCTTTCTA
rJMSF017H02-          AATCATCGTTTGAACCGAATGGAGTAGCATAAAGTGCACCAGCCTTTTTCCAGCTTTCTA
JMSF022G14+           AATCATCGTTTGAACCGAATGGAGTAGCATAAAGTGCACCAGCCTTTTTCCAGCTTTCTA
JMFN018J19+           AATCATCGTTTGAACCGAATGGAGTAGCATAAAGTGCACCAGCCTTTTTCCAGCTTTCTA
                      ____________________________________________________________
consensus             AATCATCGTTTGAACCGAATGGAGTAGCATAAAGTGCACCAGCCTTTTTCCAGCTTTCTA
 
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rJMSF022G14-          GCAGCTTCTTGTTCTTAGGATGGACAGCAGGTCCTCCAGTTATACGATTTTTATGCAATA
rJMSF017H02-          GCAGCTTCTTGTTCTTAGGATGGACAGCAGGTCCTCCAGTTATACGATTTTTATGCAATA
JMSF022G14+           GCAGCTTCTTGTTCTTAGGATGGACAGCAGGTCCTCCAGTTATACGATTTTTATGCAATA
JMFN018J19+           GCAGCTTCTTGTTCTTAGGATGGACAGCAGGTCCTCCAGTTATACGATTTTTATGCAATA
                      ____________________________________________________________
consensus             GCAGCTTCTTGTTCTTAGGATGGACAGCAGGTCCTCCAGTTATACGATTTTTATGCAATA
 
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rJMSF022G14-          CAACAAGTGGCAGTTGCTTTGATTTGCTCATTTGATGTAATTGATTCACAACAGATTTGA
rJMSF017H02-          CAACAAGTGGCAGTTGCTTTGATTTGCTCATTTGATGTAATTGATTCACAACAGATTTGA
JMSF022G14+           CAACAAGTGGCAGTTGCTTTGATTTGCTCATTTGATGTAATTGATTCACAACAGATTTGA
JMFN018J19+           CAACAAGTGGCAGTTGCTTTGATTTGCTCATTTGATGTAATTGATTCACAACAGATTTGA
                      ____________________________________________________________
consensus             CAACAAGTGGCAGTTGCTTTGATTTGCTCATTTGATGTAATTGATTCACAACAGATTTGA
 
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rJMSF022G14-          GCTGTAAAAAACTAAAGTCTCGGTTATTAAGGAGGCTAACATTTGCACCATCTACCACTG
rJMSF017H02-          GCTGTAAAAAACTAAAGTCTCGGTTATTAAGGAGGCTAACATTTGCACCATCTACCACTG
JMSF022G14+           GCTGTAAAAAACTAAAGTCTCGGTTATTAAGGAGGCTAACATTTGCACCATCTACCACTG
JMFN018J19+           GCTGTAAAAAACTAAAGTCTCGGTTATTAAGGAGGCTAACATTTGCACCATCTACCACTG
                      ____________________________________________________________
consensus             GCTGTAAAAAACTAAAGTCTCGGTTATTAAGGAGGCTAACATTTGCACCATCTACCACTG
 
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rJMSF022G14-          CATCAAATGGACCATTCCTCTTAAGCCACTC                             
rJMSF017H02-          CATCAAATGGACCATTCCTCTTAAGCCACTC                             
JMSF022G14+           CATCAAATGGACCATTCCTCTTAAGCCACTC                             
JMFN018J19+           CATCAAATGGACCATTCCTCTTAAGCCACTCCTGAAATTGTAAAAAGTTATTTTTGGCTT
                      ____________________________________________________________
consensus             CATCAAATGGACCATTCCTCTTAAGCCACTCCTGAAATTGTAAAAAGTTATTTTTGGCTT
 
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JMFN018J19+           CTCTTTCAGAAGCCAACTTTGCCAAAGAATTAGCAAAATTCTCCGTCTCCCTAGGATCAA
                      ____________________________________________________________
consensus             CTCTTTCAGAAGCCAACTTTGCCAAAGAATTAGCAAAATTCTCCGTCTCCCTAGGATCAA
 
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JMFN018J19+           TATCAATGCTTACAAGCTTCTCCCCACATGAATGACACACTCCTGTCTCACTCATCTCAG
                      ____________________________________________________________
consensus             TATCAATGCTTACAAGCTTCTCCCCACATGAATGACACACTCCTGTCTCACTCATCTCAG